Wall clock time and date at job start Tue Mar 31 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47059 * 179.97438 * 15 14 13 17 17 C 1.53009 * 109.47134 * 300.00237 * 16 15 14 18 18 C 1.53003 * 109.47236 * 59.99863 * 16 15 14 19 19 C 1.53000 * 109.47439 * 180.02562 * 16 15 14 20 20 C 1.50701 * 109.47118 * 179.97438 * 19 16 15 21 21 C 1.38237 * 119.99777 * 269.72500 * 20 19 16 22 22 C 1.38234 * 119.99291 * 179.76944 * 21 20 19 23 23 C 1.38231 * 120.00514 * 0.50611 * 22 21 20 24 24 C 1.38236 * 119.99747 * 359.74549 * 23 22 21 25 25 C 1.38236 * 119.99633 * 90.00225 * 20 19 16 26 26 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 27 27 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 29 29 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 30 30 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 31 31 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 32 32 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 33 33 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 34 34 H 1.00902 * 111.00152 * 56.04664 * 14 13 2 35 35 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 36 36 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 37 37 H 1.08997 * 109.47112 * 60.00049 * 17 16 15 38 38 H 1.09004 * 109.46937 * 179.97438 * 17 16 15 39 39 H 1.08995 * 109.46801 * 299.99695 * 17 16 15 40 40 H 1.09000 * 109.46418 * 59.99976 * 18 16 15 41 41 H 1.08994 * 109.46952 * 180.02562 * 18 16 15 42 42 H 1.08997 * 109.47415 * 300.00199 * 18 16 15 43 43 H 1.08993 * 109.46624 * 300.00000 * 19 16 15 44 44 H 1.08999 * 109.46678 * 60.00026 * 19 16 15 45 45 H 1.07995 * 120.00059 * 359.97438 * 21 20 19 46 46 H 1.08006 * 119.99511 * 180.23302 * 22 21 20 47 47 H 1.07996 * 120.00057 * 179.72725 * 23 22 21 48 48 H 1.08003 * 119.99688 * 179.97438 * 24 23 22 49 49 H 1.07988 * 120.00491 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 2.5663 1.5388 5.5860 11 1 0.2303 1.2889 4.9849 12 1 1.3056 -0.3715 6.3874 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7025 0.1904 -4.8892 17 6 0.1767 0.2983 -4.9270 18 6 2.3108 1.5916 -4.8014 19 6 2.1961 -0.5015 -6.1614 20 6 1.7785 0.3032 -7.3652 21 6 0.5670 0.0488 -7.9803 22 6 0.1819 0.7902 -9.0816 23 6 1.0129 1.7790 -9.5741 24 6 2.2267 2.0299 -8.9621 25 6 2.6096 1.2920 -7.8577 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 3.1263 -0.7995 1.2057 30 1 1.6053 -1.7197 1.2953 31 1 2.9286 -2.0221 3.0617 32 1 3.1263 -0.7997 -1.2054 33 1 1.6053 -1.7200 -1.2950 34 1 1.9883 0.9871 -2.3967 35 1 3.2127 -0.7042 -3.6399 36 1 1.6921 -1.6250 -3.7299 37 1 -0.1752 0.7911 -4.0207 38 1 -0.1248 0.8810 -5.7975 39 1 -0.2566 -0.6998 -4.9896 40 1 3.3978 1.5146 -4.7744 41 1 2.0088 2.1739 -5.6718 42 1 1.9589 2.0843 -3.8951 43 1 3.2829 -0.5787 -6.1347 44 1 1.7623 -1.4995 -6.2238 45 1 -0.0801 -0.7270 -7.5985 46 1 -0.7663 0.5939 -9.5600 47 1 0.7140 2.3552 -10.4372 48 1 2.8762 2.8022 -9.3472 49 1 3.5579 1.4880 -7.3796 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602551953.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:23 Heat of formation + Delta-G solvation = -31.253596 kcal Electronic energy + Delta-G solvation = -22774.372147 eV Core-core repulsion = 19698.838596 eV Total energy + Delta-G solvation = -3075.533551 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.71485 -39.00406 -37.56798 -35.33111 -33.62111 -31.78914 -31.76697 -28.53624 -28.13471 -27.82826 -27.32710 -25.54752 -24.00183 -23.30580 -22.11053 -21.15636 -19.60005 -18.85384 -17.48127 -16.83913 -16.36749 -16.24490 -16.05491 -15.80374 -15.57146 -15.35714 -14.96571 -14.77274 -14.30978 -14.20849 -13.82664 -13.72455 -13.58800 -13.31088 -13.11243 -13.03023 -12.86650 -12.65330 -12.54681 -12.45202 -12.20633 -11.94941 -11.93431 -11.77564 -11.70396 -11.57759 -11.49101 -11.40333 -11.20046 -10.55014 -10.51971 -9.73134 -9.49180 -9.31306 -8.65744 -6.34567 0.51512 0.55972 1.51850 1.61353 1.78818 2.57374 2.91006 3.18333 3.24601 3.75966 3.86592 4.01633 4.09952 4.11468 4.19738 4.23169 4.24054 4.36774 4.41777 4.49561 4.57686 4.69099 4.71257 4.76221 4.80586 4.84796 4.88308 4.90272 4.93232 4.93888 5.07792 5.12164 5.14190 5.20625 5.24102 5.31683 5.33098 5.36807 5.45599 5.50040 5.57027 5.64356 5.65387 5.68839 5.81276 6.00529 6.12416 6.19428 6.22385 6.47940 6.62296 7.46295 8.74888 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.042882 B = 0.002349 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.803948 B =11918.394559 C =11957.023739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.067 4.067 3 H 0.051 0.949 4 C 0.016 3.984 5 C -0.603 4.603 6 H 0.052 0.948 7 C -0.045 4.045 8 N -0.942 5.942 9 Si 1.119 2.881 10 H -0.273 1.273 11 H -0.269 1.269 12 H -0.284 1.284 13 C 0.078 3.922 14 N -0.679 5.679 15 C 0.069 3.931 16 C -0.045 4.045 17 C -0.128 4.128 18 C -0.144 4.144 19 C -0.070 4.070 20 C -0.078 4.078 21 C -0.126 4.126 22 C -0.130 4.130 23 C -0.136 4.136 24 C -0.130 4.130 25 C -0.126 4.126 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.035 0.965 29 H -0.018 1.018 30 H -0.014 1.014 31 H 0.254 0.746 32 H 0.015 0.985 33 H 0.060 0.940 34 H 0.341 0.659 35 H 0.027 0.973 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.125 0.875 46 H 0.134 0.866 47 H 0.136 0.864 48 H 0.135 0.865 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.668 6.147 -28.433 29.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 H 0.070 0.930 4 C -0.022 4.022 5 C -0.641 4.641 6 H 0.070 0.930 7 C -0.241 4.241 8 N -0.580 5.580 9 Si 0.940 3.060 10 H -0.198 1.198 11 H -0.194 1.194 12 H -0.210 1.210 13 C -0.052 4.052 14 N -0.311 5.311 15 C -0.060 4.060 16 C -0.045 4.045 17 C -0.185 4.185 18 C -0.202 4.202 19 C -0.107 4.107 20 C -0.078 4.078 21 C -0.144 4.144 22 C -0.147 4.147 23 C -0.153 4.153 24 C -0.147 4.147 25 C -0.144 4.144 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.000 1.000 30 H 0.004 0.996 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.079 0.921 34 H 0.161 0.839 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.143 0.857 46 H 0.152 0.848 47 H 0.154 0.846 48 H 0.152 0.848 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.215 5.873 -26.836 27.659 hybrid contribution 1.137 -0.252 -1.351 1.784 sum -2.078 5.622 -28.187 28.817 Atomic orbital electron populations 1.21461 0.94545 1.00288 1.00519 1.20888 0.96784 0.98182 0.92757 0.93020 1.19197 0.93659 0.94905 0.94423 1.22452 1.37911 1.10358 0.93390 0.92980 1.27424 0.94139 0.97306 1.05267 1.70890 1.38342 1.16003 1.32800 0.82915 0.76937 0.74379 0.71758 1.19838 1.19353 1.20977 1.21829 0.96306 0.97376 0.89659 1.60492 1.63962 1.05792 1.00871 1.22019 0.96929 0.97927 0.89127 1.20378 0.96464 0.95187 0.92477 1.21749 0.93999 1.01360 1.01401 1.21946 1.00298 0.95948 1.01977 1.20644 1.01303 0.98049 0.90747 1.19874 0.94782 0.96839 0.96330 1.21246 0.96334 1.00472 0.96303 1.21404 1.00389 0.96243 0.96708 1.21410 0.94733 0.98461 1.00738 1.21403 0.97196 1.00020 0.96130 1.21238 1.00108 0.96163 0.96927 0.91208 0.94733 0.94621 1.00022 0.99588 0.93693 0.96667 0.92104 0.83944 0.95472 0.91414 0.92760 0.92764 0.93181 0.92640 0.91900 0.92847 0.90682 0.90595 0.85658 0.84778 0.84645 0.84758 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.33 8.89 71.98 0.64 -3.69 16 2 C -0.07 -2.78 2.48 -10.79 -0.03 -2.81 16 3 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.02 0.83 3.76 29.85 0.11 0.94 16 5 C -0.60 -34.88 8.41 25.60 0.22 -34.66 16 6 H 0.05 2.94 7.06 -2.91 -0.02 2.92 16 7 C -0.04 -2.65 5.46 84.65 0.46 -2.19 16 8 N -0.94 -59.80 13.65 21.45 0.29 -59.51 16 9 Si 1.12 51.38 29.90 68.60 2.05 53.43 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 C 0.08 2.66 5.07 86.31 0.44 3.10 16 14 N -0.68 -18.49 5.17 -513.89 -2.66 -21.14 16 15 C 0.07 1.56 4.65 86.30 0.40 1.96 16 16 C -0.04 -0.83 0.62 -52.18 -0.03 -0.86 16 17 C -0.13 -2.53 7.73 71.99 0.56 -1.98 16 18 C -0.14 -2.63 7.55 71.98 0.54 -2.08 16 19 C -0.07 -1.13 4.46 29.85 0.13 -0.99 16 20 C -0.08 -1.29 4.00 -19.86 -0.08 -1.37 16 21 C -0.13 -2.02 7.90 22.27 0.18 -1.84 16 22 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 23 C -0.14 -1.88 10.05 22.27 0.22 -1.66 16 24 C -0.13 -1.87 10.05 22.27 0.22 -1.64 16 25 C -0.13 -1.99 7.89 22.27 0.18 -1.82 16 26 H 0.07 2.35 7.75 -2.39 -0.02 2.34 16 27 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.03 1.50 6.95 -2.39 -0.02 1.48 16 29 H -0.02 -1.05 8.01 -2.39 -0.02 -1.07 16 30 H -0.01 -0.81 8.00 -2.39 -0.02 -0.82 16 31 H 0.25 16.33 7.22 -92.71 -0.67 15.66 16 32 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.34 8.95 6.77 -89.69 -0.61 8.35 16 35 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.05 1.24 7.60 -2.39 -0.02 1.23 16 38 H 0.05 1.03 6.19 -2.38 -0.01 1.01 16 39 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 1.12 6.18 -2.39 -0.01 1.10 16 42 H 0.05 1.05 6.57 -2.39 -0.02 1.04 16 43 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 44 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 45 H 0.13 1.80 8.04 -2.91 -0.02 1.78 16 46 H 0.13 1.45 8.06 -2.91 -0.02 1.42 16 47 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 48 H 0.13 1.41 8.06 -2.91 -0.02 1.39 16 49 H 0.13 1.74 8.03 -2.92 -0.02 1.71 16 Total: -1.00 -65.64 378.90 4.45 -61.19 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.38 Total: 19.29 kcal Atomic # 6 Polarization: -57.65 SS G_CDS: 4.39 Total: -53.26 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -2.36 Total: -80.65 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 2.05 Total: 53.43 kcal Total: -65.64 4.45 -61.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551953.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.940 kcal (2) G-P(sol) polarization free energy of solvation -65.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds