Wall clock time and date at job start Tue Mar 31 2020 06:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47040 * 2 1 4 4 C 1.53001 * 109.47062 * 177.88547 * 3 2 1 5 5 H 1.09003 * 109.46900 * 56.18330 * 4 3 2 6 6 C 1.52996 * 109.47155 * 176.18154 * 4 3 2 7 7 C 1.50695 * 109.47234 * 185.00387 * 6 4 3 8 8 C 1.38238 * 120.00223 * 269.72602 * 7 6 4 9 9 C 1.38227 * 120.00488 * 179.76346 * 8 7 6 10 10 C 1.38243 * 119.99885 * 0.51232 * 9 8 7 11 11 C 1.38232 * 119.99707 * 359.73825 * 10 9 8 12 12 C 1.38229 * 120.00195 * 0.02562 * 11 10 9 13 13 N 1.46894 * 109.47426 * 296.18392 * 4 3 2 14 14 C 1.46903 * 110.99942 * 304.47741 * 13 4 3 15 15 C 1.53000 * 109.47023 * 185.25025 * 14 13 4 16 16 H 1.09008 * 109.47047 * 55.00324 * 15 14 13 17 17 C 1.53001 * 109.47498 * 295.00080 * 15 14 13 18 18 C 1.52997 * 109.47241 * 174.99759 * 15 14 13 19 19 C 1.50693 * 109.47752 * 185.00043 * 18 15 14 20 20 H 1.08006 * 119.99888 * 0.02562 * 19 18 15 21 21 C 1.37871 * 120.00541 * 179.97438 * 19 18 15 22 22 N 1.31520 * 120.00454 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99750 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46852 * 89.99810 * 23 21 19 25 25 H 1.48506 * 109.47027 * 209.99545 * 23 21 19 26 26 H 1.48497 * 109.47069 * 329.99621 * 23 21 19 27 27 H 1.09003 * 109.46831 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46828 * 299.99533 * 1 2 3 29 29 H 1.08998 * 109.47210 * 59.99402 * 1 2 3 30 30 H 1.09007 * 109.46914 * 240.00508 * 2 1 3 31 31 H 1.08998 * 109.47609 * 120.00236 * 2 1 3 32 32 H 1.08999 * 109.46715 * 57.89021 * 3 2 1 33 33 H 1.08994 * 109.47217 * 297.88700 * 3 2 1 34 34 H 1.08999 * 109.46989 * 65.00456 * 6 4 3 35 35 H 1.09001 * 109.47188 * 305.00389 * 6 4 3 36 36 H 1.08003 * 119.99593 * 0.02562 * 8 7 6 37 37 H 1.08002 * 120.00162 * 180.23343 * 9 8 7 38 38 H 1.08002 * 119.99910 * 179.72298 * 10 9 8 39 39 H 1.08003 * 119.99754 * 179.97438 * 11 10 9 40 40 H 1.08001 * 120.00265 * 179.97438 * 12 11 10 41 41 H 1.00901 * 111.00306 * 180.52030 * 13 4 3 42 42 H 1.08989 * 109.46806 * 305.25340 * 14 13 4 43 43 H 1.08999 * 109.46668 * 65.25836 * 14 13 4 44 44 H 1.08998 * 109.46686 * 60.00112 * 17 15 14 45 45 H 1.09004 * 109.47032 * 179.97438 * 17 15 14 46 46 H 1.09001 * 109.46847 * 300.00055 * 17 15 14 47 47 H 1.08997 * 109.47307 * 305.00606 * 18 15 14 48 48 H 1.09005 * 109.46936 * 65.00211 * 18 15 14 49 49 H 0.96994 * 120.00012 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5691 1.4429 0.0532 5 1 3.9618 0.8606 -0.7804 6 6 4.0824 2.8810 -0.0427 7 6 5.5877 2.8733 -0.1141 8 6 6.3351 2.9349 1.0472 9 6 7.7157 2.9230 0.9821 10 6 8.3493 2.8602 -0.2450 11 6 7.6020 2.8038 -1.4066 12 6 6.2213 2.8108 -1.3411 13 7 4.0152 0.8472 1.3197 14 6 3.4183 1.5429 2.4677 15 6 4.0049 0.9824 3.7649 16 1 5.0922 1.0521 3.7319 17 6 3.5922 -0.4827 3.9202 18 6 3.4781 1.7893 4.9533 19 6 4.1490 1.3180 6.2176 20 1 4.8786 0.5226 6.1776 21 6 3.8324 1.9027 7.4254 22 7 4.4183 1.4916 8.5288 23 14 2.5710 3.2788 7.4946 24 1 1.2189 2.7009 7.7023 25 1 2.8967 4.1928 8.6189 26 1 2.5947 4.0367 6.2178 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6461 1.9671 0.8705 33 1 1.7080 1.9453 -0.9083 34 1 3.7632 3.4401 0.8368 35 1 3.6786 3.3519 -0.9390 36 1 5.8401 2.9881 2.0057 37 1 8.2996 2.9673 1.8896 38 1 9.4281 2.8554 -0.2961 39 1 8.0970 2.7551 -2.3652 40 1 5.6374 2.7672 -2.2487 41 1 5.0222 0.8436 1.3828 42 1 3.6371 2.6085 2.4006 43 1 2.3387 1.3924 2.4624 44 1 3.9676 -1.0575 3.0736 45 1 4.0105 -0.8820 4.8441 46 1 2.5049 -0.5523 3.9532 47 1 3.6948 2.8464 4.7993 48 1 2.4007 1.6481 5.0394 49 1 4.1952 1.9028 9.3785 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602529149.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:30 Heat of formation + Delta-G solvation = -11.838254 kcal Electronic energy + Delta-G solvation = -23629.736594 eV Core-core repulsion = 20555.044956 eV Total energy + Delta-G solvation = -3074.691638 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.76650 -37.92195 -35.35064 -33.61097 -32.44683 -31.34372 -30.89768 -28.99209 -27.23327 -26.30633 -25.36282 -22.67490 -22.51787 -22.11974 -20.84914 -19.62939 -19.23369 -16.87307 -16.72003 -15.93168 -15.43219 -15.24542 -14.70063 -14.45942 -14.27909 -13.94691 -13.75587 -13.43669 -13.33964 -12.99633 -12.82291 -12.57079 -12.46256 -12.25525 -11.95430 -11.69553 -11.52490 -11.37489 -11.29207 -10.97009 -10.94999 -10.75789 -10.66860 -10.53499 -10.47740 -10.25616 -9.74530 -9.71248 -9.37925 -9.02873 -8.96119 -8.79989 -8.50022 -8.01768 -6.00378 -3.97033 1.30533 1.35963 3.32086 3.39562 3.42733 3.73260 4.45464 4.48021 4.60572 4.79074 4.90439 4.99792 5.07346 5.12891 5.16044 5.26141 5.33349 5.39564 5.45868 5.47695 5.59442 5.63774 5.66214 5.75441 5.78860 5.89922 5.93405 5.97357 6.02156 6.06588 6.15013 6.15530 6.35744 6.39940 6.42522 6.47267 6.51292 6.54956 6.60661 6.62716 6.88718 6.97505 7.07089 7.18237 7.32148 7.37564 7.49587 7.69591 7.85145 8.59534 9.05765 9.62803 11.13122 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011185 B = 0.004914 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.721771 B = 5697.018158 C = 7403.056011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.114 4.114 4 C 0.095 3.905 5 H 0.078 0.922 6 C -0.122 4.122 7 C -0.078 4.078 8 C -0.118 4.118 9 C -0.112 4.112 10 C -0.128 4.128 11 C -0.121 4.121 12 C -0.120 4.120 13 N -0.675 5.675 14 C 0.054 3.946 15 C -0.075 4.075 16 H 0.057 0.943 17 C -0.124 4.124 18 C -0.008 4.008 19 C -0.511 4.511 20 H 0.073 0.927 21 C 0.065 3.935 22 N -0.905 5.905 23 Si 0.877 3.123 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.267 1.267 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.340 0.660 42 H 0.026 0.974 43 H 0.070 0.930 44 H 0.044 0.956 45 H 0.057 0.943 46 H 0.039 0.961 47 H 0.011 0.989 48 H 0.010 0.990 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.224 1.870 -22.083 22.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.151 4.151 4 C -0.016 4.016 5 H 0.096 0.904 6 C -0.162 4.162 7 C -0.078 4.078 8 C -0.136 4.136 9 C -0.130 4.130 10 C -0.146 4.146 11 C -0.139 4.139 12 C -0.138 4.138 13 N -0.306 5.306 14 C -0.074 4.074 15 C -0.093 4.093 16 H 0.076 0.924 17 C -0.181 4.181 18 C -0.046 4.046 19 C -0.549 4.549 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.545 5.545 23 Si 0.705 3.295 24 H -0.204 1.204 25 H -0.215 1.215 26 H -0.192 1.192 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.159 0.841 42 H 0.044 0.956 43 H 0.088 0.912 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.029 0.971 48 H 0.029 0.971 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.254 1.391 -21.896 21.941 hybrid contribution -0.083 1.706 0.244 1.725 sum -0.337 3.097 -21.652 21.875 Atomic orbital electron populations 1.21796 0.96691 1.01256 1.01277 1.21420 0.94629 0.96533 1.02846 1.21706 0.94072 0.97711 1.01655 1.21592 0.95132 0.91316 0.93552 0.90412 1.21446 0.91301 1.00138 1.03270 1.19870 0.95554 0.99198 0.93161 1.21247 0.94133 0.99886 0.98308 1.21222 0.94741 0.99151 0.97898 1.21138 0.99745 1.00999 0.92694 1.21095 0.94033 1.00578 0.98208 1.20994 0.94525 1.01214 0.97093 1.60716 1.13669 1.55348 1.00872 1.22281 0.99739 0.95064 0.90345 1.21023 0.99262 0.96232 0.92823 0.92448 1.21595 1.00043 0.95769 1.00728 1.19599 0.96083 0.94949 0.93968 1.21134 1.23887 1.19972 0.89917 0.90858 1.25020 0.96026 0.96740 0.95747 1.69916 1.43346 1.42767 0.98458 0.86827 0.82220 0.82796 0.77703 1.20372 1.21536 1.19174 0.93054 0.92862 0.93446 0.92768 0.90202 0.91522 0.92378 0.90385 0.90926 0.85681 0.85868 0.86350 0.86424 0.86443 0.84063 0.95621 0.91173 0.93737 0.92370 0.94221 0.97098 0.97128 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.16 0.37 -1.17 16 2 C -0.12 -1.28 5.84 -26.73 -0.16 -1.44 16 3 C -0.11 -1.22 4.32 -26.73 -0.12 -1.34 16 4 C 0.09 1.06 2.56 -67.72 -0.17 0.89 16 5 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 6 C -0.12 -1.34 4.72 -27.89 -0.13 -1.47 16 7 C -0.08 -0.90 4.72 -104.62 -0.49 -1.39 16 8 C -0.12 -1.49 8.28 -39.59 -0.33 -1.82 16 9 C -0.11 -1.33 10.05 -39.58 -0.40 -1.73 16 10 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 11 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 12 C -0.12 -1.26 9.70 -39.58 -0.38 -1.65 16 13 N -0.68 -9.02 5.26 -106.73 -0.56 -9.58 16 14 C 0.05 0.85 4.09 -3.82 -0.02 0.83 16 15 C -0.07 -1.43 2.43 -90.62 -0.22 -1.65 16 16 H 0.06 1.14 8.12 -51.92 -0.42 0.72 16 17 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 18 C -0.01 -0.19 3.52 -27.89 -0.10 -0.29 16 19 C -0.51 -14.37 8.96 -34.45 -0.31 -14.68 16 20 H 0.07 2.22 7.30 -52.48 -0.38 1.84 16 21 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 22 N -0.91 -27.99 13.96 55.43 0.77 -27.21 16 23 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 1.04 7.66 -51.93 -0.40 0.64 16 32 H 0.07 0.80 6.24 -51.93 -0.32 0.47 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.95 6.12 -51.93 -0.32 0.63 16 35 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 36 H 0.13 1.73 7.45 -52.48 -0.39 1.34 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.34 4.72 6.73 -39.29 -0.26 4.45 16 42 H 0.03 0.40 5.62 -51.93 -0.29 0.11 16 43 H 0.07 1.12 6.46 -51.93 -0.34 0.78 16 44 H 0.04 0.76 7.75 -51.93 -0.40 0.35 16 45 H 0.06 1.24 6.95 -51.93 -0.36 0.87 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.01 0.26 7.20 -51.93 -0.37 -0.12 16 48 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 49 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 377.78 15.07 5.69 5.69 Total: -1.00 -29.64 377.78 -10.68 -40.31 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -8.89 Total: 4.09 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: -3.02 Total: -30.49 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.21 Total: -36.80 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.64 -10.68 -40.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602529149.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.475 kcal (2) G-P(sol) polarization free energy of solvation -29.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds