Wall clock time and date at job start Tue Mar 31 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47761 * 2 1 4 4 C 1.52998 * 109.47510 * 176.14219 * 3 2 1 5 5 H 1.09004 * 109.46885 * 56.62600 * 4 3 2 6 6 C 1.53002 * 109.46778 * 176.62504 * 4 3 2 7 7 C 1.50706 * 109.46726 * 185.00097 * 6 4 3 8 8 C 1.38237 * 119.99988 * 269.72588 * 7 6 4 9 9 C 1.38226 * 120.00034 * 179.76924 * 8 7 6 10 10 C 1.38240 * 120.00012 * 0.50143 * 9 8 7 11 11 C 1.38237 * 119.99883 * 359.75133 * 10 9 8 12 12 C 1.38232 * 119.99803 * 0.02562 * 11 10 9 13 13 N 1.46896 * 109.47168 * 296.62412 * 4 3 2 14 14 C 1.46905 * 111.00002 * 303.64334 * 13 4 3 15 15 C 1.53001 * 109.46822 * 178.27449 * 14 13 4 16 16 H 1.08996 * 109.46955 * 304.99180 * 15 14 13 17 17 C 1.52993 * 109.47345 * 64.99795 * 15 14 13 18 18 C 1.53006 * 109.46893 * 184.99961 * 15 14 13 19 19 C 1.50696 * 109.46959 * 174.99577 * 18 15 14 20 20 H 1.07995 * 120.00365 * 0.02562 * 19 18 15 21 21 C 1.37884 * 119.99389 * 179.97438 * 19 18 15 22 22 N 1.31514 * 119.99274 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 120.00482 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47479 * 89.99569 * 23 21 19 25 25 H 1.48497 * 109.46993 * 210.00100 * 23 21 19 26 26 H 1.48503 * 109.46794 * 329.99473 * 23 21 19 27 27 H 1.08993 * 109.47339 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47063 * 299.99961 * 1 2 3 29 29 H 1.09002 * 109.46761 * 59.99761 * 1 2 3 30 30 H 1.09001 * 109.47133 * 239.99490 * 2 1 3 31 31 H 1.09006 * 109.47167 * 119.99976 * 2 1 3 32 32 H 1.08997 * 109.47070 * 56.13851 * 3 2 1 33 33 H 1.09005 * 109.46699 * 296.14828 * 3 2 1 34 34 H 1.09000 * 109.47520 * 304.99652 * 6 4 3 35 35 H 1.09000 * 109.47353 * 65.00238 * 6 4 3 36 36 H 1.08000 * 119.99733 * 0.02562 * 8 7 6 37 37 H 1.08000 * 120.00059 * 180.23115 * 9 8 7 38 38 H 1.08000 * 120.00138 * 179.72350 * 10 9 8 39 39 H 1.07999 * 120.00066 * 179.97438 * 11 10 9 40 40 H 1.08000 * 119.99944 * 179.97438 * 12 11 10 41 41 H 1.00897 * 110.99783 * 67.59711 * 13 4 3 42 42 H 1.08996 * 109.46695 * 298.27304 * 14 13 4 43 43 H 1.09000 * 109.47156 * 58.27282 * 14 13 4 44 44 H 1.09007 * 109.47154 * 60.00040 * 17 15 14 45 45 H 1.09003 * 109.47163 * 179.97438 * 17 15 14 46 46 H 1.08994 * 109.47489 * 299.99893 * 17 15 14 47 47 H 1.09000 * 109.46824 * 295.00399 * 18 15 14 48 48 H 1.09006 * 109.47023 * 54.99559 * 18 15 14 49 49 H 0.97007 * 119.99623 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5670 1.4435 0.0970 5 1 3.9836 0.8592 -0.7235 6 6 4.0824 2.8816 0.0124 7 6 5.5892 2.8743 -0.0157 8 6 6.3028 2.9390 1.1664 9 6 7.6848 2.9275 1.1410 10 6 8.3533 2.8618 -0.0672 11 6 7.6397 2.8024 -1.2497 12 6 6.2576 2.8092 -1.2239 13 7 3.9767 0.8511 1.3773 14 6 3.3625 1.5618 2.5068 15 6 3.7774 0.8910 3.8178 16 1 3.5225 -0.1681 3.7805 17 6 5.2867 1.0458 4.0146 18 6 3.0404 1.5520 4.9844 19 6 3.3539 0.8132 6.2599 20 1 4.0132 -0.0420 6.2405 21 6 2.7998 1.2297 7.4518 22 7 3.0739 0.5852 8.5649 23 14 1.6600 2.7092 7.4854 24 1 0.2599 2.2603 7.2777 25 1 1.7717 3.3902 8.8003 26 1 2.0426 3.6534 6.4050 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6214 1.9759 0.8533 33 1 1.7342 1.9359 -0.9226 34 1 3.7044 3.3502 -0.8963 35 1 3.7379 3.4428 0.8810 36 1 5.7805 2.9943 2.1101 37 1 8.2423 2.9743 2.0647 38 1 9.4331 2.8573 -0.0874 39 1 8.1620 2.7515 -2.1936 40 1 5.7001 2.7632 -2.1477 41 1 3.7571 -0.1333 1.4070 42 1 3.6964 2.5993 2.5079 43 1 2.2773 1.5294 2.4096 44 1 5.5414 2.1051 4.0520 45 1 5.5821 0.5683 4.9489 46 1 5.8117 0.5750 3.1836 47 1 3.3624 2.5892 5.0766 48 1 1.9664 1.5200 4.8006 49 1 2.6844 0.8785 9.4036 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602529147.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:26 Heat of formation + Delta-G solvation = -24.365237 kcal Electronic energy + Delta-G solvation = -23670.399552 eV Core-core repulsion = 20595.164703 eV Total energy + Delta-G solvation = -3075.234849 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.46271 -39.01788 -36.88963 -34.63149 -34.14623 -32.64305 -31.59451 -30.15775 -28.90460 -27.12528 -26.74754 -24.30414 -23.29603 -23.19970 -21.68240 -21.01265 -20.35194 -18.91450 -17.51136 -16.98546 -16.54012 -16.39817 -15.97939 -15.61056 -15.48311 -15.20166 -15.02238 -14.65575 -14.23478 -14.17479 -13.93231 -13.71424 -13.66263 -13.43083 -13.34663 -12.84415 -12.80640 -12.67823 -12.36387 -12.28808 -12.18785 -12.09734 -11.81877 -11.71571 -11.61842 -11.46705 -11.45135 -11.22017 -11.09974 -10.97131 -10.73271 -9.64145 -9.40006 -9.08058 -8.26029 -6.27854 0.63807 0.69701 1.34184 1.36361 1.47905 2.37075 3.04992 3.09363 3.37086 3.82580 4.03648 4.09528 4.10459 4.20401 4.25600 4.32063 4.37714 4.41114 4.45021 4.54405 4.61401 4.67755 4.73694 4.79464 4.82296 4.91969 4.95587 4.97024 4.98658 5.02963 5.06909 5.12140 5.15245 5.28585 5.33434 5.36225 5.38604 5.41482 5.45618 5.49912 5.58978 5.73166 5.73845 5.75004 5.81476 5.94737 6.25849 6.31094 6.37645 6.62418 6.79957 7.35572 8.90914 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012316 B = 0.004706 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.003425 B = 5948.825136 C = 7567.471975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.152 4.152 4 C 0.100 3.900 5 H 0.087 0.913 6 C -0.074 4.074 7 C -0.069 4.069 8 C -0.108 4.108 9 C -0.137 4.137 10 C -0.138 4.138 11 C -0.130 4.130 12 C -0.129 4.129 13 N -0.675 5.675 14 C 0.074 3.926 15 C -0.068 4.068 16 H 0.046 0.954 17 C -0.110 4.110 18 C -0.005 4.005 19 C -0.516 4.516 20 H 0.033 0.967 21 C 0.002 3.998 22 N -0.954 5.954 23 Si 0.945 3.055 24 H -0.268 1.268 25 H -0.286 1.286 26 H -0.248 1.248 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.132 0.868 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.340 0.660 42 H 0.067 0.933 43 H 0.031 0.969 44 H 0.041 0.959 45 H 0.022 0.978 46 H 0.063 0.937 47 H 0.015 0.985 48 H 0.012 0.988 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.038 5.128 -25.124 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.191 4.191 4 C -0.010 4.010 5 H 0.105 0.895 6 C -0.112 4.112 7 C -0.069 4.069 8 C -0.126 4.126 9 C -0.156 4.156 10 C -0.155 4.155 11 C -0.148 4.148 12 C -0.146 4.146 13 N -0.306 5.306 14 C -0.055 4.055 15 C -0.087 4.087 16 H 0.064 0.936 17 C -0.167 4.167 18 C -0.043 4.043 19 C -0.554 4.554 20 H 0.052 0.948 21 C -0.194 4.194 22 N -0.596 5.596 23 Si 0.769 3.231 24 H -0.193 1.193 25 H -0.212 1.212 26 H -0.171 1.171 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.136 0.864 38 H 0.150 0.850 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.159 0.841 42 H 0.085 0.915 43 H 0.049 0.951 44 H 0.060 0.940 45 H 0.041 0.959 46 H 0.082 0.918 47 H 0.034 0.966 48 H 0.030 0.970 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.605 5.482 -24.923 25.651 hybrid contribution -1.289 -0.102 1.137 1.722 sum 1.316 5.380 -23.785 24.422 Atomic orbital electron populations 1.21741 0.95706 1.01717 1.01631 1.21498 0.96160 0.96675 1.01767 1.22312 0.96778 0.97299 1.02689 1.21547 0.92415 0.95018 0.91976 0.89454 1.20721 0.91033 0.96521 1.02915 1.19807 0.95692 0.98454 0.92953 1.21140 0.94155 0.99164 0.98184 1.21314 0.94807 1.00900 0.98534 1.21329 1.00536 1.01088 0.92594 1.21356 0.94415 1.00367 0.98613 1.21250 0.94693 1.01034 0.97660 1.60596 1.61860 1.06831 1.01292 1.21929 0.96024 0.98098 0.89469 1.20873 0.95995 0.98460 0.93395 0.93593 1.21475 0.95434 1.00207 0.99610 1.19546 0.95382 0.95837 0.93486 1.21452 1.27705 1.13731 0.92553 0.94842 1.25978 0.98290 0.99944 0.95171 1.70078 1.46909 1.43005 0.99562 0.85727 0.79385 0.80050 0.77903 1.19320 1.21196 1.17125 0.92616 0.93899 0.91842 0.90998 0.93341 0.92589 0.90226 0.89135 0.91958 0.87293 0.86422 0.85048 0.84378 0.84582 0.84087 0.91491 0.95146 0.93976 0.95891 0.91787 0.96645 0.96992 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.91 71.98 0.71 -1.94 16 2 C -0.12 -2.21 5.76 30.59 0.18 -2.04 16 3 C -0.15 -2.70 4.34 30.59 0.13 -2.57 16 4 C 0.10 1.92 2.54 44.92 0.11 2.04 16 5 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 6 C -0.07 -1.44 4.69 29.85 0.14 -1.30 16 7 C -0.07 -1.53 4.95 -19.86 -0.10 -1.63 16 8 C -0.11 -2.80 9.32 22.27 0.21 -2.59 16 9 C -0.14 -3.35 10.05 22.27 0.22 -3.13 16 10 C -0.14 -2.86 10.05 22.27 0.22 -2.64 16 11 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 12 C -0.13 -2.46 9.70 22.27 0.22 -2.24 16 13 N -0.67 -16.44 5.17 -491.56 -2.54 -18.98 16 14 C 0.07 2.18 4.21 86.30 0.36 2.54 16 15 C -0.07 -2.62 2.46 -10.79 -0.03 -2.65 16 16 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 17 C -0.11 -4.19 8.57 71.98 0.62 -3.58 16 18 C 0.00 -0.22 3.52 29.85 0.10 -0.11 16 19 C -0.52 -29.96 8.96 25.60 0.23 -29.73 16 20 H 0.03 2.15 7.30 -2.91 -0.02 2.12 16 21 C 0.00 0.13 5.47 84.66 0.46 0.59 16 22 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 23 Si 0.95 45.03 27.47 68.60 1.88 46.92 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 25 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 26 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.02 6.74 -2.38 -0.02 1.00 16 32 H 0.06 1.19 6.12 -2.39 -0.01 1.17 16 33 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.09 1.37 8.09 -2.39 -0.02 1.35 16 35 H 0.06 1.38 6.23 -2.39 -0.01 1.36 16 36 H 0.11 3.13 5.88 -2.91 -0.02 3.11 16 37 H 0.12 2.72 8.06 -2.91 -0.02 2.70 16 38 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 40 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 41 H 0.34 8.26 7.30 -89.70 -0.65 7.60 16 42 H 0.07 2.01 5.50 -2.39 -0.01 1.99 16 43 H 0.03 0.90 6.07 -2.39 -0.01 0.89 16 44 H 0.04 1.54 7.30 -2.38 -0.02 1.52 16 45 H 0.02 1.00 6.95 -2.39 -0.02 0.98 16 46 H 0.06 2.19 7.75 -2.39 -0.02 2.17 16 47 H 0.02 0.72 7.20 -2.39 -0.02 0.70 16 48 H 0.01 0.54 7.57 -2.38 -0.02 0.52 16 49 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 Total: -1.00 -65.84 375.41 3.86 -61.98 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.19 Total: 23.82 kcal Atomic # 6 Polarization: -57.21 SS G_CDS: 4.02 Total: -53.19 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -2.24 Total: -79.54 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.92 kcal Total: -65.84 3.86 -61.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602529147.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.620 kcal (2) G-P(sol) polarization free energy of solvation -65.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds