Wall clock time and date at job start Tue Mar 31 2020 06:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46727 * 2 1 4 4 C 1.53002 * 109.46841 * 240.00034 * 2 1 3 5 5 C 1.50703 * 109.46887 * 65.00196 * 4 2 1 6 6 H 1.07997 * 120.00321 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99831 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99768 * 359.72395 * 7 5 4 9 9 Si 1.86797 * 119.99829 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47122 * 179.72555 * 9 7 5 11 11 H 1.48501 * 109.47091 * 299.72213 * 9 7 5 12 12 H 1.48500 * 109.47209 * 59.72397 * 9 7 5 13 13 C 1.52995 * 109.47192 * 119.99990 * 2 1 3 14 14 N 1.46902 * 109.47288 * 295.00291 * 13 2 1 15 15 C 1.46902 * 110.99700 * 180.02562 * 14 13 2 16 16 H 1.08997 * 109.47625 * 34.99258 * 15 14 13 17 17 C 1.53005 * 109.46935 * 274.99502 * 15 14 13 18 18 C 1.53002 * 109.46946 * 154.99991 * 15 14 13 19 19 C 1.53001 * 109.47396 * 54.66166 * 18 15 14 20 20 C 1.52999 * 109.47198 * 174.66225 * 18 15 14 21 21 C 1.50698 * 109.46846 * 294.66293 * 18 15 14 22 22 C 1.38235 * 120.00206 * 354.27713 * 21 18 15 23 23 C 1.38241 * 119.99888 * 179.76296 * 22 21 18 24 24 C 1.38228 * 119.99923 * 0.51729 * 23 22 21 25 25 C 1.38234 * 120.00410 * 359.73691 * 24 23 22 26 26 C 1.38239 * 119.99859 * 0.02562 * 25 24 23 27 27 H 1.08997 * 109.47280 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47411 * 299.99723 * 1 2 3 29 29 H 1.08995 * 109.47861 * 59.99870 * 1 2 3 30 30 H 1.08997 * 109.47215 * 304.99774 * 4 2 1 31 31 H 1.08994 * 109.46880 * 184.99417 * 4 2 1 32 32 H 0.97000 * 120.00361 * 0.27151 * 8 7 5 33 33 H 1.09004 * 109.47274 * 54.99913 * 13 2 1 34 34 H 1.08996 * 109.46963 * 174.99874 * 13 2 1 35 35 H 1.00891 * 111.00296 * 56.04643 * 14 13 2 36 36 H 1.08997 * 109.46946 * 54.88575 * 17 15 14 37 37 H 1.08993 * 109.47124 * 174.89170 * 17 15 14 38 38 H 1.09002 * 109.46810 * 294.89407 * 17 15 14 39 39 H 1.09000 * 109.47168 * 59.99826 * 19 18 15 40 40 H 1.08998 * 109.47204 * 179.97438 * 19 18 15 41 41 H 1.09003 * 109.47193 * 300.00292 * 19 18 15 42 42 H 1.09007 * 109.47107 * 59.99525 * 20 18 15 43 43 H 1.09002 * 109.47369 * 179.97438 * 20 18 15 44 44 H 1.09003 * 109.47369 * 299.99903 * 20 18 15 45 45 H 1.08000 * 119.99940 * 0.02562 * 22 21 18 46 46 H 1.08004 * 119.99413 * 180.23042 * 23 22 21 47 47 H 1.08000 * 120.00077 * 179.72106 * 24 23 22 48 48 H 1.07994 * 120.00577 * 179.97438 * 25 24 23 49 49 H 1.07991 * 120.00126 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9931 -0.4016 -3.7284 8 7 2.6813 -1.5155 -3.8509 9 14 1.4983 0.5628 -5.2497 10 1 1.9995 -0.1333 -6.4618 11 1 0.0180 0.6626 -5.3127 12 1 2.0839 1.9259 -5.1838 13 6 2.0400 -0.7212 1.2492 14 7 1.6513 0.0374 2.4456 15 6 2.1258 -0.6266 3.6671 16 1 3.0895 -1.0977 3.4737 17 6 1.1140 -1.6920 4.0943 18 6 2.2787 0.4083 4.7836 19 6 0.9598 1.1623 4.9643 20 6 2.6440 -0.3005 6.0894 21 6 3.3687 1.3830 4.4191 22 6 4.1275 1.1779 3.2819 23 6 5.1241 2.0747 2.9450 24 6 5.3691 3.1707 3.7510 25 6 4.6139 3.3729 4.8910 26 6 3.6140 2.4788 5.2254 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6053 -1.7198 -1.2952 31 1 3.1262 -0.7994 -1.2057 32 1 2.9380 -2.0165 -3.0610 33 1 1.6054 -1.7198 1.2951 34 1 3.1263 -0.7994 1.2055 35 1 0.6529 0.1792 2.4753 36 1 0.9368 -2.3776 3.2658 37 1 1.5076 -2.2458 4.9465 38 1 0.1769 -1.2112 4.3748 39 1 0.1713 0.4574 5.2278 40 1 1.0686 1.8993 5.7600 41 1 0.6995 1.6673 4.0340 42 1 3.5837 -0.8378 5.9607 43 1 2.7534 0.4368 6.8847 44 1 1.8556 -1.0055 6.3530 45 1 3.9388 0.3194 2.6544 46 1 5.7144 1.9165 2.0545 47 1 6.1507 3.8689 3.4902 48 1 4.8055 4.2289 5.5210 49 1 3.0243 2.6366 6.1162 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602534342.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:32 Heat of formation + Delta-G solvation = -18.843684 kcal Electronic energy + Delta-G solvation = -23884.207429 eV Core-core repulsion = 20809.212013 eV Total energy + Delta-G solvation = -3074.995416 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.09256 -38.86936 -37.45249 -35.24662 -33.54792 -31.65923 -31.16019 -29.45064 -28.41072 -28.11602 -26.75278 -25.32518 -24.14404 -23.31240 -22.31821 -21.01838 -19.54430 -18.90113 -18.07813 -16.55930 -16.39565 -16.04620 -15.88451 -15.63488 -15.45912 -15.12653 -14.87951 -14.74893 -14.33456 -14.09721 -14.06413 -13.53167 -13.37895 -13.30297 -13.16424 -13.05565 -12.95966 -12.75478 -12.54900 -12.45419 -12.25492 -12.11016 -11.96537 -11.89206 -11.69246 -11.60909 -11.37862 -11.31984 -11.08937 -10.55032 -10.52130 -9.69008 -9.46716 -9.19877 -8.65760 -6.34548 0.59569 0.65425 1.51358 1.59970 1.78910 2.57115 3.01967 3.18367 3.20682 3.68889 3.81355 4.07859 4.13771 4.21076 4.25935 4.27498 4.32599 4.36598 4.43098 4.45303 4.48447 4.63581 4.69447 4.73546 4.81322 4.82373 4.87703 4.92201 4.95362 5.01290 5.05687 5.08677 5.15808 5.19444 5.24909 5.28002 5.30731 5.33368 5.43916 5.49058 5.56316 5.65006 5.70881 5.77519 5.91423 6.03375 6.17436 6.22089 6.26686 6.54995 6.62168 7.46221 8.74836 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017619 B = 0.003902 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.850722 B = 7174.666598 C = 8101.270713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.066 4.066 3 H 0.051 0.949 4 C 0.019 3.981 5 C -0.604 4.604 6 H 0.051 0.949 7 C -0.042 4.042 8 N -0.942 5.942 9 Si 1.115 2.885 10 H -0.284 1.284 11 H -0.268 1.268 12 H -0.271 1.271 13 C 0.080 3.920 14 N -0.675 5.675 15 C 0.089 3.911 16 H 0.063 0.937 17 C -0.181 4.181 18 C -0.007 4.007 19 C -0.136 4.136 20 C -0.138 4.138 21 C -0.061 4.061 22 C -0.113 4.113 23 C -0.144 4.144 24 C -0.138 4.138 25 C -0.129 4.129 26 C -0.125 4.125 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.041 0.959 30 H -0.015 1.015 31 H -0.020 1.020 32 H 0.253 0.747 33 H 0.023 0.977 34 H 0.051 0.949 35 H 0.344 0.656 36 H 0.041 0.959 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.114 0.886 46 H 0.111 0.889 47 H 0.131 0.869 48 H 0.140 0.860 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.326 5.890 23.736 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.085 4.085 3 H 0.069 0.931 4 C -0.019 4.019 5 C -0.642 4.642 6 H 0.069 0.931 7 C -0.238 4.238 8 N -0.580 5.580 9 Si 0.936 3.064 10 H -0.210 1.210 11 H -0.193 1.193 12 H -0.196 1.196 13 C -0.049 4.049 14 N -0.307 5.307 15 C -0.020 4.020 16 H 0.081 0.919 17 C -0.239 4.239 18 C -0.008 4.008 19 C -0.194 4.194 20 C -0.195 4.195 21 C -0.061 4.061 22 C -0.131 4.131 23 C -0.163 4.163 24 C -0.156 4.156 25 C -0.147 4.147 26 C -0.143 4.143 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.004 0.996 31 H -0.002 1.002 32 H 0.063 0.937 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.164 0.836 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.132 0.868 46 H 0.129 0.871 47 H 0.148 0.852 48 H 0.158 0.842 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.706 6.330 22.068 22.969 hybrid contribution -0.199 -1.152 1.031 1.559 sum -0.905 5.178 23.099 23.689 Atomic orbital electron populations 1.21614 0.94860 1.00555 1.01040 1.20859 0.96220 0.98582 0.92861 0.93078 1.19158 0.93634 0.94721 0.94383 1.22428 1.38032 1.10307 0.93437 0.93111 1.27377 0.94044 0.97270 1.05151 1.70915 1.37874 1.16403 1.32769 0.82970 0.76991 0.74518 0.71925 1.20988 1.19311 1.19629 1.21796 0.98931 0.94345 0.89807 1.60647 1.20033 1.49454 1.00562 1.21608 0.97982 0.92928 0.89521 0.91895 1.22554 1.00302 0.99168 1.01890 1.19466 0.93714 0.93082 0.94501 1.21882 0.95385 1.00207 1.01884 1.21946 1.01647 1.00675 0.95249 1.19844 0.95883 0.96069 0.94301 1.21299 0.95121 0.99797 0.96914 1.21337 0.98868 0.96100 0.99961 1.21313 1.00730 0.97813 0.95708 1.21363 0.96127 0.99950 0.97278 1.21194 0.98465 0.94425 1.00169 0.94117 0.91317 0.93963 0.99643 1.00177 0.93735 0.95928 0.93069 0.83568 0.93944 0.90441 0.90889 0.91253 0.91694 0.93029 0.93327 0.91374 0.90677 0.86837 0.87095 0.85153 0.84169 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.57 8.77 71.98 0.63 -3.94 16 2 C -0.07 -2.76 2.54 -10.79 -0.03 -2.78 16 3 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 4 C 0.02 0.99 3.76 29.85 0.11 1.10 16 5 C -0.60 -35.09 8.41 25.60 0.22 -34.87 16 6 H 0.05 2.88 7.06 -2.91 -0.02 2.86 16 7 C -0.04 -2.47 5.46 84.66 0.46 -2.01 16 8 N -0.94 -59.92 13.65 21.45 0.29 -59.63 16 9 Si 1.11 51.53 29.90 68.60 2.05 53.58 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 12 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 13 C 0.08 2.75 4.64 86.30 0.40 3.15 16 14 N -0.68 -18.24 4.29 -491.56 -2.11 -20.35 16 15 C 0.09 1.99 1.21 44.92 0.05 2.05 16 16 H 0.06 1.60 6.54 -2.39 -0.02 1.59 16 17 C -0.18 -3.35 8.38 71.98 0.60 -2.75 16 18 C -0.01 -0.13 0.46 -52.93 -0.02 -0.16 16 19 C -0.14 -2.33 7.61 71.98 0.55 -1.78 16 20 C -0.14 -2.09 7.84 71.98 0.56 -1.53 16 21 C -0.06 -1.43 4.64 -19.86 -0.09 -1.53 16 22 C -0.11 -3.22 8.51 22.27 0.19 -3.03 16 23 C -0.14 -4.02 10.05 22.27 0.22 -3.80 16 24 C -0.14 -3.24 10.05 22.27 0.22 -3.01 16 25 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 26 C -0.12 -2.57 8.76 22.27 0.20 -2.37 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.07 2.05 6.68 -2.38 -0.02 2.03 16 29 H 0.04 1.72 6.95 -2.39 -0.02 1.71 16 30 H -0.01 -0.83 8.01 -2.39 -0.02 -0.85 16 31 H -0.02 -1.15 8.00 -2.39 -0.02 -1.17 16 32 H 0.25 16.36 7.22 -92.71 -0.67 15.69 16 33 H 0.02 0.77 7.36 -2.39 -0.02 0.75 16 34 H 0.05 1.87 6.94 -2.39 -0.02 1.85 16 35 H 0.34 8.70 5.95 -89.70 -0.53 8.16 16 36 H 0.04 0.91 7.35 -2.39 -0.02 0.89 16 37 H 0.08 1.20 6.65 -2.39 -0.02 1.18 16 38 H 0.07 1.18 6.35 -2.39 -0.02 1.16 16 39 H 0.07 0.98 6.47 -2.39 -0.02 0.97 16 40 H 0.06 0.95 7.11 -2.39 -0.02 0.93 16 41 H 0.05 1.07 7.12 -2.39 -0.02 1.05 16 42 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.07 0.90 7.73 -2.39 -0.02 0.88 16 44 H 0.07 0.94 6.46 -2.39 -0.02 0.92 16 45 H 0.11 3.53 3.99 -2.91 -0.01 3.52 16 46 H 0.11 3.07 8.06 -2.91 -0.02 3.04 16 47 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 48 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 49 H 0.14 2.14 7.10 -2.92 -0.02 2.12 16 Total: -1.00 -67.11 365.95 5.22 -61.88 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.48 Total: 24.22 kcal Atomic # 6 Polarization: -64.20 SS G_CDS: 4.50 Total: -59.70 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -1.81 Total: -79.98 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 2.05 Total: 53.58 kcal Total: -67.11 5.22 -61.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602534342.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.040 kcal (2) G-P(sol) polarization free energy of solvation -67.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds