Wall clock time and date at job start Tue Mar 31 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46621 * 2 1 4 4 C 1.52997 * 109.46887 * 240.00519 * 2 1 3 5 5 C 1.50700 * 109.47286 * 64.99887 * 4 2 1 6 6 H 1.07998 * 120.00157 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99903 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99818 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00245 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46680 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47357 * 119.99572 * 9 7 5 12 12 H 1.48497 * 109.47424 * 240.00360 * 9 7 5 13 13 C 1.53000 * 109.47286 * 120.00247 * 2 1 3 14 14 N 1.46905 * 109.46844 * 295.00118 * 13 2 1 15 15 C 1.46902 * 110.99410 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.46626 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47127 * 299.99665 * 16 15 14 18 18 C 1.52992 * 109.47223 * 60.00170 * 16 15 14 19 19 C 1.52999 * 109.46623 * 179.97438 * 16 15 14 20 20 C 1.50706 * 109.46953 * 179.97438 * 19 16 15 21 21 C 1.38231 * 119.99890 * 269.72761 * 20 19 16 22 22 C 1.38243 * 119.99932 * 179.76127 * 21 20 19 23 23 C 1.38235 * 119.99614 * 0.51210 * 22 21 20 24 24 C 1.38238 * 120.00119 * 359.74635 * 23 22 21 25 25 C 1.38234 * 120.00044 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.46621 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46754 * 299.99862 * 1 2 3 28 28 H 1.09002 * 109.47124 * 59.99843 * 1 2 3 29 29 H 1.09004 * 109.46661 * 184.99931 * 4 2 1 30 30 H 1.09000 * 109.47470 * 304.99491 * 4 2 1 31 31 H 0.97007 * 119.99702 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47089 * 175.00104 * 13 2 1 33 33 H 1.09001 * 109.47170 * 54.99884 * 13 2 1 34 34 H 1.00898 * 110.99957 * 303.94954 * 14 13 2 35 35 H 1.08993 * 109.47737 * 60.00165 * 15 14 13 36 36 H 1.09000 * 109.47263 * 299.99727 * 15 14 13 37 37 H 1.09002 * 109.47153 * 180.02562 * 17 16 15 38 38 H 1.09001 * 109.46832 * 60.00321 * 17 16 15 39 39 H 1.09004 * 109.47261 * 300.00303 * 17 16 15 40 40 H 1.09001 * 109.47066 * 299.99881 * 18 16 15 41 41 H 1.08996 * 109.47747 * 59.99547 * 18 16 15 42 42 H 1.09002 * 109.47103 * 179.97438 * 18 16 15 43 43 H 1.09000 * 109.47486 * 299.99829 * 19 16 15 44 44 H 1.09001 * 109.47362 * 60.00551 * 19 16 15 45 45 H 1.08006 * 120.00368 * 0.02562 * 21 20 19 46 46 H 1.07997 * 120.00078 * 180.23244 * 22 21 20 47 47 H 1.08001 * 120.00016 * 179.71719 * 23 22 21 48 48 H 1.08003 * 119.99866 * 179.97438 * 24 23 22 49 49 H 1.07997 * 119.99975 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9932 -0.4014 -3.7283 8 7 2.6772 -1.5180 -3.8511 9 14 1.4984 0.5629 -5.2497 10 1 0.7411 1.7740 -4.8433 11 1 2.7162 0.9687 -5.9964 12 1 0.6450 -0.2867 -6.1186 13 6 2.0401 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1259 -0.6267 3.6671 16 6 1.7024 0.1907 4.8892 17 6 2.3106 1.5919 4.8013 18 6 0.1768 0.2984 4.9270 19 6 2.1961 -0.5012 6.1614 20 6 1.7795 0.3042 7.3652 21 6 2.6139 1.2887 7.8604 22 6 2.2296 2.0309 8.9616 23 6 1.0157 1.7812 9.5739 24 6 0.1837 0.7929 9.0818 25 6 0.5654 0.0548 7.9772 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.1264 -0.7993 -1.2056 30 1 1.6055 -1.7197 -1.2953 31 1 2.9251 -1.8405 -4.7318 32 1 3.1264 -0.7995 1.2055 33 1 1.6055 -1.7199 1.2951 34 1 1.9882 0.9872 2.3967 35 1 3.2128 -0.7038 3.6400 36 1 1.6923 -1.6247 3.7299 37 1 2.0093 2.1741 5.6722 38 1 1.9586 2.0845 3.8950 39 1 3.3977 1.5151 4.7744 40 1 -0.1753 0.7911 4.0207 41 1 -0.2566 -0.6997 4.9896 42 1 -0.1249 0.8804 5.7979 43 1 1.7624 -1.4993 6.2238 44 1 3.2830 -0.5782 6.1347 45 1 3.5641 1.4811 7.3845 46 1 2.8799 2.8026 9.3463 47 1 0.7175 2.3578 10.4370 48 1 -0.7646 0.5976 9.5605 49 1 -0.0844 -0.7175 7.5930 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602551954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:27 Heat of formation + Delta-G solvation = -12.756636 kcal Electronic energy + Delta-G solvation = -22737.466858 eV Core-core repulsion = 19662.735396 eV Total energy + Delta-G solvation = -3074.731462 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.99324 -37.94425 -35.99438 -33.46277 -31.99561 -31.16739 -30.78989 -27.29571 -27.09222 -26.87729 -25.91996 -24.05835 -22.67982 -22.25257 -21.34032 -19.34672 -18.54306 -16.84982 -16.33804 -15.66627 -15.46606 -15.35150 -15.07787 -14.60534 -14.22883 -13.96685 -13.67075 -13.56414 -13.32349 -13.03252 -12.82094 -12.47228 -12.20392 -12.04609 -11.84712 -11.72200 -11.48541 -11.45801 -11.31630 -11.12441 -10.86671 -10.82521 -10.77344 -10.62825 -10.52895 -10.26319 -10.11377 -9.66576 -9.11907 -9.09621 -8.92443 -8.81392 -8.31299 -8.02755 -5.95911 -3.96744 1.15801 1.19241 3.33140 3.40653 3.44894 3.56834 4.36627 4.50029 4.59310 4.65719 4.79388 4.83765 4.87825 4.98227 5.05045 5.23747 5.30534 5.39909 5.43228 5.50926 5.61684 5.69463 5.70848 5.76670 5.82519 5.85285 5.86190 5.94376 6.00490 6.06040 6.17539 6.19961 6.25856 6.30344 6.32187 6.43570 6.47191 6.52556 6.59570 6.72943 6.80646 7.05617 7.21955 7.23919 7.43498 7.70145 7.74218 7.88569 8.04803 8.49048 9.09993 9.66530 11.15661 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.043001 B = 0.002342 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.985414 B =11953.883522 C =11992.291501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.684 5.684 15 C 0.068 3.932 16 C -0.054 4.054 17 C -0.147 4.147 18 C -0.133 4.133 19 C -0.075 4.075 20 C -0.068 4.068 21 C -0.116 4.116 22 C -0.121 4.121 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.114 4.114 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.258 0.742 32 H 0.022 0.978 33 H 0.065 0.935 34 H 0.336 0.664 35 H 0.024 0.976 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 4.460 26.752 27.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.070 0.930 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.316 5.316 15 C -0.061 4.061 16 C -0.054 4.054 17 C -0.205 4.205 18 C -0.191 4.191 19 C -0.113 4.113 20 C -0.068 4.068 21 C -0.134 4.134 22 C -0.139 4.139 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.132 4.132 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.155 0.845 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.135 0.865 48 H 0.137 0.863 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.384 4.059 26.643 27.055 hybrid contribution 0.817 0.593 -0.965 1.396 sum -1.568 4.652 25.678 26.143 Atomic orbital electron populations 1.21580 0.95748 1.00506 1.00076 1.21187 0.95972 0.98832 0.94079 0.92963 1.19128 0.95876 0.95581 0.90508 1.21281 1.34360 1.08253 0.90984 0.92528 1.25034 0.95399 0.95125 0.99124 1.69984 1.39202 1.21314 1.23219 0.86574 0.78226 0.80133 0.83299 1.19758 1.21145 1.21093 1.22138 0.97023 0.97719 0.89583 1.60573 1.63922 1.05742 1.01352 1.21961 0.96796 0.97796 0.89580 1.20474 0.96789 0.95272 0.92853 1.21979 1.00012 0.96231 1.02251 1.21811 0.93728 1.01480 1.02037 1.20716 1.01070 0.98050 0.91427 1.19843 0.94345 0.96472 0.96104 1.21077 0.99765 0.96050 0.96543 1.21129 0.96760 0.99711 0.96338 1.21109 0.94883 0.98467 1.00258 1.21138 0.99619 0.96366 0.96780 1.21088 0.96206 1.00085 0.95838 0.94225 0.93941 0.92877 0.96985 0.96588 0.93191 0.95968 0.91679 0.84523 0.95753 0.91301 0.92254 0.92026 0.93161 0.91178 0.93233 0.93239 0.90877 0.91120 0.86232 0.86355 0.86460 0.86318 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 2 C -0.08 -1.68 2.48 -90.62 -0.22 -1.91 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.42 8.41 -34.44 -0.29 -14.71 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.06 1.11 5.07 -3.82 -0.02 1.09 16 14 N -0.68 -9.72 5.17 -113.77 -0.59 -10.31 16 15 C 0.07 0.82 4.65 -3.82 -0.02 0.80 16 16 C -0.05 -0.54 0.62 -154.51 -0.10 -0.63 16 17 C -0.15 -1.46 7.57 37.16 0.28 -1.18 16 18 C -0.13 -1.42 7.72 37.15 0.29 -1.13 16 19 C -0.07 -0.67 4.46 -27.88 -0.12 -0.79 16 20 C -0.07 -0.61 4.00 -104.62 -0.42 -1.03 16 21 C -0.12 -1.01 7.90 -39.58 -0.31 -1.33 16 22 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 23 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 24 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 25 C -0.11 -1.00 7.88 -39.58 -0.31 -1.32 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 28 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.34 4.63 6.77 -39.29 -0.27 4.37 16 35 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.58 6.19 -51.93 -0.32 0.26 16 38 H 0.06 0.65 6.57 -51.93 -0.34 0.31 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.85 7.60 -51.93 -0.39 0.46 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.51 6.17 -51.93 -0.32 0.19 16 43 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 44 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 45 H 0.12 0.93 8.04 -52.48 -0.42 0.51 16 46 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 47 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 48 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 49 H 0.12 0.96 8.02 -52.49 -0.42 0.53 16 LS Contribution 380.21 15.07 5.73 5.73 Total: -1.00 -29.89 380.21 -10.56 -40.45 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -9.09 Total: 0.14 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: -2.33 Total: -26.38 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.15 Total: -36.79 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.89 -10.56 -40.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.693 kcal (2) G-P(sol) polarization free energy of solvation -29.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds