Wall clock time and date at job start Tue Mar 31 2020 06:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46727 * 2 1 4 4 C 1.53002 * 109.46841 * 240.00034 * 2 1 3 5 5 C 1.50703 * 109.46887 * 65.00196 * 4 2 1 6 6 H 1.07997 * 120.00321 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99831 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99768 * 359.72395 * 7 5 4 9 9 Si 1.86797 * 119.99829 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47122 * 179.72555 * 9 7 5 11 11 H 1.48501 * 109.47091 * 299.72213 * 9 7 5 12 12 H 1.48500 * 109.47209 * 59.72397 * 9 7 5 13 13 C 1.52995 * 109.47192 * 119.99990 * 2 1 3 14 14 N 1.46902 * 109.47288 * 295.00291 * 13 2 1 15 15 C 1.46902 * 110.99700 * 180.02562 * 14 13 2 16 16 H 1.08997 * 109.47625 * 34.99258 * 15 14 13 17 17 C 1.53005 * 109.46935 * 274.99502 * 15 14 13 18 18 C 1.53002 * 109.46946 * 154.99991 * 15 14 13 19 19 C 1.53001 * 109.47396 * 54.66166 * 18 15 14 20 20 C 1.52999 * 109.47198 * 174.66225 * 18 15 14 21 21 C 1.50698 * 109.46846 * 294.66293 * 18 15 14 22 22 C 1.38235 * 120.00206 * 354.27713 * 21 18 15 23 23 C 1.38241 * 119.99888 * 179.76296 * 22 21 18 24 24 C 1.38228 * 119.99923 * 0.51729 * 23 22 21 25 25 C 1.38234 * 120.00410 * 359.73691 * 24 23 22 26 26 C 1.38239 * 119.99859 * 0.02562 * 25 24 23 27 27 H 1.08997 * 109.47280 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47411 * 299.99723 * 1 2 3 29 29 H 1.08995 * 109.47861 * 59.99870 * 1 2 3 30 30 H 1.08997 * 109.47215 * 304.99774 * 4 2 1 31 31 H 1.08994 * 109.46880 * 184.99417 * 4 2 1 32 32 H 0.97000 * 120.00361 * 0.27151 * 8 7 5 33 33 H 1.09004 * 109.47274 * 54.99913 * 13 2 1 34 34 H 1.08996 * 109.46963 * 174.99874 * 13 2 1 35 35 H 1.00891 * 111.00296 * 56.04643 * 14 13 2 36 36 H 1.08997 * 109.46946 * 54.88575 * 17 15 14 37 37 H 1.08993 * 109.47124 * 174.89170 * 17 15 14 38 38 H 1.09002 * 109.46810 * 294.89407 * 17 15 14 39 39 H 1.09000 * 109.47168 * 59.99826 * 19 18 15 40 40 H 1.08998 * 109.47204 * 179.97438 * 19 18 15 41 41 H 1.09003 * 109.47193 * 300.00292 * 19 18 15 42 42 H 1.09007 * 109.47107 * 59.99525 * 20 18 15 43 43 H 1.09002 * 109.47369 * 179.97438 * 20 18 15 44 44 H 1.09003 * 109.47369 * 299.99903 * 20 18 15 45 45 H 1.08000 * 119.99940 * 0.02562 * 22 21 18 46 46 H 1.08004 * 119.99413 * 180.23042 * 23 22 21 47 47 H 1.08000 * 120.00077 * 179.72106 * 24 23 22 48 48 H 1.07994 * 120.00577 * 179.97438 * 25 24 23 49 49 H 1.07991 * 120.00126 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9931 -0.4016 -3.7284 8 7 2.6813 -1.5155 -3.8509 9 14 1.4983 0.5628 -5.2497 10 1 1.9995 -0.1333 -6.4618 11 1 0.0180 0.6626 -5.3127 12 1 2.0839 1.9259 -5.1838 13 6 2.0400 -0.7212 1.2492 14 7 1.6513 0.0374 2.4456 15 6 2.1258 -0.6266 3.6671 16 1 3.0895 -1.0977 3.4737 17 6 1.1140 -1.6920 4.0943 18 6 2.2787 0.4083 4.7836 19 6 0.9598 1.1623 4.9643 20 6 2.6440 -0.3005 6.0894 21 6 3.3687 1.3830 4.4191 22 6 4.1275 1.1779 3.2819 23 6 5.1241 2.0747 2.9450 24 6 5.3691 3.1707 3.7510 25 6 4.6139 3.3729 4.8910 26 6 3.6140 2.4788 5.2254 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6053 -1.7198 -1.2952 31 1 3.1262 -0.7994 -1.2057 32 1 2.9380 -2.0165 -3.0610 33 1 1.6054 -1.7198 1.2951 34 1 3.1263 -0.7994 1.2055 35 1 0.6529 0.1792 2.4753 36 1 0.9368 -2.3776 3.2658 37 1 1.5076 -2.2458 4.9465 38 1 0.1769 -1.2112 4.3748 39 1 0.1713 0.4574 5.2278 40 1 1.0686 1.8993 5.7600 41 1 0.6995 1.6673 4.0340 42 1 3.5837 -0.8378 5.9607 43 1 2.7534 0.4368 6.8847 44 1 1.8556 -1.0055 6.3530 45 1 3.9388 0.3194 2.6544 46 1 5.7144 1.9165 2.0545 47 1 6.1507 3.8689 3.4902 48 1 4.8055 4.2289 5.5210 49 1 3.0243 2.6366 6.1162 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602534342.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:33 Heat of formation + Delta-G solvation = -4.035739 kcal Electronic energy + Delta-G solvation = -23883.565309 eV Core-core repulsion = 20809.212013 eV Total energy + Delta-G solvation = -3074.353296 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.15662 -37.75232 -36.00221 -33.56011 -31.92580 -30.71766 -30.11653 -28.43937 -27.34233 -26.49287 -25.37796 -24.05482 -22.42386 -22.34058 -21.32739 -19.39734 -18.56850 -17.15412 -16.68870 -15.46724 -15.16191 -15.00309 -14.92162 -14.18292 -13.97761 -13.72007 -13.61572 -13.50665 -13.23550 -13.10501 -12.72504 -12.33956 -12.28324 -12.18181 -11.99542 -11.68925 -11.63330 -11.42982 -11.31816 -11.20212 -11.09228 -10.89877 -10.70431 -10.47659 -10.34734 -10.11171 -10.02758 -9.81650 -9.40905 -8.72405 -8.52601 -8.44918 -8.27546 -8.07292 -6.30116 -3.97992 1.53884 1.61002 3.46652 3.48661 3.67069 3.96734 4.31097 4.55276 4.59350 4.70820 5.08102 5.11293 5.15032 5.21889 5.24487 5.26922 5.32491 5.46160 5.53305 5.57027 5.60757 5.68450 5.70194 5.74785 5.78259 5.82414 5.88672 5.94675 5.96831 6.02973 6.13315 6.18364 6.24550 6.28724 6.34748 6.40110 6.48241 6.62953 6.73821 6.85642 6.87857 7.04118 7.06366 7.19321 7.34515 7.45237 7.60364 7.68277 8.29591 8.52925 8.95101 9.73263 11.10287 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017619 B = 0.003902 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.850722 B = 7174.666598 C = 8101.270713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.076 4.076 3 H 0.066 0.934 4 C 0.016 3.984 5 C -0.593 4.593 6 H 0.049 0.951 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 1.066 2.934 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.063 3.937 14 N -0.679 5.679 15 C 0.089 3.911 16 H 0.077 0.923 17 C -0.186 4.186 18 C -0.012 4.012 19 C -0.139 4.139 20 C -0.141 4.141 21 C -0.055 4.055 22 C -0.091 4.091 23 C -0.122 4.122 24 C -0.129 4.129 25 C -0.129 4.129 26 C -0.123 4.123 27 H 0.039 0.961 28 H 0.033 0.967 29 H 0.062 0.938 30 H 0.004 0.996 31 H 0.005 0.995 32 H 0.267 0.733 33 H 0.023 0.977 34 H 0.063 0.937 35 H 0.339 0.661 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.131 0.869 46 H 0.118 0.882 47 H 0.114 0.886 48 H 0.114 0.886 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.108 4.464 21.519 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.095 4.095 3 H 0.085 0.915 4 C -0.022 4.022 5 C -0.631 4.631 6 H 0.067 0.933 7 C -0.190 4.190 8 N -0.553 5.553 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.066 4.066 14 N -0.310 5.310 15 C -0.022 4.022 16 H 0.096 0.904 17 C -0.245 4.245 18 C -0.012 4.012 19 C -0.196 4.196 20 C -0.199 4.199 21 C -0.055 4.055 22 C -0.109 4.109 23 C -0.140 4.140 24 C -0.147 4.147 25 C -0.147 4.147 26 C -0.141 4.141 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.022 0.978 31 H 0.023 0.977 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.159 0.841 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.149 0.851 46 H 0.136 0.864 47 H 0.132 0.868 48 H 0.132 0.868 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.734 4.903 19.814 20.425 hybrid contribution -0.694 -0.717 1.658 1.935 sum 0.040 4.186 21.472 21.877 Atomic orbital electron populations 1.21715 0.96555 1.00297 1.00371 1.21058 0.94919 0.99992 0.93491 0.91529 1.19226 0.95266 0.95344 0.92350 1.22032 1.38609 1.10201 0.92276 0.93268 1.25802 0.94729 0.97155 1.01345 1.70778 1.35949 1.15097 1.33462 0.83582 0.76007 0.75214 0.75714 1.20874 1.21545 1.21490 1.22166 0.99861 0.94633 0.89905 1.60732 1.19775 1.49636 1.00839 1.21577 0.98280 0.92130 0.90166 0.90447 1.22609 1.00223 0.99819 1.01819 1.19468 0.93758 0.93675 0.94342 1.21897 0.95656 0.99778 1.02289 1.21963 1.01484 1.00292 0.96124 1.19615 0.95784 0.95302 0.94828 1.21309 0.93884 0.99803 0.95879 1.21216 0.98346 0.95030 0.99410 1.21072 1.00054 0.98071 0.95518 1.20997 0.96799 0.99310 0.97556 1.20895 0.98389 0.95062 0.99715 0.94220 0.94839 0.91858 0.97806 0.97698 0.92218 0.95904 0.91816 0.84084 0.92582 0.92056 0.92178 0.92712 0.92956 0.91339 0.92651 0.92541 0.92109 0.85139 0.86409 0.86777 0.86827 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.77 37.16 0.33 -2.15 16 2 C -0.08 -1.54 2.54 -90.62 -0.23 -1.77 16 3 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 4 C 0.02 0.40 3.76 -27.88 -0.10 0.29 16 5 C -0.59 -16.83 8.41 -34.44 -0.29 -17.12 16 6 H 0.05 1.38 7.06 -52.49 -0.37 1.01 16 7 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 8 N -0.92 -28.34 13.65 55.43 0.76 -27.59 16 9 Si 1.07 25.64 29.90 -169.99 -5.08 20.55 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.06 1.05 4.64 -3.83 -0.02 1.03 16 14 N -0.68 -9.32 4.29 -106.72 -0.46 -9.78 16 15 C 0.09 1.03 1.21 -67.71 -0.08 0.95 16 16 H 0.08 0.97 6.54 -51.93 -0.34 0.63 16 17 C -0.19 -1.92 8.38 37.16 0.31 -1.61 16 18 C -0.01 -0.12 0.46 -155.66 -0.07 -0.20 16 19 C -0.14 -1.39 7.61 37.16 0.28 -1.11 16 20 C -0.14 -1.27 7.84 37.16 0.29 -0.98 16 21 C -0.06 -0.68 4.64 -104.62 -0.49 -1.17 16 22 C -0.09 -1.26 8.51 -39.58 -0.34 -1.60 16 23 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 24 C -0.13 -1.57 10.05 -39.59 -0.40 -1.96 16 25 C -0.13 -1.47 10.05 -39.58 -0.40 -1.86 16 26 C -0.12 -1.41 8.76 -39.58 -0.35 -1.76 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.03 0.53 6.68 -51.92 -0.35 0.18 16 29 H 0.06 1.31 6.95 -51.93 -0.36 0.95 16 30 H 0.00 0.10 8.01 -51.93 -0.42 -0.32 16 31 H 0.00 0.13 8.00 -51.93 -0.42 -0.29 16 32 H 0.27 8.24 7.22 -40.82 -0.29 7.95 16 33 H 0.02 0.38 7.36 -51.93 -0.38 0.00 16 34 H 0.06 1.09 6.94 -51.93 -0.36 0.73 16 35 H 0.34 4.57 5.95 -39.30 -0.23 4.33 16 36 H 0.06 0.64 7.35 -51.93 -0.38 0.26 16 37 H 0.06 0.56 6.65 -51.93 -0.35 0.21 16 38 H 0.06 0.58 6.35 -51.93 -0.33 0.25 16 39 H 0.05 0.49 6.47 -51.93 -0.34 0.16 16 40 H 0.05 0.48 7.11 -51.93 -0.37 0.11 16 41 H 0.07 0.79 7.12 -51.93 -0.37 0.42 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.47 7.73 -51.93 -0.40 0.07 16 44 H 0.06 0.49 6.46 -51.93 -0.34 0.15 16 45 H 0.13 1.91 3.99 -52.49 -0.21 1.70 16 46 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 47 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 48 H 0.11 1.04 8.06 -52.49 -0.42 0.62 16 49 H 0.11 1.10 7.10 -52.49 -0.37 0.73 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -30.23 365.95 -9.62 -39.85 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -8.30 Total: 4.21 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: -2.04 Total: -32.77 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.30 Total: -37.36 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.08 Total: 20.55 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.23 -9.62 -39.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602534342.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.817 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds