Wall clock time and date at job start Tue Mar 31 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47312 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47105 * 120.00272 * 9 7 5 12 12 H 1.48501 * 109.47040 * 239.99861 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47229 * 299.99644 * 15 14 13 17 17 C 1.52998 * 109.46997 * 60.00218 * 15 14 13 18 18 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 19 19 C 1.52994 * 109.47074 * 179.97438 * 18 15 14 20 20 C 1.50701 * 109.46854 * 179.97438 * 19 18 15 21 21 C 1.38235 * 120.00181 * 269.72903 * 20 19 18 22 22 C 1.38231 * 120.00012 * 179.77161 * 21 20 19 23 23 C 1.38239 * 120.00281 * 0.50152 * 22 21 20 24 24 C 1.38237 * 119.99716 * 359.74891 * 23 22 21 25 25 C 1.38232 * 119.99774 * 0.02562 * 24 23 22 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 30 30 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 31 31 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 33 33 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 34 34 H 1.00902 * 111.00150 * 56.04186 * 14 13 2 35 35 H 1.09004 * 109.46367 * 60.00175 * 16 15 14 36 36 H 1.08996 * 109.47150 * 179.97438 * 16 15 14 37 37 H 1.09001 * 109.47288 * 300.00316 * 16 15 14 38 38 H 1.09001 * 109.47705 * 60.00019 * 17 15 14 39 39 H 1.09004 * 109.46999 * 179.97438 * 17 15 14 40 40 H 1.09000 * 109.47142 * 299.99462 * 17 15 14 41 41 H 1.09001 * 109.46816 * 300.00451 * 18 15 14 42 42 H 1.09001 * 109.46992 * 59.99871 * 18 15 14 43 43 H 1.08991 * 109.47010 * 299.99707 * 19 18 15 44 44 H 1.09001 * 109.47270 * 60.00098 * 19 18 15 45 45 H 1.08004 * 119.99849 * 359.97438 * 21 20 19 46 46 H 1.07999 * 120.00296 * 180.23306 * 22 21 20 47 47 H 1.07995 * 120.00511 * 179.72859 * 23 22 21 48 48 H 1.07993 * 120.00230 * 179.97438 * 24 23 22 49 49 H 1.08007 * 120.00030 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 0.7433 1.7749 -4.8434 11 1 2.7182 0.9681 -5.9958 12 1 0.6461 -0.2856 -6.1189 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.5169 -2.0274 3.7555 17 6 3.6513 -0.7348 3.6292 18 6 1.7033 0.1915 4.8892 19 6 2.1967 -0.5003 6.1614 20 6 1.7812 0.3059 7.3650 21 6 2.6165 1.2900 7.8597 22 6 2.2333 2.0326 8.9608 23 6 1.0193 1.7842 9.5736 24 6 0.1863 0.7965 9.0821 25 6 0.5675 0.0570 7.9782 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1264 -0.7995 -1.2055 30 1 1.6055 -1.7198 -1.2951 31 1 2.9246 -1.8413 -4.7316 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 0.6528 0.1793 2.4752 35 1 1.8182 -2.6100 2.8849 36 1 1.8692 -2.5202 4.6616 37 1 0.4299 -1.9503 3.7826 38 1 4.0850 0.2632 3.5663 39 1 4.0033 -1.2271 4.5358 40 1 3.9527 -1.3175 2.7586 41 1 2.1373 1.1894 4.8260 42 1 0.6164 0.2691 4.9165 43 1 1.7623 -1.4979 6.2243 44 1 3.2836 -0.5783 6.1344 45 1 3.5671 1.4809 7.3838 46 1 2.8841 2.8041 9.3450 47 1 0.7218 2.3614 10.4365 48 1 -0.7619 0.6020 9.5611 49 1 -0.0831 -0.7149 7.5944 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602537465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:20 Heat of formation + Delta-G solvation = -24.322448 kcal Electronic energy + Delta-G solvation = -22639.452260 eV Core-core repulsion = 19564.219267 eV Total energy + Delta-G solvation = -3075.232994 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.43287 -39.51935 -37.14885 -34.88389 -33.81296 -31.70893 -31.40614 -29.13861 -28.61080 -28.26144 -27.13612 -25.37778 -23.90610 -23.39265 -21.83020 -20.64636 -19.75065 -18.52405 -17.71022 -16.87581 -16.60751 -16.27002 -16.14614 -15.67232 -15.43984 -15.21997 -14.66862 -14.49067 -14.29798 -14.18264 -13.89360 -13.81195 -13.61061 -13.42930 -13.31116 -13.00315 -12.80135 -12.76271 -12.44076 -12.27762 -12.23014 -12.13038 -12.06214 -11.90067 -11.75155 -11.54423 -11.35984 -11.31311 -11.00666 -10.87808 -10.53870 -9.76528 -9.51739 -9.22900 -8.17398 -6.26315 0.51097 0.55634 1.39469 1.40012 1.53120 2.41936 2.91172 3.15851 3.27986 3.76727 3.94034 4.06791 4.11856 4.21952 4.24318 4.31690 4.32709 4.38067 4.43172 4.50200 4.58037 4.70701 4.71689 4.73496 4.75851 4.82652 4.85308 4.92910 5.00436 5.08292 5.10015 5.14290 5.22806 5.24286 5.25507 5.27756 5.40131 5.46581 5.48279 5.50168 5.59058 5.64110 5.68336 5.81454 5.82135 5.90482 6.18357 6.22213 6.34554 6.60567 6.89881 7.41796 8.94833 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.035229 B = 0.002386 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.610096 B =11730.231412 C =11900.148616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.076 4.076 3 H 0.053 0.947 4 C 0.033 3.967 5 C -0.526 4.526 6 H 0.060 0.940 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.077 3.923 14 N -0.681 5.681 15 C 0.109 3.891 16 C -0.181 4.181 17 C -0.142 4.142 18 C -0.086 4.086 19 C -0.077 4.077 20 C -0.088 4.088 21 C -0.132 4.132 22 C -0.129 4.129 23 C -0.137 4.137 24 C -0.128 4.128 25 C -0.131 4.131 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.039 0.961 29 H -0.015 1.015 30 H -0.011 1.011 31 H 0.262 0.738 32 H 0.025 0.975 33 H 0.057 0.943 34 H 0.341 0.659 35 H 0.043 0.957 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.040 0.960 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.127 0.873 46 H 0.135 0.865 47 H 0.137 0.863 48 H 0.136 0.864 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.194 3.256 27.775 28.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.095 4.095 3 H 0.072 0.928 4 C -0.004 4.004 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.205 1.205 13 C -0.052 4.052 14 N -0.313 5.313 15 C 0.018 3.982 16 C -0.239 4.239 17 C -0.199 4.199 18 C -0.124 4.124 19 C -0.114 4.114 20 C -0.088 4.088 21 C -0.150 4.150 22 C -0.147 4.147 23 C -0.155 4.155 24 C -0.146 4.146 25 C -0.149 4.149 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.003 0.997 30 H 0.007 0.993 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.161 0.839 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.145 0.855 46 H 0.153 0.847 47 H 0.155 0.845 48 H 0.154 0.846 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.584 3.584 27.617 27.968 hybrid contribution -0.553 -0.615 -1.272 1.518 sum -3.137 2.968 26.345 26.696 Atomic orbital electron populations 1.21635 0.95084 1.00543 1.00982 1.21022 0.96130 0.98872 0.93456 0.92820 1.18998 0.94101 0.94539 0.92773 1.21665 1.34265 1.08454 0.92073 0.92181 1.25968 0.95327 0.96152 1.02689 1.70108 1.40339 1.23001 1.24182 0.85449 0.78061 0.78879 0.78972 1.18616 1.20573 1.20471 1.21856 0.99556 0.94454 0.89337 1.60669 1.19713 1.49929 1.01018 1.20983 0.95446 0.92006 0.89743 1.22577 1.01028 0.97921 1.02415 1.21947 0.94276 1.01895 1.01775 1.21406 1.00706 0.98673 0.91608 1.20709 1.01952 0.98266 0.90498 1.20080 0.94830 0.97010 0.96892 1.21303 1.00273 0.96240 0.97176 1.21431 0.97224 0.99862 0.96150 1.21442 0.94737 0.98521 1.00803 1.21433 1.00390 0.96120 0.96688 1.21297 0.96420 1.00630 0.96575 0.91565 0.93749 0.94164 0.99672 0.99278 0.92969 0.95669 0.92459 0.83907 0.93813 0.90296 0.92456 0.92619 0.90303 0.94047 0.91993 0.92066 0.90039 0.90144 0.85474 0.84672 0.84503 0.84575 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 8.77 71.98 0.63 -4.00 16 2 C -0.08 -3.17 2.55 -10.79 -0.03 -3.19 16 3 H 0.05 2.34 8.14 -2.39 -0.02 2.33 16 4 C 0.03 1.79 4.45 29.85 0.13 1.93 16 5 C -0.53 -30.24 8.41 25.60 0.22 -30.02 16 6 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 7 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 8 N -0.94 -57.85 13.29 21.45 0.28 -57.57 16 9 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 10 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 C 0.08 2.69 4.36 86.30 0.38 3.06 16 14 N -0.68 -19.17 6.09 -470.18 -2.86 -22.03 16 15 C 0.11 2.45 0.74 3.53 0.00 2.45 16 16 C -0.18 -3.80 7.88 71.98 0.57 -3.24 16 17 C -0.14 -3.23 7.89 71.98 0.57 -2.67 16 18 C -0.09 -1.63 4.51 30.59 0.14 -1.50 16 19 C -0.08 -1.21 4.64 29.85 0.14 -1.07 16 20 C -0.09 -1.51 5.13 -19.86 -0.10 -1.61 16 21 C -0.13 -2.22 9.70 22.27 0.22 -2.00 16 22 C -0.13 -1.96 10.05 22.27 0.22 -1.73 16 23 C -0.14 -1.97 10.05 22.27 0.22 -1.75 16 24 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 25 C -0.13 -2.13 9.70 22.27 0.22 -1.91 16 26 H 0.07 1.98 6.68 -2.39 -0.02 1.97 16 27 H 0.04 1.78 6.95 -2.39 -0.02 1.77 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 29 H -0.02 -0.89 8.14 -2.39 -0.02 -0.90 16 30 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 31 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.03 0.89 6.30 -2.39 -0.02 0.87 16 33 H 0.06 2.13 6.30 -2.38 -0.02 2.12 16 34 H 0.34 9.01 6.98 -89.69 -0.63 8.38 16 35 H 0.04 1.09 6.40 -2.39 -0.02 1.07 16 36 H 0.08 1.34 6.43 -2.39 -0.02 1.33 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.41 6.43 -2.38 -0.02 1.40 16 40 H 0.04 1.09 6.40 -2.39 -0.02 1.07 16 41 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 1.16 6.37 -2.39 -0.02 1.15 16 44 H 0.08 1.20 6.37 -2.39 -0.02 1.18 16 45 H 0.13 1.87 8.06 -2.91 -0.02 1.85 16 46 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 47 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 48 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 49 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -65.38 376.96 3.93 -61.45 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.28 Total: 19.75 kcal Atomic # 6 Polarization: -52.92 SS G_CDS: 4.21 Total: -48.71 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -2.58 Total: -79.60 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -65.38 3.93 -61.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602537465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.126 kcal (2) G-P(sol) polarization free energy of solvation -65.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds