Wall clock time and date at job start Tue Mar 31 2020 06:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47040 * 2 1 4 4 C 1.53001 * 109.47062 * 177.88547 * 3 2 1 5 5 H 1.09003 * 109.46900 * 56.18330 * 4 3 2 6 6 C 1.52996 * 109.47155 * 176.18154 * 4 3 2 7 7 C 1.50695 * 109.47234 * 185.00387 * 6 4 3 8 8 C 1.38238 * 120.00223 * 269.72602 * 7 6 4 9 9 C 1.38227 * 120.00488 * 179.76346 * 8 7 6 10 10 C 1.38243 * 119.99885 * 0.51232 * 9 8 7 11 11 C 1.38232 * 119.99707 * 359.73825 * 10 9 8 12 12 C 1.38229 * 120.00195 * 0.02562 * 11 10 9 13 13 N 1.46894 * 109.47426 * 296.18392 * 4 3 2 14 14 C 1.46903 * 110.99942 * 304.47741 * 13 4 3 15 15 C 1.53000 * 109.47023 * 185.25025 * 14 13 4 16 16 H 1.09008 * 109.47047 * 55.00324 * 15 14 13 17 17 C 1.53001 * 109.47498 * 295.00080 * 15 14 13 18 18 C 1.52997 * 109.47241 * 174.99759 * 15 14 13 19 19 C 1.50693 * 109.47752 * 185.00043 * 18 15 14 20 20 H 1.08006 * 119.99888 * 0.02562 * 19 18 15 21 21 C 1.37871 * 120.00541 * 179.97438 * 19 18 15 22 22 N 1.31520 * 120.00454 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99750 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46852 * 89.99810 * 23 21 19 25 25 H 1.48506 * 109.47027 * 209.99545 * 23 21 19 26 26 H 1.48497 * 109.47069 * 329.99621 * 23 21 19 27 27 H 1.09003 * 109.46831 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46828 * 299.99533 * 1 2 3 29 29 H 1.08998 * 109.47210 * 59.99402 * 1 2 3 30 30 H 1.09007 * 109.46914 * 240.00508 * 2 1 3 31 31 H 1.08998 * 109.47609 * 120.00236 * 2 1 3 32 32 H 1.08999 * 109.46715 * 57.89021 * 3 2 1 33 33 H 1.08994 * 109.47217 * 297.88700 * 3 2 1 34 34 H 1.08999 * 109.46989 * 65.00456 * 6 4 3 35 35 H 1.09001 * 109.47188 * 305.00389 * 6 4 3 36 36 H 1.08003 * 119.99593 * 0.02562 * 8 7 6 37 37 H 1.08002 * 120.00162 * 180.23343 * 9 8 7 38 38 H 1.08002 * 119.99910 * 179.72298 * 10 9 8 39 39 H 1.08003 * 119.99754 * 179.97438 * 11 10 9 40 40 H 1.08001 * 120.00265 * 179.97438 * 12 11 10 41 41 H 1.00901 * 111.00306 * 180.52030 * 13 4 3 42 42 H 1.08989 * 109.46806 * 305.25340 * 14 13 4 43 43 H 1.08999 * 109.46668 * 65.25836 * 14 13 4 44 44 H 1.08998 * 109.46686 * 60.00112 * 17 15 14 45 45 H 1.09004 * 109.47032 * 179.97438 * 17 15 14 46 46 H 1.09001 * 109.46847 * 300.00055 * 17 15 14 47 47 H 1.08997 * 109.47307 * 305.00606 * 18 15 14 48 48 H 1.09005 * 109.46936 * 65.00211 * 18 15 14 49 49 H 0.96994 * 120.00012 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5691 1.4429 0.0532 5 1 3.9618 0.8606 -0.7804 6 6 4.0824 2.8810 -0.0427 7 6 5.5877 2.8733 -0.1141 8 6 6.3351 2.9349 1.0472 9 6 7.7157 2.9230 0.9821 10 6 8.3493 2.8602 -0.2450 11 6 7.6020 2.8038 -1.4066 12 6 6.2213 2.8108 -1.3411 13 7 4.0152 0.8472 1.3197 14 6 3.4183 1.5429 2.4677 15 6 4.0049 0.9824 3.7649 16 1 5.0922 1.0521 3.7319 17 6 3.5922 -0.4827 3.9202 18 6 3.4781 1.7893 4.9533 19 6 4.1490 1.3180 6.2176 20 1 4.8786 0.5226 6.1776 21 6 3.8324 1.9027 7.4254 22 7 4.4183 1.4916 8.5288 23 14 2.5710 3.2788 7.4946 24 1 1.2189 2.7009 7.7023 25 1 2.8967 4.1928 8.6189 26 1 2.5947 4.0367 6.2178 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6461 1.9671 0.8705 33 1 1.7080 1.9453 -0.9083 34 1 3.7632 3.4401 0.8368 35 1 3.6786 3.3519 -0.9390 36 1 5.8401 2.9881 2.0057 37 1 8.2996 2.9673 1.8896 38 1 9.4281 2.8554 -0.2961 39 1 8.0970 2.7551 -2.3652 40 1 5.6374 2.7672 -2.2487 41 1 5.0222 0.8436 1.3828 42 1 3.6371 2.6085 2.4006 43 1 2.3387 1.3924 2.4624 44 1 3.9676 -1.0575 3.0736 45 1 4.0105 -0.8820 4.8441 46 1 2.5049 -0.5523 3.9532 47 1 3.6948 2.8464 4.7993 48 1 2.4007 1.6481 5.0394 49 1 4.1952 1.9028 9.3785 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602529149.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:29 Heat of formation + Delta-G solvation = -26.325313 kcal Electronic energy + Delta-G solvation = -23630.364800 eV Core-core repulsion = 20555.044956 eV Total energy + Delta-G solvation = -3075.319844 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.66735 -38.95308 -36.85538 -34.69180 -34.22012 -32.57116 -31.73323 -30.19352 -28.96199 -27.13010 -26.77550 -24.31080 -23.44501 -23.06874 -21.68917 -21.01018 -20.49692 -18.92500 -17.60811 -17.05172 -16.48400 -16.39751 -16.06141 -15.62916 -15.48102 -15.27333 -14.84596 -14.70964 -14.40032 -14.19890 -14.03380 -13.82000 -13.63170 -13.42465 -13.35646 -12.88014 -12.79898 -12.75901 -12.40451 -12.21852 -12.21142 -12.17102 -11.78666 -11.71329 -11.64408 -11.42917 -11.31859 -11.28530 -11.08938 -10.99404 -10.73930 -9.81788 -9.67925 -9.08137 -8.26239 -6.28186 0.46680 0.51081 1.34454 1.35798 1.47372 2.36750 2.88842 3.09029 3.38156 3.73737 3.96532 4.05441 4.13958 4.19107 4.24479 4.27297 4.35220 4.36847 4.39095 4.52654 4.59332 4.63916 4.66085 4.78189 4.82580 4.86952 4.91043 4.95263 5.00953 5.07519 5.12008 5.12686 5.15346 5.19316 5.30884 5.35511 5.40315 5.42447 5.54835 5.56285 5.60825 5.65642 5.66201 5.72101 5.74403 5.75613 6.15275 6.24036 6.36629 6.55890 6.79379 7.35263 8.90624 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011185 B = 0.004914 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.721771 B = 5697.018158 C = 7403.056011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.110 4.110 4 C 0.099 3.901 5 H 0.088 0.912 6 C -0.116 4.116 7 C -0.085 4.085 8 C -0.137 4.137 9 C -0.130 4.130 10 C -0.132 4.132 11 C -0.121 4.121 12 C -0.122 4.122 13 N -0.675 5.675 14 C 0.073 3.927 15 C -0.069 4.069 16 H 0.044 0.956 17 C -0.114 4.114 18 C -0.004 4.004 19 C -0.516 4.516 20 H 0.034 0.966 21 C 0.003 3.997 22 N -0.954 5.954 23 Si 0.945 3.055 24 H -0.267 1.267 25 H -0.286 1.286 26 H -0.249 1.249 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.337 0.663 42 H 0.026 0.974 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.024 0.976 46 H 0.043 0.957 47 H 0.012 0.988 48 H 0.015 0.985 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.944 2.933 -25.365 25.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.148 4.148 4 C -0.011 4.011 5 H 0.106 0.894 6 C -0.155 4.155 7 C -0.085 4.085 8 C -0.156 4.156 9 C -0.148 4.148 10 C -0.150 4.150 11 C -0.139 4.139 12 C -0.140 4.140 13 N -0.306 5.306 14 C -0.056 4.056 15 C -0.088 4.088 16 H 0.062 0.938 17 C -0.171 4.171 18 C -0.042 4.042 19 C -0.554 4.554 20 H 0.052 0.948 21 C -0.193 4.193 22 N -0.595 5.595 23 Si 0.769 3.231 24 H -0.193 1.193 25 H -0.212 1.212 26 H -0.172 1.172 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.122 0.878 37 H 0.139 0.861 38 H 0.156 0.844 39 H 0.163 0.837 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.044 0.956 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.043 0.957 46 H 0.062 0.938 47 H 0.031 0.969 48 H 0.033 0.967 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.424 2.449 -25.202 25.360 hybrid contribution 0.387 1.294 1.231 1.827 sum -1.037 3.742 -23.971 24.284 Atomic orbital electron populations 1.21776 0.96027 1.01534 1.01508 1.21375 0.95219 0.96486 1.02109 1.21695 0.93410 0.97592 1.02113 1.21638 0.95573 0.91577 0.92320 0.89428 1.21382 0.90959 0.99650 1.03504 1.19961 0.95850 0.99415 0.93239 1.21188 0.94672 1.01647 0.98059 1.21353 0.94666 1.00026 0.98783 1.21411 1.00932 1.00358 0.92321 1.21463 0.94081 0.99228 0.99110 1.21294 0.95053 1.00319 0.97337 1.60685 1.13400 1.55320 1.01161 1.21950 0.99471 0.94923 0.89254 1.20893 0.98546 0.95951 0.93438 0.93751 1.21481 1.00079 0.95733 0.99823 1.19538 0.95809 0.95417 0.93442 1.21439 1.23084 1.18758 0.92158 0.94810 1.25966 0.98423 0.99685 0.95247 1.70073 1.45465 1.44703 0.99257 0.85731 0.79426 0.79445 0.78481 1.19256 1.21175 1.17233 0.92818 0.93732 0.92082 0.91914 0.92489 0.92768 0.90297 0.91925 0.88883 0.87803 0.86096 0.84447 0.83727 0.84126 0.84391 0.95585 0.90941 0.91722 0.95667 0.93765 0.96922 0.96666 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.91 71.98 0.71 -2.00 16 2 C -0.11 -2.25 5.84 30.60 0.18 -2.07 16 3 C -0.11 -2.08 4.32 30.60 0.13 -1.95 16 4 C 0.10 1.99 2.56 44.92 0.12 2.11 16 5 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 6 C -0.12 -2.29 4.72 29.84 0.14 -2.14 16 7 C -0.08 -1.83 4.72 -19.87 -0.09 -1.92 16 8 C -0.14 -3.51 8.28 22.27 0.18 -3.32 16 9 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 10 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 11 C -0.12 -2.09 10.05 22.27 0.22 -1.87 16 12 C -0.12 -2.21 9.70 22.27 0.22 -2.00 16 13 N -0.68 -17.33 5.26 -491.59 -2.59 -19.92 16 14 C 0.07 2.23 4.09 86.30 0.35 2.58 16 15 C -0.07 -2.71 2.43 -10.79 -0.03 -2.73 16 16 H 0.04 1.83 8.12 -2.38 -0.02 1.81 16 17 C -0.11 -4.39 8.89 71.98 0.64 -3.75 16 18 C 0.00 -0.20 3.52 29.84 0.10 -0.09 16 19 C -0.52 -30.06 8.96 25.60 0.23 -29.83 16 20 H 0.03 2.17 7.30 -2.91 -0.02 2.15 16 21 C 0.00 0.17 5.47 84.65 0.46 0.63 16 22 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 23 Si 0.95 45.16 27.47 68.60 1.88 47.05 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 26 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.06 1.39 7.66 -2.39 -0.02 1.37 16 32 H 0.05 1.18 6.24 -2.39 -0.01 1.16 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 1.44 6.12 -2.39 -0.01 1.43 16 35 H 0.09 1.46 8.09 -2.39 -0.02 1.44 16 36 H 0.10 3.01 7.45 -2.91 -0.02 2.99 16 37 H 0.12 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 39 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 41 H 0.34 9.20 6.73 -89.69 -0.60 8.59 16 42 H 0.03 0.80 5.62 -2.39 -0.01 0.79 16 43 H 0.07 2.21 6.46 -2.39 -0.02 2.19 16 44 H 0.06 2.20 7.75 -2.39 -0.02 2.18 16 45 H 0.02 1.10 6.95 -2.39 -0.02 1.08 16 46 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 48 H 0.02 0.70 7.57 -2.38 -0.02 0.68 16 49 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -65.65 377.78 3.85 -61.79 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.23 Total: 25.22 kcal Atomic # 6 Polarization: -57.61 SS G_CDS: 4.02 Total: -53.59 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -2.29 Total: -80.48 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.05 kcal Total: -65.65 3.85 -61.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602529149.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.469 kcal (2) G-P(sol) polarization free energy of solvation -65.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds