Wall clock time and date at job start Tue Mar 31 2020 06:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47091 * 2 1 4 4 C 1.53001 * 109.47051 * 185.19276 * 3 2 1 5 5 H 1.08994 * 109.47089 * 54.91111 * 4 3 2 6 6 C 1.52995 * 109.47189 * 294.90549 * 4 3 2 7 7 C 1.50701 * 109.47132 * 174.99777 * 6 4 3 8 8 C 1.38234 * 120.00349 * 269.72672 * 7 6 4 9 9 C 1.38229 * 120.00175 * 179.76518 * 8 7 6 10 10 C 1.38240 * 119.99828 * 0.50874 * 9 8 7 11 11 C 1.38236 * 120.00170 * 359.75097 * 10 9 8 12 12 C 1.38234 * 119.99537 * 359.97438 * 11 10 9 13 13 N 1.46903 * 109.47084 * 174.90607 * 4 3 2 14 14 C 1.46897 * 110.99985 * 273.78485 * 13 4 3 15 15 C 1.53006 * 109.46875 * 178.56923 * 14 13 4 16 16 H 1.08998 * 109.47197 * 304.99838 * 15 14 13 17 17 C 1.53003 * 109.46967 * 65.00102 * 15 14 13 18 18 C 1.52995 * 109.46890 * 185.00081 * 15 14 13 19 19 C 1.50702 * 109.47362 * 175.00470 * 18 15 14 20 20 H 1.08004 * 119.99558 * 359.97438 * 19 18 15 21 21 C 1.37877 * 120.00634 * 180.02562 * 19 18 15 22 22 N 1.31520 * 119.99323 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00104 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47483 * 89.99798 * 23 21 19 25 25 H 1.48505 * 109.46680 * 209.99667 * 23 21 19 26 26 H 1.48500 * 109.47252 * 329.99372 * 23 21 19 27 27 H 1.08999 * 109.47250 * 59.99298 * 1 2 3 28 28 H 1.08999 * 109.46973 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46662 * 299.99576 * 1 2 3 30 30 H 1.08993 * 109.47418 * 120.00010 * 2 1 3 31 31 H 1.09003 * 109.46662 * 240.00423 * 2 1 3 32 32 H 1.08996 * 109.47192 * 305.19423 * 3 2 1 33 33 H 1.09003 * 109.46978 * 65.19354 * 3 2 1 34 34 H 1.09000 * 109.47518 * 295.00236 * 6 4 3 35 35 H 1.09004 * 109.46844 * 55.00245 * 6 4 3 36 36 H 1.08000 * 119.99378 * 0.02562 * 8 7 6 37 37 H 1.07995 * 120.00477 * 180.23557 * 9 8 7 38 38 H 1.07999 * 120.00111 * 179.72054 * 10 9 8 39 39 H 1.07994 * 120.00281 * 179.97438 * 11 10 9 40 40 H 1.08008 * 119.99779 * 179.97438 * 12 11 10 41 41 H 1.00905 * 110.99883 * 37.73728 * 13 4 3 42 42 H 1.08994 * 109.47151 * 298.56787 * 14 13 4 43 43 H 1.09000 * 109.47340 * 58.57365 * 14 13 4 44 44 H 1.08996 * 109.46943 * 179.97438 * 17 15 14 45 45 H 1.08996 * 109.47137 * 300.00083 * 17 15 14 46 46 H 1.08999 * 109.46647 * 59.99715 * 17 15 14 47 47 H 1.09006 * 109.47558 * 295.00122 * 18 15 14 48 48 H 1.09002 * 109.47397 * 55.00184 * 18 15 14 49 49 H 0.97002 * 119.99703 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4445 -0.1306 5 1 3.8539 0.8799 -1.0168 6 6 4.1834 0.7985 1.1105 7 6 5.6754 0.6889 0.9286 8 6 6.2206 -0.4455 0.3570 9 6 7.5887 -0.5440 0.1857 10 6 8.4126 0.4876 0.5957 11 6 7.8679 1.6197 1.1723 12 6 6.4993 1.7205 1.3383 13 7 4.0436 2.8277 -0.2532 14 6 4.0136 3.2731 -1.6527 15 6 4.4848 4.7265 -1.7355 16 1 3.8802 5.3429 -1.0702 17 6 5.9535 4.8112 -1.3151 18 6 4.3358 5.2297 -3.1727 19 6 4.6831 6.6950 -3.2304 20 1 4.9800 7.2154 -2.3318 21 6 4.6208 7.3716 -4.4302 22 7 4.2588 6.7379 -5.5243 23 14 5.0507 9.1880 -4.5015 24 1 6.5022 9.3429 -4.7738 25 1 4.2714 9.8388 -5.5853 26 1 4.7199 9.8264 -3.2021 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.6027 1.9825 -0.8398 33 1 1.7546 1.9288 0.9329 34 1 3.9681 1.4121 1.9853 35 1 3.7606 -0.1962 1.2515 36 1 5.5771 -1.2531 0.0403 37 1 8.0143 -1.4286 -0.2644 38 1 9.4819 0.4088 0.4660 39 1 8.5116 2.4254 1.4930 40 1 6.0737 2.6049 1.7892 41 1 3.5093 3.4490 0.3355 42 1 4.6734 2.6428 -2.2488 43 1 2.9960 3.1987 -2.0360 44 1 6.2892 5.8465 -1.3746 45 1 6.0596 4.4527 -0.2913 46 1 6.5579 4.1948 -1.9805 47 1 5.0074 4.6712 -3.8248 48 1 3.3068 5.0869 -3.5028 49 1 4.2146 7.2140 -6.3683 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602529133.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:20 Heat of formation + Delta-G solvation = -18.709015 kcal Electronic energy + Delta-G solvation = -23195.639708 eV Core-core repulsion = 20120.650131 eV Total energy + Delta-G solvation = -3074.989577 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.36628 -37.72518 -35.56471 -33.47777 -32.56269 -31.42094 -30.71027 -28.80580 -26.68715 -26.19797 -24.98036 -22.72126 -22.40587 -21.75196 -21.34817 -20.39435 -18.89582 -16.73451 -16.31266 -15.51052 -15.39006 -15.04286 -14.66859 -14.54669 -14.18852 -14.17127 -13.85345 -13.26762 -13.13443 -13.03085 -12.55760 -12.35153 -12.20053 -12.19031 -11.84572 -11.75323 -11.42155 -11.32486 -11.09746 -11.02283 -10.83781 -10.79182 -10.73804 -10.65847 -10.54401 -10.25470 -10.18895 -9.65258 -9.09792 -8.91913 -8.73892 -8.49279 -8.30201 -7.95934 -5.95063 -3.95947 1.53356 1.60021 3.34498 3.40658 3.43878 3.95171 4.40231 4.52233 4.68711 4.83047 4.96412 5.01213 5.07326 5.14107 5.20859 5.28554 5.40320 5.40913 5.55223 5.56769 5.64708 5.66721 5.73189 5.76695 5.81567 5.86889 5.91713 5.97455 6.06036 6.12597 6.18751 6.21550 6.24899 6.31204 6.49790 6.61437 6.62666 6.68643 6.74550 6.84301 7.08142 7.18852 7.23900 7.25802 7.45583 7.71337 7.76164 7.89798 8.05639 8.49823 9.10538 9.67260 11.16534 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012366 B = 0.003983 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.803163 B = 7027.762853 C = 8741.799733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.150 4.150 4 C 0.092 3.908 5 H 0.075 0.925 6 C -0.070 4.070 7 C -0.062 4.062 8 C -0.126 4.126 9 C -0.126 4.126 10 C -0.130 4.130 11 C -0.121 4.121 12 C -0.086 4.086 13 N -0.677 5.677 14 C 0.067 3.933 15 C -0.081 4.081 16 H 0.051 0.949 17 C -0.120 4.120 18 C 0.028 3.972 19 C -0.511 4.511 20 H 0.056 0.944 21 C 0.055 3.945 22 N -0.897 5.897 23 Si 0.889 3.111 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.335 0.665 42 H 0.063 0.937 43 H 0.022 0.978 44 H 0.051 0.949 45 H 0.042 0.958 46 H 0.038 0.962 47 H 0.015 0.985 48 H 0.011 0.989 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.380 -16.048 14.800 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.189 4.189 4 C -0.018 4.018 5 H 0.093 0.907 6 C -0.108 4.108 7 C -0.062 4.062 8 C -0.144 4.144 9 C -0.144 4.144 10 C -0.148 4.148 11 C -0.140 4.140 12 C -0.104 4.104 13 N -0.306 5.306 14 C -0.061 4.061 15 C -0.100 4.100 16 H 0.070 0.930 17 C -0.177 4.177 18 C -0.010 4.010 19 C -0.549 4.549 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.537 5.537 23 Si 0.717 3.283 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.153 0.847 42 H 0.082 0.918 43 H 0.040 0.960 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.033 0.967 48 H 0.029 0.971 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.268 -16.189 14.583 21.790 hybrid contribution -0.728 1.186 -0.535 1.491 sum -0.460 -15.003 14.048 20.558 Atomic orbital electron populations 1.21787 0.96118 1.01322 1.01824 1.21529 0.95657 0.96848 1.01923 1.22372 0.97043 0.97229 1.02259 1.21571 0.91120 0.91330 0.97787 0.90685 1.20687 0.91277 1.00532 0.98294 1.19699 0.95286 0.93686 0.97567 1.20974 0.94999 0.97913 1.00487 1.21017 0.93804 0.98847 1.00707 1.21058 0.99410 0.94429 0.99897 1.21140 0.95487 0.97632 0.99693 1.20979 0.92826 0.97728 0.98845 1.60635 1.58627 1.01738 1.09616 1.22128 0.98552 0.97867 0.87594 1.21182 0.96250 0.92210 1.00371 0.93016 1.21556 0.96109 1.00881 0.99143 1.19112 0.96712 0.95718 0.89448 1.21242 1.44864 0.94909 0.93929 0.92622 1.25018 0.95568 0.98069 0.95893 1.69974 1.48516 1.36149 0.99087 0.86643 0.78376 0.85652 0.77626 1.20728 1.21340 1.19925 0.92746 0.93001 0.92891 0.91886 0.92082 0.91663 0.91859 0.91185 0.91120 0.86845 0.86785 0.86783 0.86545 0.86033 0.84725 0.91837 0.95957 0.93040 0.93918 0.94332 0.96666 0.97051 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.12 -1.09 5.57 -26.73 -0.15 -1.24 16 3 C -0.15 -1.55 4.67 -26.73 -0.12 -1.67 16 4 C 0.09 1.07 2.05 -67.71 -0.14 0.93 16 5 H 0.07 0.98 7.80 -51.93 -0.41 0.57 16 6 C -0.07 -0.72 4.90 -27.88 -0.14 -0.86 16 7 C -0.06 -0.75 4.95 -104.62 -0.52 -1.26 16 8 C -0.13 -1.46 9.70 -39.59 -0.38 -1.84 16 9 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 10 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 11 C -0.12 -1.49 10.05 -39.58 -0.40 -1.88 16 12 C -0.09 -1.08 9.31 -39.58 -0.37 -1.44 16 13 N -0.68 -9.27 5.10 -106.73 -0.54 -9.81 16 14 C 0.07 1.16 4.87 -3.82 -0.02 1.14 16 15 C -0.08 -1.66 2.47 -90.62 -0.22 -1.88 16 16 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 17 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 18 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 19 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 20 H 0.06 1.54 7.06 -52.48 -0.37 1.17 16 21 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 22 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 23 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 26 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.51 6.72 -51.93 -0.35 0.16 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.78 7.42 -51.93 -0.39 0.40 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.07 0.63 6.40 -51.93 -0.33 0.30 16 36 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 41 H 0.34 4.39 8.44 -39.29 -0.33 4.06 16 42 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 43 H 0.02 0.39 7.42 -51.93 -0.39 0.01 16 44 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 45 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 46 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -29.99 388.97 -11.25 -41.24 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -9.22 Total: 1.77 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: -3.07 Total: -29.40 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.19 Total: -36.37 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.99 -11.25 -41.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602529133.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.532 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds