Wall clock time and date at job start Tue Mar 31 2020 06:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47144 * 90.00302 * 9 7 5 11 11 H 1.48507 * 109.46867 * 209.99975 * 9 7 5 12 12 H 1.48496 * 109.47175 * 330.00050 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47074 * 179.97438 * 16 15 14 18 18 C 1.53006 * 109.47074 * 179.97438 * 17 16 15 19 19 C 1.52991 * 109.47277 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47237 * 180.02562 * 19 18 17 21 21 C 1.38242 * 119.99887 * 269.71997 * 20 19 18 22 22 C 1.38232 * 120.00093 * 179.76129 * 21 20 19 23 23 C 1.38244 * 119.99885 * 0.51794 * 22 21 20 24 24 C 1.38237 * 120.00025 * 359.73844 * 23 22 21 25 25 C 1.38232 * 119.99774 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 30 30 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 31 31 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 33 33 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 34 34 H 1.00905 * 110.99804 * 303.95405 * 14 13 2 35 35 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 36 36 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 37 37 H 1.09001 * 109.46816 * 300.00451 * 16 15 14 38 38 H 1.09001 * 109.46992 * 59.99871 * 16 15 14 39 39 H 1.08991 * 109.47010 * 299.99707 * 17 16 15 40 40 H 1.09001 * 109.47270 * 60.00098 * 17 16 15 41 41 H 1.09001 * 109.46816 * 300.00508 * 18 17 16 42 42 H 1.09001 * 109.46992 * 59.99928 * 18 17 16 43 43 H 1.09001 * 109.47359 * 299.99865 * 19 18 17 44 44 H 1.09001 * 109.47422 * 59.99881 * 19 18 17 45 45 H 1.08000 * 119.99537 * 0.02562 * 21 20 19 46 46 H 1.07997 * 120.00398 * 180.22849 * 22 21 20 47 47 H 1.07999 * 119.99788 * 179.72327 * 23 22 21 48 48 H 1.07993 * 120.00230 * 179.97438 * 24 23 22 49 49 H 1.08007 * 120.00030 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 2.5654 1.5429 -5.5817 11 1 1.3132 -0.3705 -6.3891 12 1 0.2286 1.2846 -4.9873 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 6 2.1967 -0.5003 6.1614 18 6 1.7749 0.3181 7.3834 19 6 2.2689 -0.3733 8.6556 20 6 1.8529 0.4325 9.8592 21 6 2.6876 1.4171 10.3540 22 6 2.3039 2.1596 11.4550 23 6 1.0901 1.9102 12.0679 24 6 0.2577 0.9220 11.5764 25 6 0.6393 0.1829 10.4724 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.1264 -0.7995 -1.2055 30 1 1.6055 -1.7198 -1.2951 31 1 2.9246 -1.8413 -4.7316 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 1.9881 0.9873 2.3966 35 1 1.6920 -1.6245 3.7300 36 1 3.2126 -0.7037 3.6401 37 1 2.1373 1.1894 4.8260 38 1 0.6164 0.2691 4.9165 39 1 1.7623 -1.4979 6.2243 40 1 3.2836 -0.5783 6.1344 41 1 2.2096 1.3157 7.3202 42 1 0.6881 0.3965 7.4107 43 1 1.8345 -1.3710 8.7190 44 1 3.3558 -0.4513 8.6282 45 1 3.6377 1.6091 9.8776 46 1 2.9543 2.9313 11.8393 47 1 0.7923 2.4873 12.9308 48 1 -0.6903 0.7269 12.0554 49 1 -0.0108 -0.5895 10.0886 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602529400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:13 Heat of formation + Delta-G solvation = -39.953845 kcal Electronic energy + Delta-G solvation = -21165.369511 eV Core-core repulsion = 18089.458690 eV Total energy + Delta-G solvation = -3075.910822 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.17017 -38.60912 -37.05709 -35.57104 -34.20888 -32.80102 -31.73659 -30.10411 -28.74217 -27.14463 -25.79335 -24.15165 -23.42899 -22.90276 -21.97821 -21.57193 -20.65546 -18.48115 -17.59843 -17.08570 -16.61008 -16.40230 -16.07043 -15.73378 -15.66781 -15.50755 -14.79550 -14.47614 -14.36565 -14.25110 -14.09428 -13.99667 -13.48629 -13.31985 -13.07249 -12.94418 -12.81279 -12.73469 -12.54936 -12.25759 -12.21054 -12.01871 -11.93285 -11.91325 -11.67092 -11.50208 -11.46884 -11.32692 -11.08826 -10.85086 -10.53315 -9.79666 -9.54386 -9.31074 -8.17345 -6.26710 0.48363 0.52489 1.40500 1.41659 1.52857 2.42379 2.90043 3.15958 3.25458 3.82561 3.94715 4.05042 4.12767 4.17427 4.24527 4.26153 4.28942 4.33106 4.38897 4.53484 4.60905 4.64676 4.69066 4.69652 4.80876 4.87807 4.90599 4.96484 4.99396 5.01498 5.03580 5.10687 5.21728 5.23227 5.27898 5.32443 5.45113 5.46896 5.50751 5.52615 5.56846 5.61277 5.65727 5.78108 5.81143 5.88691 6.10562 6.16686 6.31755 6.52951 6.89231 7.41619 8.94720 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.048397 B = 0.001629 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.406060 B =17186.314471 C =17299.546298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 H 0.054 0.946 4 C 0.031 3.969 5 C -0.530 4.530 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.963 3.037 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.263 1.263 13 C 0.077 3.923 14 N -0.688 5.688 15 C 0.058 3.942 16 C -0.108 4.108 17 C -0.112 4.112 18 C -0.104 4.104 19 C -0.079 4.079 20 C -0.091 4.091 21 C -0.133 4.133 22 C -0.129 4.129 23 C -0.138 4.138 24 C -0.129 4.129 25 C -0.133 4.133 26 H 0.037 0.963 27 H 0.034 0.966 28 H 0.067 0.933 29 H -0.014 1.014 30 H -0.010 1.010 31 H 0.262 0.738 32 H 0.060 0.940 33 H 0.016 0.984 34 H 0.342 0.658 35 H 0.065 0.935 36 H 0.026 0.974 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.129 0.871 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.136 0.864 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.846 5.246 32.546 33.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.006 4.006 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.188 1.188 13 C -0.053 4.053 14 N -0.319 5.319 15 C -0.071 4.071 16 C -0.146 4.146 17 C -0.150 4.150 18 C -0.142 4.142 19 C -0.116 4.116 20 C -0.091 4.091 21 C -0.151 4.151 22 C -0.147 4.147 23 C -0.156 4.156 24 C -0.147 4.147 25 C -0.151 4.151 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.004 0.996 30 H 0.008 0.992 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.035 0.965 34 H 0.160 0.840 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.147 0.853 46 H 0.154 0.846 47 H 0.155 0.845 48 H 0.154 0.846 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.405 4.845 32.460 32.908 hybrid contribution 0.993 0.254 -1.201 1.579 sum -1.412 5.099 31.259 31.704 Atomic orbital electron populations 1.21481 0.94675 1.00339 1.00502 1.21029 0.96756 0.98439 0.93199 0.92760 1.19023 0.94084 0.94715 0.92795 1.21654 1.34491 1.08603 0.92101 0.92054 1.25968 0.95246 0.96107 1.02691 1.70104 1.40276 1.22967 1.24279 0.85483 0.79005 0.78348 0.78429 1.19878 1.20899 1.18753 1.21844 0.96427 0.97350 0.89640 1.60488 1.64182 1.05930 1.01335 1.22023 0.97070 0.98523 0.89531 1.21483 1.01543 0.98783 0.92773 1.21510 1.01164 0.99300 0.93059 1.21473 1.00941 0.98967 0.92830 1.20629 1.01680 0.98215 0.91101 1.20141 0.94804 0.97069 0.97078 1.21313 1.00274 0.96292 0.97232 1.21448 0.97174 0.99896 0.96170 1.21456 0.94801 0.98532 1.00822 1.21447 1.00415 0.96115 0.96698 1.21316 0.96547 1.00643 0.96601 0.94348 0.94692 0.91457 0.99589 0.99202 0.92950 0.92193 0.96547 0.83987 0.91624 0.95611 0.91952 0.91663 0.91560 0.91674 0.92204 0.92211 0.90519 0.90521 0.85279 0.84607 0.84521 0.84604 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.40 8.89 71.98 0.64 -3.76 16 2 C -0.08 -3.14 2.48 -10.79 -0.03 -3.17 16 3 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 4 C 0.03 1.68 4.45 29.85 0.13 1.82 16 5 C -0.53 -30.43 8.41 25.60 0.22 -30.22 16 6 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 7 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 8 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 9 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 13 C 0.08 2.70 5.07 86.30 0.44 3.14 16 14 N -0.69 -19.48 5.96 -513.89 -3.06 -22.54 16 15 C 0.06 1.33 5.69 86.30 0.49 1.82 16 16 C -0.11 -1.97 5.47 30.59 0.17 -1.80 16 17 C -0.11 -1.65 5.21 30.59 0.16 -1.49 16 18 C -0.10 -1.44 5.20 30.59 0.16 -1.28 16 19 C -0.08 -1.00 5.35 29.84 0.16 -0.84 16 20 C -0.09 -1.35 5.13 -19.86 -0.10 -1.46 16 21 C -0.13 -1.92 9.70 22.27 0.22 -1.71 16 22 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 23 C -0.14 -1.77 10.05 22.27 0.22 -1.54 16 24 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 25 C -0.13 -1.93 9.70 22.27 0.22 -1.71 16 26 H 0.04 1.59 6.95 -2.39 -0.02 1.57 16 27 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 2.28 7.75 -2.39 -0.02 2.26 16 29 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 30 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 32 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.02 0.59 8.14 -2.38 -0.02 0.58 16 34 H 0.34 9.05 8.73 -89.69 -0.78 8.27 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 44 H 0.08 0.89 8.08 -2.39 -0.02 0.88 16 45 H 0.13 1.52 8.06 -2.91 -0.02 1.50 16 46 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 47 H 0.14 1.16 8.06 -2.91 -0.02 1.13 16 48 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 49 H 0.13 1.54 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -65.12 395.70 3.33 -61.78 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.08 Total: 16.24 kcal Atomic # 6 Polarization: -48.89 SS G_CDS: 4.00 Total: -44.89 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: -2.78 Total: -80.03 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -65.12 3.33 -61.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602529400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.830 kcal (2) G-P(sol) polarization free energy of solvation -65.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds