Wall clock time and date at job start Tue Mar 31 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46621 * 2 1 4 4 C 1.52997 * 109.46887 * 240.00519 * 2 1 3 5 5 C 1.50700 * 109.47286 * 64.99887 * 4 2 1 6 6 H 1.07998 * 120.00157 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99903 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99818 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00245 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46680 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47357 * 119.99572 * 9 7 5 12 12 H 1.48497 * 109.47424 * 240.00360 * 9 7 5 13 13 C 1.53000 * 109.47286 * 120.00247 * 2 1 3 14 14 N 1.46905 * 109.46844 * 295.00118 * 13 2 1 15 15 C 1.46902 * 110.99410 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.46626 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47127 * 299.99665 * 16 15 14 18 18 C 1.52992 * 109.47223 * 60.00170 * 16 15 14 19 19 C 1.52999 * 109.46623 * 179.97438 * 16 15 14 20 20 C 1.50706 * 109.46953 * 179.97438 * 19 16 15 21 21 C 1.38231 * 119.99890 * 269.72761 * 20 19 16 22 22 C 1.38243 * 119.99932 * 179.76127 * 21 20 19 23 23 C 1.38235 * 119.99614 * 0.51210 * 22 21 20 24 24 C 1.38238 * 120.00119 * 359.74635 * 23 22 21 25 25 C 1.38234 * 120.00044 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.46621 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46754 * 299.99862 * 1 2 3 28 28 H 1.09002 * 109.47124 * 59.99843 * 1 2 3 29 29 H 1.09004 * 109.46661 * 184.99931 * 4 2 1 30 30 H 1.09000 * 109.47470 * 304.99491 * 4 2 1 31 31 H 0.97007 * 119.99702 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47089 * 175.00104 * 13 2 1 33 33 H 1.09001 * 109.47170 * 54.99884 * 13 2 1 34 34 H 1.00898 * 110.99957 * 303.94954 * 14 13 2 35 35 H 1.08993 * 109.47737 * 60.00165 * 15 14 13 36 36 H 1.09000 * 109.47263 * 299.99727 * 15 14 13 37 37 H 1.09002 * 109.47153 * 180.02562 * 17 16 15 38 38 H 1.09001 * 109.46832 * 60.00321 * 17 16 15 39 39 H 1.09004 * 109.47261 * 300.00303 * 17 16 15 40 40 H 1.09001 * 109.47066 * 299.99881 * 18 16 15 41 41 H 1.08996 * 109.47747 * 59.99547 * 18 16 15 42 42 H 1.09002 * 109.47103 * 179.97438 * 18 16 15 43 43 H 1.09000 * 109.47486 * 299.99829 * 19 16 15 44 44 H 1.09001 * 109.47362 * 60.00551 * 19 16 15 45 45 H 1.08006 * 120.00368 * 0.02562 * 21 20 19 46 46 H 1.07997 * 120.00078 * 180.23244 * 22 21 20 47 47 H 1.08001 * 120.00016 * 179.71719 * 23 22 21 48 48 H 1.08003 * 119.99866 * 179.97438 * 24 23 22 49 49 H 1.07997 * 119.99975 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9932 -0.4014 -3.7283 8 7 2.6772 -1.5180 -3.8511 9 14 1.4984 0.5629 -5.2497 10 1 0.7411 1.7740 -4.8433 11 1 2.7162 0.9687 -5.9964 12 1 0.6450 -0.2867 -6.1186 13 6 2.0401 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1259 -0.6267 3.6671 16 6 1.7024 0.1907 4.8892 17 6 2.3106 1.5919 4.8013 18 6 0.1768 0.2984 4.9270 19 6 2.1961 -0.5012 6.1614 20 6 1.7795 0.3042 7.3652 21 6 2.6139 1.2887 7.8604 22 6 2.2296 2.0309 8.9616 23 6 1.0157 1.7812 9.5739 24 6 0.1837 0.7929 9.0818 25 6 0.5654 0.0548 7.9772 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.1264 -0.7993 -1.2056 30 1 1.6055 -1.7197 -1.2953 31 1 2.9251 -1.8405 -4.7318 32 1 3.1264 -0.7995 1.2055 33 1 1.6055 -1.7199 1.2951 34 1 1.9882 0.9872 2.3967 35 1 3.2128 -0.7038 3.6400 36 1 1.6923 -1.6247 3.7299 37 1 2.0093 2.1741 5.6722 38 1 1.9586 2.0845 3.8950 39 1 3.3977 1.5151 4.7744 40 1 -0.1753 0.7911 4.0207 41 1 -0.2566 -0.6997 4.9896 42 1 -0.1249 0.8804 5.7979 43 1 1.7624 -1.4993 6.2238 44 1 3.2830 -0.5782 6.1347 45 1 3.5641 1.4811 7.3845 46 1 2.8799 2.8026 9.3463 47 1 0.7175 2.3578 10.4370 48 1 -0.7646 0.5976 9.5605 49 1 -0.0844 -0.7175 7.5930 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602551954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:27 Heat of formation + Delta-G solvation = -26.711954 kcal Electronic energy + Delta-G solvation = -22738.072006 eV Core-core repulsion = 19662.735396 eV Total energy + Delta-G solvation = -3075.336610 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.68517 -38.92984 -37.41101 -35.09054 -33.61712 -31.77087 -31.76020 -28.90761 -28.09758 -27.79675 -27.24548 -25.57399 -23.85958 -23.28514 -22.07936 -20.90053 -19.53578 -18.48742 -17.45872 -16.73719 -16.60030 -16.23177 -16.14328 -16.00556 -15.38425 -15.26445 -14.75448 -14.47900 -14.29942 -14.18122 -14.00910 -13.65050 -13.36768 -13.28954 -13.14326 -12.96525 -12.77188 -12.67776 -12.53140 -12.45139 -12.20468 -12.17170 -11.95446 -11.75068 -11.65159 -11.52719 -11.42335 -11.35560 -11.07229 -10.80903 -10.53848 -9.71177 -9.47001 -9.23763 -8.17443 -6.26360 0.53548 0.57872 1.39817 1.40244 1.53385 2.42078 2.93393 3.15906 3.32079 3.80253 3.90295 4.08809 4.14692 4.17012 4.23194 4.26061 4.35571 4.38969 4.53209 4.55432 4.61624 4.72632 4.77537 4.80591 4.90225 4.92659 4.96389 4.97162 4.97914 5.04733 5.15692 5.17111 5.23752 5.26692 5.29854 5.36525 5.46893 5.50217 5.52448 5.58131 5.61230 5.66397 5.70614 5.82466 5.83699 5.89701 6.12792 6.21357 6.32708 6.55587 6.89971 7.41827 8.94814 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.043001 B = 0.002342 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.985414 B =11953.883522 C =11992.291501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 H 0.052 0.948 4 C 0.032 3.968 5 C -0.526 4.526 6 H 0.061 0.939 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.078 3.922 14 N -0.680 5.680 15 C 0.069 3.931 16 C -0.045 4.045 17 C -0.144 4.144 18 C -0.128 4.128 19 C -0.070 4.070 20 C -0.078 4.078 21 C -0.126 4.126 22 C -0.130 4.130 23 C -0.136 4.136 24 C -0.130 4.130 25 C -0.126 4.126 26 H 0.034 0.966 27 H 0.067 0.933 28 H 0.036 0.964 29 H -0.015 1.015 30 H -0.011 1.011 31 H 0.261 0.739 32 H 0.015 0.985 33 H 0.060 0.940 34 H 0.341 0.659 35 H 0.027 0.973 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.126 0.874 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.134 0.866 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.430 5.738 27.943 28.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 H 0.071 0.929 4 C -0.006 4.006 5 C -0.564 4.564 6 H 0.079 0.921 7 C -0.202 4.202 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.052 4.052 14 N -0.311 5.311 15 C -0.060 4.060 16 C -0.045 4.045 17 C -0.201 4.201 18 C -0.185 4.185 19 C -0.108 4.108 20 C -0.078 4.078 21 C -0.144 4.144 22 C -0.148 4.148 23 C -0.154 4.154 24 C -0.148 4.148 25 C -0.143 4.143 26 H 0.053 0.947 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.003 0.997 30 H 0.008 0.992 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.078 0.922 34 H 0.160 0.840 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.144 0.856 46 H 0.152 0.848 47 H 0.153 0.847 48 H 0.152 0.848 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.988 5.348 27.855 28.520 hybrid contribution 1.014 0.183 -1.264 1.631 sum -1.974 5.531 26.591 27.232 Atomic orbital electron populations 1.21472 0.94693 1.00288 1.00434 1.21001 0.96692 0.98315 0.93190 0.92938 1.19023 0.94040 0.94690 0.92837 1.21668 1.34186 1.08521 0.92059 0.92111 1.25975 0.95340 0.96151 1.02715 1.70116 1.40376 1.23010 1.24186 0.85444 0.78057 0.78880 0.78954 1.18572 1.20537 1.20547 1.21828 0.96332 0.97353 0.89639 1.60506 1.63942 1.05791 1.00908 1.22013 0.96907 0.97907 0.89184 1.20374 0.96451 0.95190 0.92488 1.21945 1.00294 0.95950 1.01961 1.21747 0.94014 1.01352 1.01393 1.20651 1.01305 0.98041 0.90771 1.19880 0.94716 0.96858 0.96329 1.21243 1.00096 0.96155 0.96942 1.21401 0.97186 0.99992 0.96181 1.21408 0.94764 0.98464 1.00743 1.21403 1.00392 0.96282 0.96682 1.21246 0.96340 1.00497 0.96266 0.94718 0.91435 0.94498 0.99652 0.99245 0.92975 0.96682 0.92185 0.83978 0.95518 0.91463 0.91979 0.92775 0.92661 0.92696 0.93205 0.92817 0.90602 0.90698 0.85603 0.84776 0.84673 0.84794 0.85651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.31 8.89 71.98 0.64 -3.67 16 2 C -0.07 -3.01 2.48 -10.79 -0.03 -3.04 16 3 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.03 1.69 4.45 29.85 0.13 1.82 16 5 C -0.53 -30.08 8.41 25.60 0.22 -29.86 16 6 H 0.06 3.35 7.06 -2.91 -0.02 3.33 16 7 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 8 N -0.94 -57.78 13.29 21.45 0.28 -57.50 16 9 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 10 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 13 C 0.08 2.68 5.07 86.30 0.44 3.12 16 14 N -0.68 -18.56 5.17 -513.86 -2.66 -21.22 16 15 C 0.07 1.57 4.65 86.31 0.40 1.97 16 16 C -0.04 -0.83 0.62 -52.18 -0.03 -0.86 16 17 C -0.14 -2.64 7.57 71.98 0.54 -2.09 16 18 C -0.13 -2.55 7.72 71.98 0.56 -1.99 16 19 C -0.07 -1.14 4.46 29.85 0.13 -1.01 16 20 C -0.08 -1.30 4.00 -19.86 -0.08 -1.38 16 21 C -0.13 -2.01 7.90 22.27 0.18 -1.83 16 22 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 23 C -0.14 -1.91 10.05 22.27 0.22 -1.68 16 24 C -0.13 -1.91 10.05 22.27 0.22 -1.68 16 25 C -0.13 -2.03 7.88 22.27 0.18 -1.86 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 2.26 7.75 -2.39 -0.02 2.24 16 28 H 0.04 1.52 6.95 -2.39 -0.02 1.50 16 29 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 30 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 31 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 32 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.34 8.94 6.77 -89.70 -0.61 8.33 16 35 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 1.11 6.19 -2.39 -0.01 1.10 16 38 H 0.05 1.07 6.57 -2.39 -0.02 1.05 16 39 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.05 1.26 7.60 -2.39 -0.02 1.24 16 41 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.05 1.02 6.17 -2.39 -0.01 1.01 16 43 H 0.08 1.19 8.09 -2.39 -0.02 1.18 16 44 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 45 H 0.13 1.75 8.04 -2.91 -0.02 1.73 16 46 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16 47 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 48 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 49 H 0.13 1.82 8.02 -2.91 -0.02 1.80 16 Total: -1.00 -63.89 380.21 4.34 -59.56 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.27 Total: 17.73 kcal Atomic # 6 Polarization: -49.93 SS G_CDS: 4.41 Total: -45.52 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -2.37 Total: -78.72 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -63.89 4.34 -59.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.844 kcal (2) G-P(sol) polarization free energy of solvation -63.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds