Wall clock time and date at job start Tue Mar 31 2020 06:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47091 * 2 1 4 4 C 1.53001 * 109.47051 * 185.19276 * 3 2 1 5 5 H 1.08994 * 109.47089 * 54.91111 * 4 3 2 6 6 C 1.52995 * 109.47189 * 294.90549 * 4 3 2 7 7 C 1.50701 * 109.47132 * 174.99777 * 6 4 3 8 8 C 1.38234 * 120.00349 * 269.72672 * 7 6 4 9 9 C 1.38229 * 120.00175 * 179.76518 * 8 7 6 10 10 C 1.38240 * 119.99828 * 0.50874 * 9 8 7 11 11 C 1.38236 * 120.00170 * 359.75097 * 10 9 8 12 12 C 1.38234 * 119.99537 * 359.97438 * 11 10 9 13 13 N 1.46903 * 109.47084 * 174.90607 * 4 3 2 14 14 C 1.46897 * 110.99985 * 273.78485 * 13 4 3 15 15 C 1.53006 * 109.46875 * 178.56923 * 14 13 4 16 16 H 1.08998 * 109.47197 * 304.99838 * 15 14 13 17 17 C 1.53003 * 109.46967 * 65.00102 * 15 14 13 18 18 C 1.52995 * 109.46890 * 185.00081 * 15 14 13 19 19 C 1.50702 * 109.47362 * 175.00470 * 18 15 14 20 20 H 1.08004 * 119.99558 * 359.97438 * 19 18 15 21 21 C 1.37877 * 120.00634 * 180.02562 * 19 18 15 22 22 N 1.31520 * 119.99323 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00104 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47483 * 89.99798 * 23 21 19 25 25 H 1.48505 * 109.46680 * 209.99667 * 23 21 19 26 26 H 1.48500 * 109.47252 * 329.99372 * 23 21 19 27 27 H 1.08999 * 109.47250 * 59.99298 * 1 2 3 28 28 H 1.08999 * 109.46973 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46662 * 299.99576 * 1 2 3 30 30 H 1.08993 * 109.47418 * 120.00010 * 2 1 3 31 31 H 1.09003 * 109.46662 * 240.00423 * 2 1 3 32 32 H 1.08996 * 109.47192 * 305.19423 * 3 2 1 33 33 H 1.09003 * 109.46978 * 65.19354 * 3 2 1 34 34 H 1.09000 * 109.47518 * 295.00236 * 6 4 3 35 35 H 1.09004 * 109.46844 * 55.00245 * 6 4 3 36 36 H 1.08000 * 119.99378 * 0.02562 * 8 7 6 37 37 H 1.07995 * 120.00477 * 180.23557 * 9 8 7 38 38 H 1.07999 * 120.00111 * 179.72054 * 10 9 8 39 39 H 1.07994 * 120.00281 * 179.97438 * 11 10 9 40 40 H 1.08008 * 119.99779 * 179.97438 * 12 11 10 41 41 H 1.00905 * 110.99883 * 37.73728 * 13 4 3 42 42 H 1.08994 * 109.47151 * 298.56787 * 14 13 4 43 43 H 1.09000 * 109.47340 * 58.57365 * 14 13 4 44 44 H 1.08996 * 109.46943 * 179.97438 * 17 15 14 45 45 H 1.08996 * 109.47137 * 300.00083 * 17 15 14 46 46 H 1.08999 * 109.46647 * 59.99715 * 17 15 14 47 47 H 1.09006 * 109.47558 * 295.00122 * 18 15 14 48 48 H 1.09002 * 109.47397 * 55.00184 * 18 15 14 49 49 H 0.97002 * 119.99703 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4445 -0.1306 5 1 3.8539 0.8799 -1.0168 6 6 4.1834 0.7985 1.1105 7 6 5.6754 0.6889 0.9286 8 6 6.2206 -0.4455 0.3570 9 6 7.5887 -0.5440 0.1857 10 6 8.4126 0.4876 0.5957 11 6 7.8679 1.6197 1.1723 12 6 6.4993 1.7205 1.3383 13 7 4.0436 2.8277 -0.2532 14 6 4.0136 3.2731 -1.6527 15 6 4.4848 4.7265 -1.7355 16 1 3.8802 5.3429 -1.0702 17 6 5.9535 4.8112 -1.3151 18 6 4.3358 5.2297 -3.1727 19 6 4.6831 6.6950 -3.2304 20 1 4.9800 7.2154 -2.3318 21 6 4.6208 7.3716 -4.4302 22 7 4.2588 6.7379 -5.5243 23 14 5.0507 9.1880 -4.5015 24 1 6.5022 9.3429 -4.7738 25 1 4.2714 9.8388 -5.5853 26 1 4.7199 9.8264 -3.2021 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.6027 1.9825 -0.8398 33 1 1.7546 1.9288 0.9329 34 1 3.9681 1.4121 1.9853 35 1 3.7606 -0.1962 1.2515 36 1 5.5771 -1.2531 0.0403 37 1 8.0143 -1.4286 -0.2644 38 1 9.4819 0.4088 0.4660 39 1 8.5116 2.4254 1.4930 40 1 6.0737 2.6049 1.7892 41 1 3.5093 3.4490 0.3355 42 1 4.6734 2.6428 -2.2488 43 1 2.9960 3.1987 -2.0360 44 1 6.2892 5.8465 -1.3746 45 1 6.0596 4.4527 -0.2913 46 1 6.5579 4.1948 -1.9805 47 1 5.0074 4.6712 -3.8248 48 1 3.3068 5.0869 -3.5028 49 1 4.2146 7.2140 -6.3683 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602529133.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:19 Heat of formation + Delta-G solvation = -32.585292 kcal Electronic energy + Delta-G solvation = -23196.241429 eV Core-core repulsion = 20120.650131 eV Total energy + Delta-G solvation = -3075.591297 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.27330 -38.82314 -37.05231 -34.85130 -33.97012 -32.78801 -31.58405 -29.94352 -28.59827 -27.01727 -26.55018 -24.44751 -23.28611 -22.80136 -22.17851 -21.44811 -20.47934 -18.49548 -17.59431 -16.66438 -16.42734 -16.29234 -16.03426 -15.62758 -15.51252 -15.33640 -14.98911 -14.39183 -14.28678 -14.09083 -13.93225 -13.72813 -13.41400 -13.21709 -13.04257 -13.02451 -12.79698 -12.75150 -12.62847 -12.31515 -12.20054 -11.96035 -11.92189 -11.86279 -11.64424 -11.58555 -11.44903 -11.36717 -11.07379 -10.84932 -10.53707 -9.63845 -9.41472 -9.10312 -8.17527 -6.26755 0.64396 0.70507 1.39647 1.40832 1.51693 2.41864 3.05427 3.15922 3.31404 3.83183 4.02569 4.12942 4.16713 4.18881 4.27488 4.32698 4.37454 4.40884 4.46794 4.53288 4.57171 4.74116 4.77546 4.82574 4.85336 4.90792 4.94222 4.96306 5.04046 5.05422 5.08256 5.17332 5.26409 5.30063 5.33245 5.36999 5.43364 5.47358 5.50180 5.51185 5.57583 5.73984 5.79810 5.82281 5.89243 5.93758 6.18079 6.31639 6.34017 6.62743 6.89426 7.41615 8.94699 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012366 B = 0.003983 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.803163 B = 7027.762853 C = 8741.799733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.143 4.143 4 C 0.097 3.903 5 H 0.060 0.940 6 C -0.062 4.062 7 C -0.073 4.073 8 C -0.136 4.136 9 C -0.135 4.135 10 C -0.142 4.142 11 C -0.137 4.137 12 C -0.101 4.101 13 N -0.671 5.671 14 C 0.085 3.915 15 C -0.071 4.071 16 H 0.055 0.945 17 C -0.107 4.107 18 C 0.033 3.967 19 C -0.528 4.528 20 H 0.061 0.939 21 C -0.003 4.003 22 N -0.937 5.937 23 Si 0.961 3.039 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.262 1.262 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.342 0.658 42 H 0.049 0.951 43 H 0.014 0.986 44 H 0.035 0.965 45 H 0.069 0.931 46 H 0.026 0.974 47 H -0.015 1.015 48 H -0.016 1.016 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.325 -16.314 16.576 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.182 4.182 4 C -0.013 4.013 5 H 0.078 0.922 6 C -0.099 4.099 7 C -0.073 4.073 8 C -0.154 4.154 9 C -0.153 4.153 10 C -0.160 4.160 11 C -0.155 4.155 12 C -0.119 4.119 13 N -0.301 5.301 14 C -0.044 4.044 15 C -0.090 4.090 16 H 0.073 0.927 17 C -0.164 4.164 18 C -0.004 4.004 19 C -0.566 4.566 20 H 0.079 0.921 21 C -0.200 4.200 22 N -0.577 5.577 23 Si 0.785 3.215 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.186 1.186 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.161 0.839 42 H 0.067 0.933 43 H 0.033 0.967 44 H 0.054 0.946 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.003 0.997 48 H 0.002 0.998 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.320 -16.464 16.384 23.229 hybrid contribution -0.738 1.207 -1.098 1.790 sum -0.417 -15.257 15.286 21.601 Atomic orbital electron populations 1.21784 0.95770 1.01957 1.01536 1.21513 0.95944 0.95729 1.02468 1.22284 0.95809 0.98248 1.01895 1.21563 0.92083 0.89606 0.98053 0.92191 1.20649 0.90233 1.01534 0.97502 1.19918 0.96101 0.93709 0.97558 1.21262 0.95470 0.98365 1.00287 1.21336 0.94001 0.99486 1.00485 1.21341 1.00459 0.94401 0.99766 1.21375 0.95776 0.98285 1.00032 1.21123 0.93202 0.98133 0.99473 1.60562 1.59296 1.03077 1.07183 1.21745 0.97495 0.95454 0.89742 1.20988 0.97204 0.94165 0.96668 0.92675 1.21425 0.94941 0.99699 1.00353 1.19003 0.94086 0.94957 0.92390 1.21640 1.44612 0.96039 0.94270 0.92060 1.25958 0.95360 1.03164 0.95482 1.70114 1.49622 1.38248 0.99763 0.85510 0.78276 0.79559 0.78109 1.19961 1.20907 1.18616 0.93865 0.91932 0.92377 0.90286 0.92553 0.93700 0.90784 0.90353 0.89201 0.85263 0.84986 0.85266 0.85682 0.85964 0.83933 0.93275 0.96741 0.94594 0.91252 0.95489 0.99691 0.99755 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.91 71.98 0.71 -1.64 16 2 C -0.12 -1.89 5.57 30.60 0.17 -1.72 16 3 C -0.14 -2.76 4.67 30.60 0.14 -2.61 16 4 C 0.10 2.11 2.05 44.91 0.09 2.20 16 5 H 0.06 1.52 7.80 -2.39 -0.02 1.50 16 6 C -0.06 -1.12 4.90 29.85 0.15 -0.98 16 7 C -0.07 -1.62 4.95 -19.87 -0.10 -1.72 16 8 C -0.14 -2.93 9.70 22.27 0.22 -2.71 16 9 C -0.14 -2.90 10.05 22.27 0.22 -2.67 16 10 C -0.14 -3.15 10.05 22.27 0.22 -2.93 16 11 C -0.14 -3.21 10.05 22.27 0.22 -2.99 16 12 C -0.10 -2.42 9.31 22.27 0.21 -2.21 16 13 N -0.67 -17.70 5.10 -491.58 -2.51 -20.21 16 14 C 0.09 2.96 4.87 86.31 0.42 3.38 16 15 C -0.07 -2.95 2.47 -10.79 -0.03 -2.97 16 16 H 0.05 2.24 8.14 -2.39 -0.02 2.23 16 17 C -0.11 -4.18 8.89 71.98 0.64 -3.54 16 18 C 0.03 1.79 4.45 29.85 0.13 1.92 16 19 C -0.53 -30.28 8.41 25.60 0.22 -30.07 16 20 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 21 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 22 N -0.94 -58.18 13.29 21.45 0.28 -57.90 16 23 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 26 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 27 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 1.03 6.72 -2.39 -0.02 1.01 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.04 1.05 7.42 -2.39 -0.02 1.04 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 35 H 0.09 1.32 6.40 -2.38 -0.02 1.30 16 36 H 0.13 2.28 8.06 -2.91 -0.02 2.25 16 37 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 40 H 0.12 2.80 8.06 -2.91 -0.02 2.78 16 41 H 0.34 8.40 8.44 -89.69 -0.76 7.64 16 42 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 43 H 0.01 0.52 7.42 -2.39 -0.02 0.50 16 44 H 0.03 1.49 6.95 -2.39 -0.02 1.47 16 45 H 0.07 2.33 7.75 -2.39 -0.02 2.31 16 46 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 47 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 48 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 49 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -65.18 388.97 4.03 -61.15 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.12 Total: 20.87 kcal Atomic # 6 Polarization: -55.05 SS G_CDS: 4.10 Total: -50.95 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -2.22 Total: -78.10 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.18 4.03 -61.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602529133.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.561 kcal (2) G-P(sol) polarization free energy of solvation -65.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds