Wall clock time and date at job start Tue Mar 31 2020 06:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47144 * 90.00302 * 9 7 5 11 11 H 1.48507 * 109.46867 * 209.99975 * 9 7 5 12 12 H 1.48496 * 109.47175 * 330.00050 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47074 * 179.97438 * 16 15 14 18 18 C 1.53006 * 109.47074 * 179.97438 * 17 16 15 19 19 C 1.52991 * 109.47277 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47237 * 180.02562 * 19 18 17 21 21 C 1.38242 * 119.99887 * 269.71997 * 20 19 18 22 22 C 1.38232 * 120.00093 * 179.76129 * 21 20 19 23 23 C 1.38244 * 119.99885 * 0.51794 * 22 21 20 24 24 C 1.38237 * 120.00025 * 359.73844 * 23 22 21 25 25 C 1.38232 * 119.99774 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 30 30 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 31 31 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 33 33 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 34 34 H 1.00905 * 110.99804 * 303.95405 * 14 13 2 35 35 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 36 36 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 37 37 H 1.09001 * 109.46816 * 300.00451 * 16 15 14 38 38 H 1.09001 * 109.46992 * 59.99871 * 16 15 14 39 39 H 1.08991 * 109.47010 * 299.99707 * 17 16 15 40 40 H 1.09001 * 109.47270 * 60.00098 * 17 16 15 41 41 H 1.09001 * 109.46816 * 300.00508 * 18 17 16 42 42 H 1.09001 * 109.46992 * 59.99928 * 18 17 16 43 43 H 1.09001 * 109.47359 * 299.99865 * 19 18 17 44 44 H 1.09001 * 109.47422 * 59.99881 * 19 18 17 45 45 H 1.08000 * 119.99537 * 0.02562 * 21 20 19 46 46 H 1.07997 * 120.00398 * 180.22849 * 22 21 20 47 47 H 1.07999 * 119.99788 * 179.72327 * 23 22 21 48 48 H 1.07993 * 120.00230 * 179.97438 * 24 23 22 49 49 H 1.08007 * 120.00030 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 2.5654 1.5429 -5.5817 11 1 1.3132 -0.3705 -6.3891 12 1 0.2286 1.2846 -4.9873 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 6 2.1967 -0.5003 6.1614 18 6 1.7749 0.3181 7.3834 19 6 2.2689 -0.3733 8.6556 20 6 1.8529 0.4325 9.8592 21 6 2.6876 1.4171 10.3540 22 6 2.3039 2.1596 11.4550 23 6 1.0901 1.9102 12.0679 24 6 0.2577 0.9220 11.5764 25 6 0.6393 0.1829 10.4724 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.1264 -0.7995 -1.2055 30 1 1.6055 -1.7198 -1.2951 31 1 2.9246 -1.8413 -4.7316 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 1.9881 0.9873 2.3966 35 1 1.6920 -1.6245 3.7300 36 1 3.2126 -0.7037 3.6401 37 1 2.1373 1.1894 4.8260 38 1 0.6164 0.2691 4.9165 39 1 1.7623 -1.4979 6.2243 40 1 3.2836 -0.5783 6.1344 41 1 2.2096 1.3157 7.3202 42 1 0.6881 0.3965 7.4107 43 1 1.8345 -1.3710 8.7190 44 1 3.3558 -0.4513 8.6282 45 1 3.6377 1.6091 9.8776 46 1 2.9543 2.9313 11.8393 47 1 0.7923 2.4873 12.9308 48 1 -0.6903 0.7269 12.0554 49 1 -0.0108 -0.5895 10.0886 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602529400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:14 Heat of formation + Delta-G solvation = -25.860688 kcal Electronic energy + Delta-G solvation = -21164.758386 eV Core-core repulsion = 18089.458690 eV Total energy + Delta-G solvation = -3075.299697 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.65544 -37.34854 -36.01600 -34.24410 -32.62276 -31.57538 -31.22673 -29.19078 -26.85634 -25.99751 -24.43447 -22.91348 -22.64247 -21.84855 -21.17722 -20.98699 -18.97218 -17.09988 -16.30766 -16.22949 -15.58561 -15.52925 -14.90274 -14.64095 -14.27006 -14.23417 -13.81373 -13.68773 -13.60829 -13.46634 -12.82628 -12.56698 -12.34010 -12.16560 -12.02357 -11.60655 -11.44279 -11.42840 -11.33769 -11.18332 -11.02345 -10.85392 -10.79927 -10.73913 -10.58909 -10.26383 -10.16359 -9.66792 -9.26590 -9.11717 -9.00784 -8.91373 -8.30714 -8.06753 -5.95499 -3.96541 1.01641 1.05626 3.34432 3.40646 3.43635 3.44333 4.26276 4.47037 4.47339 4.53568 4.66623 4.74024 4.77901 4.92184 4.96983 5.02748 5.17764 5.23067 5.32960 5.40246 5.42749 5.47762 5.62019 5.63187 5.68275 5.74886 5.76697 5.82113 5.83963 5.95372 6.00612 6.13032 6.17372 6.19143 6.21075 6.26001 6.32466 6.45753 6.59409 6.67117 6.72711 7.05351 7.21824 7.23655 7.42345 7.69377 7.73601 7.88550 8.04958 8.49185 9.09896 9.66713 11.16050 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.048397 B = 0.001629 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.406060 B =17186.314471 C =17299.546298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.690 5.690 15 C 0.058 3.942 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.112 4.112 19 C -0.083 4.083 20 C -0.078 4.078 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.119 4.119 25 C -0.119 4.119 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.259 0.741 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.336 0.664 35 H 0.068 0.932 36 H 0.023 0.977 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.254 4.051 31.521 31.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 H 0.071 0.929 4 C -0.011 4.011 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.320 5.320 15 C -0.072 4.072 16 C -0.154 4.154 17 C -0.156 4.156 18 C -0.149 4.149 19 C -0.121 4.121 20 C -0.078 4.078 21 C -0.137 4.137 22 C -0.137 4.137 23 C -0.147 4.147 24 C -0.137 4.137 25 C -0.137 4.137 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.153 0.847 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.809 3.637 31.413 31.675 hybrid contribution 0.794 0.641 -0.940 1.387 sum -1.015 4.278 30.473 30.789 Atomic orbital electron populations 1.21584 0.95733 1.00541 1.00117 1.21204 0.96014 0.98891 0.94086 0.92884 1.19126 0.95894 0.95592 0.90472 1.21252 1.34556 1.08264 0.91014 0.92557 1.25025 0.95364 0.95100 0.99098 1.69968 1.39135 1.21262 1.23339 0.86623 0.78913 0.79796 0.82839 1.20785 1.21306 1.19887 1.22145 0.97074 0.97714 0.89559 1.60546 1.64055 1.05725 1.01669 1.21952 0.96956 0.98382 0.89915 1.21563 1.01872 0.98867 0.93142 1.21568 1.00961 0.99307 0.93795 1.21563 1.01301 0.99210 0.92837 1.20668 1.01412 0.98241 0.91737 1.19979 0.94512 0.96703 0.96633 1.21088 0.99762 0.96071 0.96789 1.21162 0.96728 0.99563 0.96244 1.21152 0.94839 0.98414 1.00266 1.21163 0.99635 0.96166 0.96715 1.21093 0.96278 1.00122 0.96182 0.92802 0.94201 0.93944 0.96954 0.96554 0.93130 0.91647 0.95891 0.84709 0.91399 0.95846 0.92286 0.91174 0.91839 0.92087 0.91885 0.91750 0.90925 0.90975 0.86123 0.86172 0.86265 0.86155 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 8.89 37.16 0.33 -2.11 16 2 C -0.08 -1.74 2.48 -90.62 -0.22 -1.96 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.56 8.41 -34.44 -0.29 -14.85 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.06 1.14 5.07 -3.83 -0.02 1.12 16 14 N -0.69 -10.27 5.96 -113.78 -0.68 -10.95 16 15 C 0.06 0.71 5.69 -3.82 -0.02 0.69 16 16 C -0.12 -1.17 5.47 -26.73 -0.15 -1.31 16 17 C -0.12 -0.97 5.21 -26.73 -0.14 -1.11 16 18 C -0.11 -0.85 5.20 -26.73 -0.14 -0.98 16 19 C -0.08 -0.58 5.35 -27.89 -0.15 -0.73 16 20 C -0.08 -0.62 5.13 -104.62 -0.54 -1.15 16 21 C -0.12 -0.91 9.70 -39.58 -0.38 -1.30 16 22 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 23 C -0.13 -0.90 10.05 -39.58 -0.40 -1.30 16 24 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 25 C -0.12 -0.91 9.70 -39.58 -0.38 -1.30 16 26 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.02 0.42 8.14 -51.92 -0.42 -0.01 16 34 H 0.34 4.74 8.73 -39.29 -0.34 4.40 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 44 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 45 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 46 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 47 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 48 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 49 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 LS Contribution 395.70 15.07 5.96 5.96 Total: -1.00 -30.50 395.70 -12.00 -42.50 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -9.48 Total: -1.13 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -3.52 Total: -26.75 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.06 Total: -37.46 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.50 -12.00 -42.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602529400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.642 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds