Wall clock time and date at job start Tue Mar 31 2020 06:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47332 * 2 1 4 4 C 1.52995 * 109.46961 * 185.19843 * 3 2 1 5 5 H 1.09004 * 109.47351 * 54.92583 * 4 3 2 6 6 C 1.52993 * 109.47396 * 294.92033 * 4 3 2 7 7 C 1.50702 * 109.47378 * 175.00359 * 6 4 3 8 8 C 1.38239 * 119.99585 * 269.72810 * 7 6 4 9 9 C 1.38238 * 119.99474 * 179.76957 * 8 7 6 10 10 C 1.38229 * 120.00090 * 0.49863 * 9 8 7 11 11 C 1.38237 * 120.00264 * 359.75760 * 10 9 8 12 12 C 1.38230 * 120.00068 * 90.00103 * 7 6 4 13 13 N 1.46904 * 109.47044 * 174.92016 * 4 3 2 14 14 C 1.46900 * 111.00087 * 273.63314 * 13 4 3 15 15 C 1.53004 * 109.46779 * 185.56594 * 14 13 4 16 16 H 1.09000 * 109.47544 * 55.00245 * 15 14 13 17 17 C 1.53003 * 109.47317 * 294.99672 * 15 14 13 18 18 C 1.53010 * 109.46934 * 174.99894 * 15 14 13 19 19 C 1.50691 * 109.47098 * 184.99711 * 18 15 14 20 20 H 1.08000 * 120.00314 * 0.02562 * 19 18 15 21 21 C 1.37877 * 120.00140 * 180.02562 * 19 18 15 22 22 N 1.31517 * 120.00466 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00008 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.46870 * 89.99755 * 23 21 19 25 25 H 1.48493 * 109.47571 * 210.00045 * 23 21 19 26 26 H 1.48507 * 109.47181 * 330.00374 * 23 21 19 27 27 H 1.08994 * 109.47192 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47074 * 300.00425 * 1 2 3 29 29 H 1.09006 * 109.46983 * 59.99976 * 1 2 3 30 30 H 1.08996 * 109.47128 * 120.00149 * 2 1 3 31 31 H 1.09001 * 109.47295 * 239.99951 * 2 1 3 32 32 H 1.09002 * 109.46979 * 305.19748 * 3 2 1 33 33 H 1.08994 * 109.47205 * 65.19911 * 3 2 1 34 34 H 1.08999 * 109.47363 * 295.00300 * 6 4 3 35 35 H 1.09001 * 109.47056 * 55.00505 * 6 4 3 36 36 H 1.07995 * 120.00006 * 359.97438 * 8 7 6 37 37 H 1.07999 * 119.99754 * 180.23574 * 9 8 7 38 38 H 1.08005 * 120.00127 * 179.72425 * 10 9 8 39 39 H 1.07998 * 119.99871 * 179.97438 * 11 10 9 40 40 H 1.07993 * 120.00371 * 0.02562 * 12 7 6 41 41 H 1.00898 * 110.99773 * 37.58504 * 13 4 3 42 42 H 1.09004 * 109.47328 * 305.56415 * 14 13 4 43 43 H 1.09000 * 109.47156 * 65.56852 * 14 13 4 44 44 H 1.08992 * 109.47044 * 300.00609 * 17 15 14 45 45 H 1.08998 * 109.46648 * 60.00197 * 17 15 14 46 46 H 1.09000 * 109.47020 * 179.97438 * 17 15 14 47 47 H 1.08995 * 109.47078 * 305.00290 * 18 15 14 48 48 H 1.09000 * 109.46734 * 65.00158 * 18 15 14 49 49 H 0.96996 * 120.00093 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4444 -0.1307 5 1 3.8538 0.8800 -1.0172 6 6 4.1835 0.7980 1.1101 7 6 5.6755 0.6884 0.9281 8 6 6.2205 -0.4459 0.3560 9 6 7.5886 -0.5443 0.1847 10 6 8.4125 0.4870 0.5948 11 6 7.8680 1.6190 1.1718 12 6 6.4994 1.7197 1.3384 13 7 4.0437 2.8276 -0.2530 14 6 4.0170 3.2722 -1.6528 15 6 4.6502 4.6611 -1.7589 16 1 5.6517 4.6376 -1.3294 17 6 3.7918 5.6725 -0.9966 18 6 4.7359 5.0714 -3.2305 19 6 5.4694 6.3828 -3.3444 20 1 5.8380 6.8743 -2.4561 21 6 5.6700 6.9553 -4.5825 22 7 6.3106 8.0996 -4.6820 23 14 5.0318 6.1056 -6.1188 24 1 3.6503 6.5699 -6.4035 25 1 5.9117 6.4355 -7.2687 26 1 5.0260 4.6360 -5.9055 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.6027 1.9825 -0.8398 33 1 1.7548 1.9287 0.9328 34 1 3.9683 1.4114 1.9850 35 1 3.7607 -0.1968 1.2509 36 1 5.5771 -1.2536 0.0398 37 1 8.0141 -1.4289 -0.2658 38 1 9.4819 0.4082 0.4651 39 1 8.5118 2.4246 1.4926 40 1 6.0740 2.6038 1.7897 41 1 3.5078 3.4492 0.3340 42 1 4.5783 2.5690 -2.2682 43 1 2.9849 3.3160 -2.0006 44 1 2.7904 5.6960 -1.4262 45 1 3.7308 5.3802 0.0516 46 1 4.2432 6.6618 -1.0719 47 1 5.2720 4.3053 -3.7906 48 1 3.7302 5.1812 -3.6362 49 1 6.4520 8.5021 -5.5531 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602529137.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:23 Heat of formation + Delta-G solvation = -14.694022 kcal Electronic energy + Delta-G solvation = -23211.595317 eV Core-core repulsion = 20136.779843 eV Total energy + Delta-G solvation = -3074.815474 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.38666 -37.82202 -35.71778 -33.52486 -32.55091 -31.50670 -30.70519 -28.96804 -27.25623 -26.23805 -25.19417 -22.54892 -22.40835 -21.61048 -21.37022 -20.35843 -18.92201 -16.88664 -16.64802 -15.61645 -15.45700 -15.20557 -14.83316 -14.46338 -14.26840 -13.97369 -13.82882 -13.25330 -13.19402 -13.02989 -12.85410 -12.46940 -12.33138 -12.18899 -12.12824 -11.89571 -11.62102 -11.48457 -11.20556 -11.10639 -10.97594 -10.79852 -10.75588 -10.68850 -10.62336 -10.34808 -9.75692 -9.69439 -9.39019 -9.02424 -8.73982 -8.50297 -8.48427 -8.05580 -5.98977 -3.95433 1.53313 1.60108 3.33109 3.40694 3.44885 3.94930 4.34184 4.49638 4.63052 4.76119 4.92313 4.98265 5.03145 5.13063 5.17732 5.26321 5.34708 5.36593 5.49416 5.51021 5.59636 5.61826 5.69860 5.71491 5.75883 5.77085 5.85091 5.88725 5.97268 6.01733 6.07259 6.15765 6.19173 6.24443 6.27855 6.43233 6.52063 6.61455 6.69727 6.80662 6.85713 7.02113 7.10964 7.18890 7.32457 7.38280 7.53849 7.68792 7.86705 8.61083 9.07050 9.64314 11.14563 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011288 B = 0.004354 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.846737 B = 6429.723692 C = 7952.684858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.150 4.150 4 C 0.092 3.908 5 H 0.075 0.925 6 C -0.070 4.070 7 C -0.064 4.064 8 C -0.126 4.126 9 C -0.126 4.126 10 C -0.129 4.129 11 C -0.121 4.121 12 C -0.086 4.086 13 N -0.678 5.678 14 C 0.065 3.935 15 C -0.072 4.072 16 H 0.070 0.930 17 C -0.134 4.134 18 C -0.009 4.009 19 C -0.511 4.511 20 H 0.073 0.927 21 C 0.065 3.935 22 N -0.906 5.906 23 Si 0.877 3.123 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.266 1.266 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.337 0.663 42 H 0.063 0.937 43 H 0.021 0.979 44 H 0.038 0.962 45 H 0.034 0.966 46 H 0.066 0.934 47 H 0.013 0.987 48 H 0.008 0.992 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.993 -18.840 13.193 23.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.189 4.189 4 C -0.019 4.019 5 H 0.094 0.906 6 C -0.108 4.108 7 C -0.064 4.064 8 C -0.144 4.144 9 C -0.144 4.144 10 C -0.147 4.147 11 C -0.139 4.139 12 C -0.104 4.104 13 N -0.308 5.308 14 C -0.063 4.063 15 C -0.091 4.091 16 H 0.089 0.911 17 C -0.191 4.191 18 C -0.046 4.046 19 C -0.549 4.549 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.545 5.545 23 Si 0.705 3.295 24 H -0.205 1.205 25 H -0.215 1.215 26 H -0.191 1.191 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.156 0.844 42 H 0.082 0.918 43 H 0.040 0.960 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.032 0.968 48 H 0.026 0.974 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.256 -18.876 13.038 23.536 hybrid contribution -1.229 -0.127 -1.255 1.761 sum -6.484 -19.003 11.783 23.281 Atomic orbital electron populations 1.21786 0.96109 1.01366 1.01778 1.21531 0.95646 0.96809 1.02000 1.22373 0.97035 0.97264 1.02198 1.21600 0.91119 0.91212 0.97956 0.90648 1.20679 0.91353 1.00520 0.98208 1.19685 0.95224 0.93754 0.97745 1.20966 0.95006 0.97883 1.00574 1.21017 0.93793 0.98858 1.00706 1.21072 0.99476 0.94388 0.99761 1.21167 0.95513 0.97644 0.99553 1.20986 0.92864 0.97733 0.98847 1.60607 1.58854 1.01832 1.09529 1.22143 0.98274 0.98026 0.87894 1.20995 0.98917 0.91077 0.98149 0.91134 1.21727 0.99146 1.00856 0.97376 1.19599 0.96222 0.97124 0.91692 1.21137 1.35187 1.04168 0.94381 0.90854 1.25021 0.94887 0.94716 0.98937 1.69915 1.42382 1.17893 1.24346 0.86819 0.78847 0.80710 0.83138 1.20462 1.21490 1.19112 0.92958 0.92854 0.92833 0.91793 0.92087 0.91812 0.91815 0.91160 0.91083 0.86877 0.86778 0.86711 0.86422 0.86002 0.84384 0.91828 0.96041 0.94260 0.94683 0.91545 0.96829 0.97388 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.01 5.57 -26.73 -0.15 -1.16 16 3 C -0.15 -1.44 4.67 -26.73 -0.12 -1.57 16 4 C 0.09 1.02 2.05 -67.72 -0.14 0.88 16 5 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 6 C -0.07 -0.70 4.90 -27.89 -0.14 -0.84 16 7 C -0.06 -0.77 4.95 -104.62 -0.52 -1.28 16 8 C -0.13 -1.46 9.70 -39.58 -0.38 -1.85 16 9 C -0.13 -1.46 10.05 -39.58 -0.40 -1.85 16 10 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 11 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 12 C -0.09 -1.10 9.31 -39.58 -0.37 -1.47 16 13 N -0.68 -9.02 5.58 -106.72 -0.60 -9.61 16 14 C 0.07 1.06 4.97 -3.82 -0.02 1.04 16 15 C -0.07 -1.43 2.55 -90.61 -0.23 -1.66 16 16 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 17 C -0.13 -2.45 8.77 37.16 0.33 -2.12 16 18 C -0.01 -0.21 3.52 -27.88 -0.10 -0.30 16 19 C -0.51 -14.58 8.96 -34.44 -0.31 -14.89 16 20 H 0.07 2.25 7.30 -52.49 -0.38 1.86 16 21 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 22 N -0.91 -28.24 13.96 55.43 0.77 -27.47 16 23 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.49 6.72 -51.93 -0.35 0.14 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.70 7.54 -51.93 -0.39 0.31 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 35 H 0.07 0.61 6.40 -51.93 -0.33 0.28 16 36 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.11 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.11 1.16 8.06 -52.48 -0.42 0.74 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 41 H 0.34 4.25 6.92 -39.29 -0.27 3.98 16 42 H 0.06 1.10 7.91 -51.93 -0.41 0.69 16 43 H 0.02 0.34 7.58 -51.93 -0.39 -0.05 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.03 0.53 6.81 -51.93 -0.35 0.18 16 46 H 0.07 1.38 6.95 -51.93 -0.36 1.02 16 47 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 48 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 49 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 383.45 15.07 5.78 5.78 Total: -1.00 -30.50 383.45 -10.86 -41.36 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -9.07 Total: 2.45 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: -3.07 Total: -29.96 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.18 Total: -37.08 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.50 -10.86 -41.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602529137.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.666 kcal (2) G-P(sol) polarization free energy of solvation -30.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds