Wall clock time and date at job start Tue Mar 31 2020 06:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47761 * 2 1 4 4 C 1.52998 * 109.47510 * 176.14219 * 3 2 1 5 5 H 1.09004 * 109.46885 * 56.62600 * 4 3 2 6 6 C 1.53002 * 109.46778 * 176.62504 * 4 3 2 7 7 C 1.50706 * 109.46726 * 185.00097 * 6 4 3 8 8 C 1.38237 * 119.99988 * 269.72588 * 7 6 4 9 9 C 1.38226 * 120.00034 * 179.76924 * 8 7 6 10 10 C 1.38240 * 120.00012 * 0.50143 * 9 8 7 11 11 C 1.38237 * 119.99883 * 359.75133 * 10 9 8 12 12 C 1.38232 * 119.99803 * 0.02562 * 11 10 9 13 13 N 1.46896 * 109.47168 * 296.62412 * 4 3 2 14 14 C 1.46905 * 111.00002 * 303.64334 * 13 4 3 15 15 C 1.53001 * 109.46822 * 178.27449 * 14 13 4 16 16 H 1.08996 * 109.46955 * 304.99180 * 15 14 13 17 17 C 1.52993 * 109.47345 * 64.99795 * 15 14 13 18 18 C 1.53006 * 109.46893 * 184.99961 * 15 14 13 19 19 C 1.50696 * 109.46959 * 174.99577 * 18 15 14 20 20 H 1.07995 * 120.00365 * 0.02562 * 19 18 15 21 21 C 1.37884 * 119.99389 * 179.97438 * 19 18 15 22 22 N 1.31514 * 119.99274 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 120.00482 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47479 * 89.99569 * 23 21 19 25 25 H 1.48497 * 109.46993 * 210.00100 * 23 21 19 26 26 H 1.48503 * 109.46794 * 329.99473 * 23 21 19 27 27 H 1.08993 * 109.47339 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47063 * 299.99961 * 1 2 3 29 29 H 1.09002 * 109.46761 * 59.99761 * 1 2 3 30 30 H 1.09001 * 109.47133 * 239.99490 * 2 1 3 31 31 H 1.09006 * 109.47167 * 119.99976 * 2 1 3 32 32 H 1.08997 * 109.47070 * 56.13851 * 3 2 1 33 33 H 1.09005 * 109.46699 * 296.14828 * 3 2 1 34 34 H 1.09000 * 109.47520 * 304.99652 * 6 4 3 35 35 H 1.09000 * 109.47353 * 65.00238 * 6 4 3 36 36 H 1.08000 * 119.99733 * 0.02562 * 8 7 6 37 37 H 1.08000 * 120.00059 * 180.23115 * 9 8 7 38 38 H 1.08000 * 120.00138 * 179.72350 * 10 9 8 39 39 H 1.07999 * 120.00066 * 179.97438 * 11 10 9 40 40 H 1.08000 * 119.99944 * 179.97438 * 12 11 10 41 41 H 1.00897 * 110.99783 * 67.59711 * 13 4 3 42 42 H 1.08996 * 109.46695 * 298.27304 * 14 13 4 43 43 H 1.09000 * 109.47156 * 58.27282 * 14 13 4 44 44 H 1.09007 * 109.47154 * 60.00040 * 17 15 14 45 45 H 1.09003 * 109.47163 * 179.97438 * 17 15 14 46 46 H 1.08994 * 109.47489 * 299.99893 * 17 15 14 47 47 H 1.09000 * 109.46824 * 295.00399 * 18 15 14 48 48 H 1.09006 * 109.47023 * 54.99559 * 18 15 14 49 49 H 0.97007 * 119.99623 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5670 1.4435 0.0970 5 1 3.9836 0.8592 -0.7235 6 6 4.0824 2.8816 0.0124 7 6 5.5892 2.8743 -0.0157 8 6 6.3028 2.9390 1.1664 9 6 7.6848 2.9275 1.1410 10 6 8.3533 2.8618 -0.0672 11 6 7.6397 2.8024 -1.2497 12 6 6.2576 2.8092 -1.2239 13 7 3.9767 0.8511 1.3773 14 6 3.3625 1.5618 2.5068 15 6 3.7774 0.8910 3.8178 16 1 3.5225 -0.1681 3.7805 17 6 5.2867 1.0458 4.0146 18 6 3.0404 1.5520 4.9844 19 6 3.3539 0.8132 6.2599 20 1 4.0132 -0.0420 6.2405 21 6 2.7998 1.2297 7.4518 22 7 3.0739 0.5852 8.5649 23 14 1.6600 2.7092 7.4854 24 1 0.2599 2.2603 7.2777 25 1 1.7717 3.3902 8.8003 26 1 2.0426 3.6534 6.4050 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6214 1.9759 0.8533 33 1 1.7342 1.9359 -0.9226 34 1 3.7044 3.3502 -0.8963 35 1 3.7379 3.4428 0.8810 36 1 5.7805 2.9943 2.1101 37 1 8.2423 2.9743 2.0647 38 1 9.4331 2.8573 -0.0874 39 1 8.1620 2.7515 -2.1936 40 1 5.7001 2.7632 -2.1477 41 1 3.7571 -0.1333 1.4070 42 1 3.6964 2.5993 2.5079 43 1 2.2773 1.5294 2.4096 44 1 5.5414 2.1051 4.0520 45 1 5.5821 0.5683 4.9489 46 1 5.8117 0.5750 3.1836 47 1 3.3624 2.5892 5.0766 48 1 1.9664 1.5200 4.8006 49 1 2.6844 0.8785 9.4036 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602529147.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:27 Heat of formation + Delta-G solvation = -9.655319 kcal Electronic energy + Delta-G solvation = -23669.761682 eV Core-core repulsion = 20595.164703 eV Total energy + Delta-G solvation = -3074.596979 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.54606 -38.02142 -35.39103 -33.50431 -32.46861 -31.40098 -30.72622 -28.93777 -27.21569 -26.29801 -25.36979 -22.65121 -22.41404 -22.21587 -20.85454 -19.62381 -19.13089 -16.85371 -16.60894 -15.91112 -15.53192 -15.13580 -14.70916 -14.54346 -14.13517 -13.97268 -13.84936 -13.29638 -13.28389 -12.91495 -12.78497 -12.60178 -12.37485 -12.20515 -11.84990 -11.76765 -11.56703 -11.51632 -11.29023 -10.95680 -10.85663 -10.81380 -10.69921 -10.63089 -10.45591 -10.25147 -9.87783 -9.60948 -9.38120 -9.03156 -8.75659 -8.51620 -8.50093 -8.03850 -6.00573 -3.97126 1.50750 1.58009 3.31479 3.39319 3.42734 3.92784 4.39861 4.47844 4.67294 4.88013 4.91723 4.96566 5.06814 5.13684 5.19512 5.30787 5.33198 5.40331 5.49086 5.54438 5.57452 5.66137 5.68077 5.76092 5.81593 5.84480 5.85647 5.94742 6.03280 6.07823 6.16710 6.19584 6.22440 6.30148 6.37548 6.49409 6.58704 6.62127 6.69041 6.83911 6.88596 7.07801 7.16096 7.18706 7.31455 7.36632 7.50547 7.68082 7.85110 8.59450 9.05733 9.62620 11.12977 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012316 B = 0.004706 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.003425 B = 5948.825136 C = 7567.471975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.159 4.159 4 C 0.095 3.905 5 H 0.077 0.923 6 C -0.077 4.077 7 C -0.062 4.062 8 C -0.088 4.088 9 C -0.120 4.120 10 C -0.130 4.130 11 C -0.127 4.127 12 C -0.126 4.126 13 N -0.673 5.673 14 C 0.054 3.946 15 C -0.073 4.073 16 H 0.057 0.943 17 C -0.124 4.124 18 C -0.008 4.008 19 C -0.511 4.511 20 H 0.073 0.927 21 C 0.065 3.935 22 N -0.905 5.905 23 Si 0.877 3.123 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.266 1.266 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.339 0.661 42 H 0.066 0.934 43 H 0.029 0.971 44 H 0.037 0.963 45 H 0.057 0.943 46 H 0.046 0.954 47 H 0.014 0.986 48 H 0.006 0.994 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.721 3.783 -21.910 22.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.198 4.198 4 C -0.016 4.016 5 H 0.095 0.905 6 C -0.114 4.114 7 C -0.062 4.062 8 C -0.106 4.106 9 C -0.138 4.138 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.144 4.144 13 N -0.304 5.304 14 C -0.074 4.074 15 C -0.092 4.092 16 H 0.076 0.924 17 C -0.181 4.181 18 C -0.046 4.046 19 C -0.549 4.549 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.545 5.545 23 Si 0.705 3.295 24 H -0.205 1.205 25 H -0.215 1.215 26 H -0.191 1.191 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.144 0.856 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.158 0.842 42 H 0.084 0.916 43 H 0.047 0.953 44 H 0.056 0.944 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.032 0.968 48 H 0.025 0.975 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.284 4.139 -21.683 22.317 hybrid contribution -1.597 0.402 0.170 1.656 sum 1.687 4.541 -21.513 22.051 Atomic orbital electron populations 1.21745 0.95892 1.01520 1.01666 1.21507 0.95997 0.96787 1.01906 1.22388 0.97618 0.97290 1.02480 1.21525 0.91859 0.95014 0.93186 0.90479 1.20712 0.91651 0.96671 1.02413 1.19665 0.95115 0.98439 0.92955 1.21169 0.93720 0.97491 0.98245 1.21169 0.94781 1.00139 0.97720 1.21063 0.99440 1.01518 0.92818 1.21000 0.94210 1.01534 0.97811 1.20954 0.94302 1.01865 0.97242 1.60659 1.61946 1.06817 1.00981 1.22277 0.95986 0.98471 0.90679 1.20997 0.96423 0.99164 0.92625 0.92425 1.21623 0.95383 1.00235 1.00840 1.19603 0.94642 0.96253 0.94113 1.21137 1.28916 1.14617 0.90242 0.90868 1.25026 0.96320 0.96534 0.95682 1.69919 1.45080 1.40770 0.98722 0.86824 0.81508 0.83866 0.77334 1.20485 1.21499 1.19090 0.92862 0.92630 0.93072 0.92249 0.91821 0.91094 0.91985 0.91278 0.90707 0.85559 0.86392 0.86795 0.86841 0.86875 0.84247 0.91567 0.95299 0.94379 0.92429 0.93506 0.96755 0.97535 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.11 16 2 C -0.12 -1.25 5.76 -26.73 -0.15 -1.40 16 3 C -0.16 -1.62 4.34 -26.73 -0.12 -1.74 16 4 C 0.09 1.03 2.54 -67.71 -0.17 0.86 16 5 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 6 C -0.08 -0.84 4.69 -27.88 -0.13 -0.97 16 7 C -0.06 -0.75 4.95 -104.62 -0.52 -1.26 16 8 C -0.09 -1.17 9.32 -39.59 -0.37 -1.54 16 9 C -0.12 -1.50 10.05 -39.59 -0.40 -1.90 16 10 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 11 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 12 C -0.13 -1.39 9.70 -39.59 -0.38 -1.78 16 13 N -0.67 -8.65 5.17 -106.72 -0.55 -9.21 16 14 C 0.05 0.83 4.21 -3.82 -0.02 0.81 16 15 C -0.07 -1.39 2.46 -90.62 -0.22 -1.61 16 16 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 17 C -0.12 -2.30 8.57 37.15 0.32 -1.98 16 18 C -0.01 -0.19 3.52 -27.88 -0.10 -0.29 16 19 C -0.51 -14.36 8.96 -34.44 -0.31 -14.67 16 20 H 0.07 2.22 7.30 -52.49 -0.38 1.83 16 21 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 22 N -0.91 -28.00 13.96 55.43 0.77 -27.23 16 23 Si 0.88 21.83 27.47 -169.99 -4.67 17.17 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.71 6.74 -51.93 -0.35 0.36 16 32 H 0.07 0.83 6.12 -51.93 -0.32 0.51 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 35 H 0.07 0.89 6.23 -51.93 -0.32 0.57 16 36 H 0.13 1.81 5.88 -52.49 -0.31 1.50 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.11 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.11 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.11 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.34 4.32 7.30 -39.29 -0.29 4.03 16 42 H 0.07 1.03 5.50 -51.93 -0.29 0.74 16 43 H 0.03 0.45 6.07 -51.93 -0.32 0.13 16 44 H 0.04 0.68 7.30 -51.93 -0.38 0.30 16 45 H 0.06 1.21 6.95 -51.93 -0.36 0.85 16 46 H 0.05 0.79 7.75 -51.93 -0.40 0.39 16 47 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 48 H 0.01 0.15 7.57 -51.93 -0.39 -0.24 16 49 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -29.82 375.41 -10.60 -40.42 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -8.72 Total: 3.64 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: -3.09 Total: -30.44 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.22 Total: -36.43 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.82 -10.60 -40.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602529147.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.761 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds