Wall clock time and date at job start Tue Mar 31 2020 06:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47059 * 179.97438 * 15 14 13 17 17 C 1.53009 * 109.47134 * 300.00237 * 16 15 14 18 18 C 1.53003 * 109.47236 * 59.99863 * 16 15 14 19 19 C 1.53000 * 109.47439 * 180.02562 * 16 15 14 20 20 C 1.50701 * 109.47118 * 179.97438 * 19 16 15 21 21 C 1.38237 * 119.99777 * 269.72500 * 20 19 16 22 22 C 1.38234 * 119.99291 * 179.76944 * 21 20 19 23 23 C 1.38231 * 120.00514 * 0.50611 * 22 21 20 24 24 C 1.38236 * 119.99747 * 359.74549 * 23 22 21 25 25 C 1.38236 * 119.99633 * 90.00225 * 20 19 16 26 26 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 27 27 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 29 29 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 30 30 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 31 31 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 32 32 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 33 33 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 34 34 H 1.00902 * 111.00152 * 56.04664 * 14 13 2 35 35 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 36 36 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 37 37 H 1.08997 * 109.47112 * 60.00049 * 17 16 15 38 38 H 1.09004 * 109.46937 * 179.97438 * 17 16 15 39 39 H 1.08995 * 109.46801 * 299.99695 * 17 16 15 40 40 H 1.09000 * 109.46418 * 59.99976 * 18 16 15 41 41 H 1.08994 * 109.46952 * 180.02562 * 18 16 15 42 42 H 1.08997 * 109.47415 * 300.00199 * 18 16 15 43 43 H 1.08993 * 109.46624 * 300.00000 * 19 16 15 44 44 H 1.08999 * 109.46678 * 60.00026 * 19 16 15 45 45 H 1.07995 * 120.00059 * 359.97438 * 21 20 19 46 46 H 1.08006 * 119.99511 * 180.23302 * 22 21 20 47 47 H 1.07996 * 120.00057 * 179.72725 * 23 22 21 48 48 H 1.08003 * 119.99688 * 179.97438 * 24 23 22 49 49 H 1.07988 * 120.00491 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 2.5663 1.5388 5.5860 11 1 0.2303 1.2889 4.9849 12 1 1.3056 -0.3715 6.3874 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7025 0.1904 -4.8892 17 6 0.1767 0.2983 -4.9270 18 6 2.3108 1.5916 -4.8014 19 6 2.1961 -0.5015 -6.1614 20 6 1.7785 0.3032 -7.3652 21 6 0.5670 0.0488 -7.9803 22 6 0.1819 0.7902 -9.0816 23 6 1.0129 1.7790 -9.5741 24 6 2.2267 2.0299 -8.9621 25 6 2.6096 1.2920 -7.8577 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 3.1263 -0.7995 1.2057 30 1 1.6053 -1.7197 1.2953 31 1 2.9286 -2.0221 3.0617 32 1 3.1263 -0.7997 -1.2054 33 1 1.6053 -1.7200 -1.2950 34 1 1.9883 0.9871 -2.3967 35 1 3.2127 -0.7042 -3.6399 36 1 1.6921 -1.6250 -3.7299 37 1 -0.1752 0.7911 -4.0207 38 1 -0.1248 0.8810 -5.7975 39 1 -0.2566 -0.6998 -4.9896 40 1 3.3978 1.5146 -4.7744 41 1 2.0088 2.1739 -5.6718 42 1 1.9589 2.0843 -3.8951 43 1 3.2829 -0.5787 -6.1347 44 1 1.7623 -1.4995 -6.2238 45 1 -0.0801 -0.7270 -7.5985 46 1 -0.7663 0.5939 -9.5600 47 1 0.7140 2.3552 -10.4372 48 1 2.8762 2.8022 -9.3472 49 1 3.5579 1.4880 -7.3796 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602551953.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:24 Heat of formation + Delta-G solvation = -16.620586 kcal Electronic energy + Delta-G solvation = -22773.737612 eV Core-core repulsion = 19698.838596 eV Total energy + Delta-G solvation = -3074.899016 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.02430 -38.00054 -36.12354 -33.66692 -32.05867 -31.19148 -30.78941 -27.33463 -27.08579 -26.54032 -25.99691 -23.98951 -22.70412 -22.32072 -21.38583 -19.54649 -18.65980 -16.87869 -16.67433 -15.75451 -15.49724 -15.42308 -15.13343 -14.49068 -14.06520 -13.74955 -13.72810 -13.62405 -13.49571 -13.15967 -12.97532 -12.61138 -12.33613 -11.94972 -11.82420 -11.75120 -11.59170 -11.49349 -11.33417 -11.15185 -11.00126 -10.85277 -10.76499 -10.61855 -10.58158 -10.12350 -10.04992 -9.78480 -9.41495 -9.12025 -8.85873 -8.43839 -8.27132 -8.10621 -6.30162 -3.97957 1.13355 1.16925 3.45982 3.49952 3.54364 3.65537 4.31822 4.55840 4.57796 4.62171 4.76852 4.80242 4.85173 4.93601 5.01362 5.20437 5.27966 5.38677 5.46199 5.47579 5.57173 5.62340 5.65879 5.71694 5.78073 5.79958 5.83017 5.85892 5.96421 6.00980 6.08506 6.13575 6.23282 6.27791 6.28545 6.34701 6.42709 6.48103 6.48541 6.62685 6.78212 6.92610 7.09775 7.15322 7.33682 7.44705 7.59938 7.67568 8.29966 8.53443 8.95317 9.73470 11.10301 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.042882 B = 0.002349 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.803948 B =11918.394559 C =11957.023739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.075 4.075 3 H 0.053 0.947 4 C 0.014 3.986 5 C -0.592 4.592 6 H 0.050 0.950 7 C 0.011 3.989 8 N -0.917 5.917 9 Si 1.070 2.930 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.684 5.684 15 C 0.068 3.932 16 C -0.054 4.054 17 C -0.133 4.133 18 C -0.148 4.148 19 C -0.075 4.075 20 C -0.068 4.068 21 C -0.114 4.114 22 C -0.121 4.121 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.116 4.116 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.054 0.946 29 H 0.002 0.998 30 H 0.007 0.993 31 H 0.268 0.732 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.337 0.663 35 H 0.024 0.976 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.094 4.860 -27.091 27.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.024 4.024 5 C -0.631 4.631 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.554 5.554 9 Si 0.899 3.101 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.315 5.315 15 C -0.061 4.061 16 C -0.054 4.054 17 C -0.191 4.191 18 C -0.205 4.205 19 C -0.112 4.112 20 C -0.068 4.068 21 C -0.132 4.132 22 C -0.139 4.139 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.134 4.134 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.021 0.979 30 H 0.025 0.975 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.155 0.845 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.641 4.580 -25.457 26.001 hybrid contribution 0.957 0.151 -1.676 1.936 sum -1.685 4.731 -27.133 27.594 Atomic orbital electron populations 1.21567 0.95513 1.00497 1.00258 1.21048 0.96127 0.98756 0.93443 0.92815 1.19254 0.95075 0.95631 0.92422 1.22060 1.38497 1.10244 0.92259 0.93189 1.25830 0.94803 0.97164 1.01400 1.70749 1.36421 1.14714 1.33488 0.83529 0.75963 0.75229 0.75398 1.21585 1.21499 1.21089 1.22143 0.96928 0.97735 0.89729 1.60553 1.63928 1.05748 1.01290 1.21964 0.96793 0.97811 0.89561 1.20477 0.96817 0.95272 0.92823 1.21813 0.93695 1.01486 1.02063 1.21980 1.00010 0.96217 1.02283 1.20710 1.01060 0.98056 0.91419 1.19835 0.94413 0.96453 0.96101 1.21087 0.96198 1.00059 0.95878 1.21139 0.99617 0.96324 0.96803 1.21111 0.94852 0.98467 1.00254 1.21131 0.96771 0.99738 0.96285 1.21072 0.99779 0.96058 0.96524 0.93779 0.94311 0.92732 0.97947 0.97512 0.92180 0.96068 0.91721 0.84454 0.95745 0.91294 0.91211 0.93183 0.93222 0.93151 0.92181 0.92060 0.91116 0.90884 0.86116 0.86299 0.86432 0.86335 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.07 -1.55 2.48 -90.62 -0.22 -1.78 16 3 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 4 C 0.01 0.35 3.76 -27.88 -0.10 0.25 16 5 C -0.59 -16.97 8.41 -34.44 -0.29 -17.26 16 6 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 7 C 0.01 0.33 5.46 -17.82 -0.10 0.23 16 8 N -0.92 -28.57 13.65 55.43 0.76 -27.81 16 9 Si 1.07 25.79 29.90 -169.99 -5.08 20.71 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.06 1.10 5.07 -3.82 -0.02 1.08 16 14 N -0.68 -9.73 5.17 -113.78 -0.59 -10.31 16 15 C 0.07 0.82 4.65 -3.82 -0.02 0.80 16 16 C -0.05 -0.53 0.62 -154.50 -0.10 -0.63 16 17 C -0.13 -1.42 7.73 37.16 0.29 -1.13 16 18 C -0.15 -1.46 7.55 37.16 0.28 -1.18 16 19 C -0.07 -0.66 4.46 -27.88 -0.12 -0.79 16 20 C -0.07 -0.61 4.00 -104.62 -0.42 -1.03 16 21 C -0.11 -1.00 7.90 -39.58 -0.31 -1.31 16 22 C -0.12 -0.99 10.05 -39.59 -0.40 -1.38 16 23 C -0.13 -1.02 10.05 -39.58 -0.40 -1.42 16 24 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 25 C -0.12 -1.01 7.89 -39.58 -0.31 -1.32 16 26 H 0.04 0.78 7.75 -51.93 -0.40 0.38 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 1.17 6.95 -51.93 -0.36 0.81 16 29 H 0.00 0.06 8.01 -51.93 -0.42 -0.35 16 30 H 0.01 0.18 8.00 -51.93 -0.42 -0.23 16 31 H 0.27 8.32 7.22 -40.82 -0.29 8.03 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.34 4.66 6.77 -39.29 -0.27 4.39 16 35 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.85 7.60 -51.93 -0.39 0.46 16 38 H 0.05 0.51 6.19 -51.93 -0.32 0.19 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.58 6.18 -51.93 -0.32 0.26 16 42 H 0.06 0.65 6.57 -51.93 -0.34 0.31 16 43 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 44 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 45 H 0.12 0.95 8.04 -52.49 -0.42 0.53 16 46 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 47 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 48 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 49 H 0.12 0.92 8.03 -52.49 -0.42 0.50 16 LS Contribution 378.90 15.07 5.71 5.71 Total: -1.00 -30.64 378.90 -10.55 -41.19 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -9.03 Total: 0.84 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: -2.31 Total: -30.33 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.17 Total: -38.12 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.64 -10.55 -41.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551953.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.570 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds