Wall clock time and date at job start Tue Mar 31 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47332 * 2 1 4 4 C 1.52995 * 109.46961 * 185.19843 * 3 2 1 5 5 H 1.09004 * 109.47351 * 54.92583 * 4 3 2 6 6 C 1.52993 * 109.47396 * 294.92033 * 4 3 2 7 7 C 1.50702 * 109.47378 * 175.00359 * 6 4 3 8 8 C 1.38239 * 119.99585 * 269.72810 * 7 6 4 9 9 C 1.38238 * 119.99474 * 179.76957 * 8 7 6 10 10 C 1.38229 * 120.00090 * 0.49863 * 9 8 7 11 11 C 1.38237 * 120.00264 * 359.75760 * 10 9 8 12 12 C 1.38230 * 120.00068 * 90.00103 * 7 6 4 13 13 N 1.46904 * 109.47044 * 174.92016 * 4 3 2 14 14 C 1.46900 * 111.00087 * 273.63314 * 13 4 3 15 15 C 1.53004 * 109.46779 * 185.56594 * 14 13 4 16 16 H 1.09000 * 109.47544 * 55.00245 * 15 14 13 17 17 C 1.53003 * 109.47317 * 294.99672 * 15 14 13 18 18 C 1.53010 * 109.46934 * 174.99894 * 15 14 13 19 19 C 1.50691 * 109.47098 * 184.99711 * 18 15 14 20 20 H 1.08000 * 120.00314 * 0.02562 * 19 18 15 21 21 C 1.37877 * 120.00140 * 180.02562 * 19 18 15 22 22 N 1.31517 * 120.00466 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00008 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.46870 * 89.99755 * 23 21 19 25 25 H 1.48493 * 109.47571 * 210.00045 * 23 21 19 26 26 H 1.48507 * 109.47181 * 330.00374 * 23 21 19 27 27 H 1.08994 * 109.47192 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47074 * 300.00425 * 1 2 3 29 29 H 1.09006 * 109.46983 * 59.99976 * 1 2 3 30 30 H 1.08996 * 109.47128 * 120.00149 * 2 1 3 31 31 H 1.09001 * 109.47295 * 239.99951 * 2 1 3 32 32 H 1.09002 * 109.46979 * 305.19748 * 3 2 1 33 33 H 1.08994 * 109.47205 * 65.19911 * 3 2 1 34 34 H 1.08999 * 109.47363 * 295.00300 * 6 4 3 35 35 H 1.09001 * 109.47056 * 55.00505 * 6 4 3 36 36 H 1.07995 * 120.00006 * 359.97438 * 8 7 6 37 37 H 1.07999 * 119.99754 * 180.23574 * 9 8 7 38 38 H 1.08005 * 120.00127 * 179.72425 * 10 9 8 39 39 H 1.07998 * 119.99871 * 179.97438 * 11 10 9 40 40 H 1.07993 * 120.00371 * 0.02562 * 12 7 6 41 41 H 1.00898 * 110.99773 * 37.58504 * 13 4 3 42 42 H 1.09004 * 109.47328 * 305.56415 * 14 13 4 43 43 H 1.09000 * 109.47156 * 65.56852 * 14 13 4 44 44 H 1.08992 * 109.47044 * 300.00609 * 17 15 14 45 45 H 1.08998 * 109.46648 * 60.00197 * 17 15 14 46 46 H 1.09000 * 109.47020 * 179.97438 * 17 15 14 47 47 H 1.08995 * 109.47078 * 305.00290 * 18 15 14 48 48 H 1.09000 * 109.46734 * 65.00158 * 18 15 14 49 49 H 0.96996 * 120.00093 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4444 -0.1307 5 1 3.8538 0.8800 -1.0172 6 6 4.1835 0.7980 1.1101 7 6 5.6755 0.6884 0.9281 8 6 6.2205 -0.4459 0.3560 9 6 7.5886 -0.5443 0.1847 10 6 8.4125 0.4870 0.5948 11 6 7.8680 1.6190 1.1718 12 6 6.4994 1.7197 1.3384 13 7 4.0437 2.8276 -0.2530 14 6 4.0170 3.2722 -1.6528 15 6 4.6502 4.6611 -1.7589 16 1 5.6517 4.6376 -1.3294 17 6 3.7918 5.6725 -0.9966 18 6 4.7359 5.0714 -3.2305 19 6 5.4694 6.3828 -3.3444 20 1 5.8380 6.8743 -2.4561 21 6 5.6700 6.9553 -4.5825 22 7 6.3106 8.0996 -4.6820 23 14 5.0318 6.1056 -6.1188 24 1 3.6503 6.5699 -6.4035 25 1 5.9117 6.4355 -7.2687 26 1 5.0260 4.6360 -5.9055 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.6027 1.9825 -0.8398 33 1 1.7548 1.9287 0.9328 34 1 3.9683 1.4114 1.9850 35 1 3.7607 -0.1968 1.2509 36 1 5.5771 -1.2536 0.0398 37 1 8.0141 -1.4289 -0.2658 38 1 9.4819 0.4082 0.4651 39 1 8.5118 2.4246 1.4926 40 1 6.0740 2.6038 1.7897 41 1 3.5078 3.4492 0.3340 42 1 4.5783 2.5690 -2.2682 43 1 2.9849 3.3160 -2.0006 44 1 2.7904 5.6960 -1.4262 45 1 3.7308 5.3802 0.0516 46 1 4.2432 6.6618 -1.0719 47 1 5.2720 4.3053 -3.7906 48 1 3.7302 5.1812 -3.6362 49 1 6.4520 8.5021 -5.5531 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602529137.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:22 Heat of formation + Delta-G solvation = -29.917170 kcal Electronic energy + Delta-G solvation = -23212.255442 eV Core-core repulsion = 20136.779843 eV Total energy + Delta-G solvation = -3075.475599 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.28687 -38.88190 -37.08996 -34.82536 -34.00528 -32.87050 -31.60048 -30.15479 -28.94130 -27.00854 -26.64624 -24.08014 -23.30547 -22.74643 -22.18237 -21.26378 -20.54373 -18.94507 -17.64134 -16.74268 -16.49280 -16.24631 -15.99124 -15.67758 -15.51034 -15.15980 -15.07719 -14.75438 -14.14413 -14.06516 -14.00954 -13.81402 -13.62996 -13.40625 -13.13805 -13.04253 -12.86349 -12.69445 -12.57239 -12.31458 -12.08866 -11.97745 -11.85736 -11.73238 -11.66083 -11.55904 -11.46460 -11.34283 -11.11890 -11.00318 -10.74074 -9.66153 -9.42826 -9.09949 -8.26563 -6.28520 0.62436 0.68446 1.33656 1.36030 1.47708 2.36731 3.03583 3.08600 3.30267 3.83421 4.03897 4.11980 4.17867 4.20879 4.25513 4.28375 4.33665 4.39389 4.43828 4.48210 4.55549 4.73499 4.75457 4.77141 4.82262 4.86122 4.91978 4.94925 5.01408 5.02183 5.04979 5.09965 5.17551 5.27359 5.31726 5.33139 5.35242 5.39408 5.44058 5.50421 5.56999 5.71955 5.72922 5.74420 5.78202 5.92030 6.23019 6.31052 6.36171 6.63895 6.78936 7.34931 8.90324 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011288 B = 0.004354 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.846737 B = 6429.723692 C = 7952.684858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.142 4.142 4 C 0.097 3.903 5 H 0.064 0.936 6 C -0.063 4.063 7 C -0.072 4.072 8 C -0.134 4.134 9 C -0.134 4.134 10 C -0.142 4.142 11 C -0.140 4.140 12 C -0.104 4.104 13 N -0.681 5.681 14 C 0.082 3.918 15 C -0.067 4.067 16 H 0.047 0.953 17 C -0.125 4.125 18 C -0.006 4.006 19 C -0.517 4.517 20 H 0.034 0.966 21 C 0.002 3.998 22 N -0.953 5.953 23 Si 0.946 3.054 24 H -0.266 1.266 25 H -0.285 1.285 26 H -0.250 1.250 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.343 0.657 42 H 0.053 0.947 43 H 0.030 0.970 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.031 0.969 47 H 0.010 0.990 48 H 0.015 0.985 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 -21.491 13.261 26.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.181 4.181 4 C -0.013 4.013 5 H 0.082 0.918 6 C -0.101 4.101 7 C -0.072 4.072 8 C -0.152 4.152 9 C -0.151 4.151 10 C -0.160 4.160 11 C -0.158 4.158 12 C -0.122 4.122 13 N -0.312 5.312 14 C -0.047 4.047 15 C -0.086 4.086 16 H 0.066 0.934 17 C -0.183 4.183 18 C -0.044 4.044 19 C -0.555 4.555 20 H 0.052 0.948 21 C -0.194 4.194 22 N -0.595 5.595 23 Si 0.770 3.230 24 H -0.191 1.191 25 H -0.211 1.211 26 H -0.174 1.174 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.163 0.837 42 H 0.072 0.928 43 H 0.048 0.952 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.050 0.950 47 H 0.029 0.971 48 H 0.034 0.966 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.094 -21.543 13.130 26.207 hybrid contribution -0.593 0.729 -1.188 1.515 sum -7.687 -20.814 11.943 25.198 Atomic orbital electron populations 1.21781 0.95748 1.01903 1.01597 1.21515 0.95932 0.95804 1.02465 1.22280 0.95532 0.98234 1.02077 1.21585 0.92254 0.89446 0.98057 0.91762 1.20670 0.90050 1.01634 0.97705 1.19930 0.96213 0.93592 0.97456 1.21281 0.95408 0.98327 1.00178 1.21347 0.94051 0.99383 1.00368 1.21337 1.00499 0.94411 0.99786 1.21381 0.95898 0.98321 1.00236 1.21116 0.93194 0.98228 0.99634 1.60519 1.59741 1.03223 1.07708 1.21795 0.97993 0.95236 0.89703 1.20843 0.98561 0.93838 0.95350 0.93410 1.21623 0.98770 0.98524 0.99356 1.19551 0.95544 0.94500 0.94758 1.21444 1.35100 1.05814 0.93160 0.94765 1.25977 0.95226 0.95403 1.02764 1.70071 1.44212 1.19809 1.25398 0.85716 0.78605 0.80247 0.78427 1.19124 1.21098 1.17419 0.92107 0.92509 0.93564 0.90587 0.92352 0.93036 0.90986 0.90586 0.89032 0.84872 0.84786 0.85359 0.86097 0.86249 0.83698 0.92802 0.95177 0.93332 0.91473 0.95001 0.97143 0.96636 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 71.98 0.71 -1.28 16 2 C -0.12 -1.63 5.57 30.59 0.17 -1.45 16 3 C -0.14 -2.35 4.67 30.59 0.14 -2.20 16 4 C 0.10 1.91 2.05 44.91 0.09 2.00 16 5 H 0.06 1.45 7.69 -2.38 -0.02 1.43 16 6 C -0.06 -1.10 4.90 29.85 0.15 -0.96 16 7 C -0.07 -1.60 4.95 -19.87 -0.10 -1.70 16 8 C -0.13 -2.84 9.70 22.27 0.22 -2.63 16 9 C -0.13 -2.89 10.05 22.27 0.22 -2.66 16 10 C -0.14 -3.33 10.05 22.27 0.22 -3.10 16 11 C -0.14 -3.55 10.05 22.27 0.22 -3.33 16 12 C -0.10 -2.60 9.31 22.27 0.21 -2.40 16 13 N -0.68 -16.92 5.58 -491.57 -2.74 -19.67 16 14 C 0.08 2.55 4.97 86.30 0.43 2.98 16 15 C -0.07 -2.63 2.55 -10.79 -0.03 -2.66 16 16 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 17 C -0.13 -4.54 8.77 71.98 0.63 -3.91 16 18 C -0.01 -0.27 3.52 29.85 0.10 -0.17 16 19 C -0.52 -30.35 8.96 25.60 0.23 -30.12 16 20 H 0.03 2.21 7.30 -2.91 -0.02 2.19 16 21 C 0.00 0.14 5.47 84.65 0.46 0.60 16 22 N -0.95 -61.07 13.96 21.45 0.30 -60.77 16 23 Si 0.95 45.46 27.47 68.60 1.88 47.34 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 26 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.08 0.87 6.72 -2.39 -0.02 0.85 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 1.00 7.54 -2.39 -0.02 0.98 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 35 H 0.09 1.25 6.40 -2.39 -0.02 1.24 16 36 H 0.13 2.21 8.06 -2.91 -0.02 2.18 16 37 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 38 H 0.13 2.51 8.06 -2.91 -0.02 2.48 16 39 H 0.12 2.81 8.06 -2.91 -0.02 2.79 16 40 H 0.12 2.94 8.06 -2.91 -0.02 2.92 16 41 H 0.34 7.86 6.92 -89.70 -0.62 7.24 16 42 H 0.05 1.79 7.91 -2.38 -0.02 1.77 16 43 H 0.03 0.89 7.58 -2.39 -0.02 0.87 16 44 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.07 1.97 6.81 -2.39 -0.02 1.95 16 46 H 0.03 1.35 6.95 -2.39 -0.02 1.33 16 47 H 0.01 0.50 7.20 -2.39 -0.02 0.48 16 48 H 0.02 0.72 7.57 -2.39 -0.02 0.70 16 49 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -67.20 383.45 3.74 -63.46 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.21 Total: 22.61 kcal Atomic # 6 Polarization: -57.06 SS G_CDS: 4.09 Total: -52.97 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -2.44 Total: -80.44 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -67.20 3.74 -63.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602529137.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.543 kcal (2) G-P(sol) polarization free energy of solvation -67.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds