Wall clock time and date at job start Tue Mar 31 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47312 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47105 * 120.00272 * 9 7 5 12 12 H 1.48501 * 109.47040 * 239.99861 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47229 * 299.99644 * 15 14 13 17 17 C 1.52998 * 109.46997 * 60.00218 * 15 14 13 18 18 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 19 19 C 1.52994 * 109.47074 * 179.97438 * 18 15 14 20 20 C 1.50701 * 109.46854 * 179.97438 * 19 18 15 21 21 C 1.38235 * 120.00181 * 269.72903 * 20 19 18 22 22 C 1.38231 * 120.00012 * 179.77161 * 21 20 19 23 23 C 1.38239 * 120.00281 * 0.50152 * 22 21 20 24 24 C 1.38237 * 119.99716 * 359.74891 * 23 22 21 25 25 C 1.38232 * 119.99774 * 0.02562 * 24 23 22 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 30 30 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 31 31 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 33 33 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 34 34 H 1.00902 * 111.00150 * 56.04186 * 14 13 2 35 35 H 1.09004 * 109.46367 * 60.00175 * 16 15 14 36 36 H 1.08996 * 109.47150 * 179.97438 * 16 15 14 37 37 H 1.09001 * 109.47288 * 300.00316 * 16 15 14 38 38 H 1.09001 * 109.47705 * 60.00019 * 17 15 14 39 39 H 1.09004 * 109.46999 * 179.97438 * 17 15 14 40 40 H 1.09000 * 109.47142 * 299.99462 * 17 15 14 41 41 H 1.09001 * 109.46816 * 300.00451 * 18 15 14 42 42 H 1.09001 * 109.46992 * 59.99871 * 18 15 14 43 43 H 1.08991 * 109.47010 * 299.99707 * 19 18 15 44 44 H 1.09001 * 109.47270 * 60.00098 * 19 18 15 45 45 H 1.08004 * 119.99849 * 359.97438 * 21 20 19 46 46 H 1.07999 * 120.00296 * 180.23306 * 22 21 20 47 47 H 1.07995 * 120.00511 * 179.72859 * 23 22 21 48 48 H 1.07993 * 120.00230 * 179.97438 * 24 23 22 49 49 H 1.08007 * 120.00030 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 0.7433 1.7749 -4.8434 11 1 2.7182 0.9681 -5.9958 12 1 0.6461 -0.2856 -6.1189 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.5169 -2.0274 3.7555 17 6 3.6513 -0.7348 3.6292 18 6 1.7033 0.1915 4.8892 19 6 2.1967 -0.5003 6.1614 20 6 1.7812 0.3059 7.3650 21 6 2.6165 1.2900 7.8597 22 6 2.2333 2.0326 8.9608 23 6 1.0193 1.7842 9.5736 24 6 0.1863 0.7965 9.0821 25 6 0.5675 0.0570 7.9782 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1264 -0.7995 -1.2055 30 1 1.6055 -1.7198 -1.2951 31 1 2.9246 -1.8413 -4.7316 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 0.6528 0.1793 2.4752 35 1 1.8182 -2.6100 2.8849 36 1 1.8692 -2.5202 4.6616 37 1 0.4299 -1.9503 3.7826 38 1 4.0850 0.2632 3.5663 39 1 4.0033 -1.2271 4.5358 40 1 3.9527 -1.3175 2.7586 41 1 2.1373 1.1894 4.8260 42 1 0.6164 0.2691 4.9165 43 1 1.7623 -1.4979 6.2243 44 1 3.2836 -0.5783 6.1344 45 1 3.5671 1.4809 7.3838 46 1 2.8841 2.8041 9.3450 47 1 0.7218 2.3614 10.4365 48 1 -0.7619 0.6020 9.5611 49 1 -0.0831 -0.7149 7.5944 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602537465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:21 Heat of formation + Delta-G solvation = -9.532840 kcal Electronic energy + Delta-G solvation = -22638.810935 eV Core-core repulsion = 19564.219267 eV Total energy + Delta-G solvation = -3074.591668 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.69746 -38.52196 -35.62966 -33.51413 -32.20081 -31.10522 -30.17315 -28.21388 -27.30985 -26.75264 -25.79954 -24.09914 -22.78154 -22.31511 -21.09336 -18.96466 -18.74659 -17.06366 -16.41325 -15.83731 -15.58346 -15.13606 -14.81984 -14.36926 -14.34497 -14.22367 -13.63018 -13.36620 -13.15504 -13.12605 -12.96772 -12.57089 -12.39223 -12.15132 -12.00526 -11.61100 -11.38443 -11.36382 -11.27337 -11.26748 -11.09307 -10.86066 -10.78280 -10.54278 -10.47001 -10.27763 -10.06149 -9.66334 -9.14296 -9.12486 -8.93666 -8.83831 -8.31028 -8.02291 -5.95574 -3.96359 1.14262 1.17923 3.33390 3.40957 3.45211 3.55795 4.34595 4.50472 4.57195 4.61000 4.77385 4.87685 4.91039 5.01530 5.14551 5.24604 5.29865 5.40124 5.40359 5.41346 5.51893 5.65753 5.74046 5.77063 5.80576 5.84605 5.87004 5.96927 6.00709 6.04242 6.09624 6.13316 6.24615 6.25737 6.28946 6.37196 6.44152 6.49452 6.53315 6.63723 6.79575 7.02375 7.15056 7.22147 7.48629 7.72503 7.75965 7.89975 8.05246 8.49458 9.10345 9.66921 11.15981 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.035229 B = 0.002386 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.610096 B =11730.231412 C =11900.148616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.064 0.936 4 C 0.028 3.972 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.061 3.939 14 N -0.680 5.680 15 C 0.109 3.891 16 C -0.185 4.185 17 C -0.142 4.142 18 C -0.097 4.097 19 C -0.085 4.085 20 C -0.075 4.075 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.130 4.130 24 C -0.120 4.120 25 C -0.119 4.119 26 H 0.031 0.969 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.014 0.986 30 H 0.013 0.987 31 H 0.258 0.742 32 H 0.026 0.974 33 H 0.069 0.931 34 H 0.337 0.663 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.129 2.368 26.298 26.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.082 0.918 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.068 4.068 14 N -0.311 5.311 15 C 0.018 3.982 16 C -0.243 4.243 17 C -0.200 4.200 18 C -0.135 4.135 19 C -0.122 4.122 20 C -0.075 4.075 21 C -0.135 4.135 22 C -0.137 4.137 23 C -0.148 4.148 24 C -0.138 4.138 25 C -0.137 4.137 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.155 0.845 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.512 2.687 26.120 26.302 hybrid contribution -0.908 -0.339 -0.887 1.314 sum -2.420 2.348 25.233 25.457 Atomic orbital electron populations 1.21734 0.96814 1.00322 1.00193 1.21218 0.94760 1.00052 0.94274 0.91780 1.19109 0.96082 0.95335 0.90441 1.21284 1.34412 1.08203 0.90989 0.92542 1.25029 0.95392 0.95121 0.99111 1.69976 1.39193 1.21319 1.23213 0.86580 0.78241 0.80131 0.83316 1.19763 1.21105 1.21148 1.22206 1.00459 0.94725 0.89376 1.60736 1.19316 1.49992 1.01059 1.20890 0.95483 0.91420 0.90422 1.22627 1.00755 0.98684 1.02277 1.21940 0.94224 1.02360 1.01428 1.21531 1.00756 0.99420 0.91775 1.20786 1.01742 0.98198 0.91482 1.19989 0.94398 0.96590 0.96528 1.21098 0.99833 0.95954 0.96662 1.21152 0.96713 0.99556 0.96278 1.21127 0.94885 0.98472 1.00292 1.21140 0.99580 0.96259 0.96777 1.21079 0.96297 1.00136 0.96197 0.94994 0.91978 0.94127 0.96727 0.96829 0.93195 0.95551 0.91275 0.84454 0.91978 0.92288 0.92941 0.91937 0.92619 0.92237 0.90991 0.92174 0.90792 0.90531 0.86045 0.86228 0.86370 0.86280 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.77 37.16 0.33 -2.19 16 2 C -0.08 -1.73 2.55 -90.62 -0.23 -1.96 16 3 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.41 8.41 -34.44 -0.29 -14.69 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.06 1.05 4.36 -3.83 -0.02 1.03 16 14 N -0.68 -9.88 6.09 -99.96 -0.61 -10.48 16 15 C 0.11 1.29 0.74 -131.60 -0.10 1.20 16 16 C -0.18 -2.09 7.88 37.16 0.29 -1.80 16 17 C -0.14 -1.68 7.89 37.16 0.29 -1.39 16 18 C -0.10 -1.00 4.51 -26.73 -0.12 -1.13 16 19 C -0.08 -0.75 4.64 -27.89 -0.13 -0.88 16 20 C -0.08 -0.70 5.13 -104.62 -0.54 -1.24 16 21 C -0.12 -1.07 9.70 -39.58 -0.38 -1.45 16 22 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 23 C -0.13 -1.05 10.05 -39.58 -0.40 -1.45 16 24 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 25 C -0.12 -1.07 9.70 -39.58 -0.38 -1.45 16 26 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 27 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.03 0.46 6.30 -51.93 -0.33 0.13 16 33 H 0.07 1.25 6.30 -51.92 -0.33 0.92 16 34 H 0.34 4.74 6.98 -39.29 -0.27 4.47 16 35 H 0.06 0.80 6.40 -51.93 -0.33 0.46 16 36 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.54 6.43 -51.93 -0.33 0.21 16 40 H 0.06 0.78 6.40 -51.93 -0.33 0.45 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.62 6.37 -51.93 -0.33 0.29 16 44 H 0.08 0.65 6.37 -51.93 -0.33 0.32 16 45 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 46 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 47 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 48 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 49 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -30.09 376.96 -10.54 -40.63 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -8.63 Total: 1.87 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: -2.69 Total: -28.13 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.13 Total: -36.91 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.09 -10.54 -40.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602537465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.093 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds