Wall clock time and date at job start Tue Mar 31 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46967 * 2 1 4 4 N 1.46893 * 109.47507 * 119.99948 * 2 1 3 5 5 C 1.46896 * 110.99841 * 52.48302 * 4 2 1 6 6 C 1.53003 * 109.47451 * 78.67646 * 5 4 2 7 7 H 1.08997 * 109.46943 * 42.64111 * 6 5 4 8 8 C 1.53005 * 109.47034 * 282.64240 * 6 5 4 9 9 C 1.53000 * 109.47446 * 162.64335 * 6 5 4 10 10 C 1.50703 * 109.47173 * 185.00111 * 9 6 5 11 11 H 1.07993 * 119.99664 * 359.97438 * 10 9 6 12 12 C 1.37879 * 119.99740 * 179.97438 * 10 9 6 13 13 N 1.31508 * 120.00173 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99606 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47453 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47262 * 120.00254 * 14 12 10 17 17 H 1.48503 * 109.47272 * 240.00074 * 14 12 10 18 18 C 1.46900 * 111.00354 * 288.52880 * 4 2 1 19 19 H 1.09002 * 109.46594 * 35.41732 * 18 4 2 20 20 C 1.52997 * 109.47175 * 155.41598 * 18 4 2 21 21 C 1.50702 * 109.46830 * 275.41868 * 18 4 2 22 22 C 1.38229 * 120.00105 * 311.48962 * 21 18 4 23 23 C 1.38238 * 120.00190 * 179.81429 * 22 21 18 24 24 C 1.38240 * 119.99381 * 0.39349 * 23 22 21 25 25 C 1.38227 * 120.00532 * 359.85686 * 24 23 22 26 26 C 1.38238 * 119.99579 * 131.76660 * 21 18 4 27 27 H 1.09000 * 109.47143 * 284.13789 * 1 2 3 28 28 H 1.09000 * 109.47753 * 44.13416 * 1 2 3 29 29 H 1.08998 * 109.47227 * 164.14144 * 1 2 3 30 30 H 1.09003 * 109.46606 * 240.00663 * 2 1 3 31 31 H 1.08995 * 109.47213 * 176.10168 * 3 2 1 32 32 H 1.09001 * 109.47137 * 296.09956 * 3 2 1 33 33 H 1.08997 * 109.47159 * 56.10000 * 3 2 1 34 34 H 1.09000 * 109.47536 * 318.67541 * 5 4 2 35 35 H 1.09003 * 109.47472 * 198.67409 * 5 4 2 36 36 H 1.09005 * 109.46998 * 83.01965 * 8 6 5 37 37 H 1.09000 * 109.46958 * 323.01893 * 8 6 5 38 38 H 1.08999 * 109.46900 * 203.02006 * 8 6 5 39 39 H 1.09002 * 109.46689 * 304.99939 * 9 6 5 40 40 H 1.08996 * 109.47412 * 64.99939 * 9 6 5 41 41 H 0.96997 * 119.99773 * 179.97438 * 13 12 10 42 42 H 1.09002 * 109.47249 * 60.00536 * 20 18 4 43 43 H 1.09004 * 109.46666 * 179.97438 * 20 18 4 44 44 H 1.08994 * 109.47276 * 299.99849 * 20 18 4 45 45 H 1.08002 * 120.00060 * 359.97438 * 22 21 18 46 46 H 1.07991 * 120.00283 * 180.22797 * 23 22 21 47 47 H 1.08007 * 119.99069 * 179.83408 * 24 23 22 48 48 H 1.07997 * 120.00500 * 179.97438 * 25 24 23 49 49 H 1.07998 * 120.00518 * 359.96971 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.4078 -2.0218 1.3264 6 6 2.1066 -2.9978 0.3776 7 1 3.1837 -2.8360 0.4186 8 6 1.6097 -2.7646 -1.0506 9 6 1.7902 -4.4341 0.7995 10 6 2.5751 -5.3937 -0.0573 11 1 3.2333 -5.0169 -0.8261 12 6 2.4527 -6.7528 0.1403 13 7 1.6507 -7.2116 1.0762 14 14 3.4261 -7.9423 -0.9213 15 1 4.2483 -7.1787 -1.8941 16 1 4.3137 -8.7629 -0.0589 17 1 2.4897 -8.8309 -1.6553 18 6 1.7844 0.1128 2.4052 19 1 0.8431 0.6531 2.3033 20 6 1.7153 -0.8060 3.6266 21 6 2.9122 1.0970 2.5800 22 6 4.2234 0.6684 2.4918 23 6 5.2579 1.5719 2.6483 24 6 4.9811 2.9025 2.9010 25 6 3.6700 3.3301 2.9943 26 6 2.6354 2.4273 2.8341 27 1 -0.3633 0.2510 0.9965 28 1 -0.3634 0.7375 -0.7156 29 1 -0.3633 -0.9885 -0.2808 30 1 1.8932 -0.5138 -0.8901 31 1 3.1276 1.4434 0.0699 32 1 1.7348 1.9358 -0.9229 33 1 1.6206 1.9761 0.8529 34 1 0.3500 -1.9609 1.0706 35 1 1.5137 -2.3741 2.3525 36 1 2.1634 -1.9388 -1.4976 37 1 0.5475 -2.5211 -1.0305 38 1 1.7644 -3.6676 -1.6411 39 1 2.0633 -4.5740 1.8454 40 1 0.7241 -4.6232 0.6738 41 1 1.5644 -8.1677 1.2149 42 1 2.6566 -1.3462 3.7286 43 1 1.5412 -0.2083 4.5214 44 1 0.8996 -1.5178 3.5002 45 1 4.4396 -0.3719 2.2981 46 1 6.2823 1.2377 2.5758 47 1 5.7894 3.6078 3.0259 48 1 3.4537 4.3696 3.1922 49 1 1.6110 2.7615 2.9070 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602671397.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:59 Heat of formation + Delta-G solvation = 27.207466 kcal Electronic energy + Delta-G solvation = -24260.106656 eV Core-core repulsion = 21187.108167 eV Total energy + Delta-G solvation = -3072.998489 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.17453 -38.22377 -34.86982 -33.35659 -32.25873 -30.92644 -30.47914 -28.25008 -27.30604 -26.61927 -25.57861 -23.62241 -22.57595 -22.12591 -21.15231 -19.27526 -18.45131 -16.77128 -16.29107 -16.16342 -15.51736 -15.19885 -14.57879 -14.39776 -14.07333 -13.76936 -13.49482 -13.27316 -13.07700 -12.83806 -12.49036 -12.31049 -12.20807 -11.99162 -11.97126 -11.67191 -11.49700 -11.31930 -11.21299 -11.02518 -10.90970 -10.83328 -10.72186 -10.63293 -10.38843 -9.96535 -9.90045 -9.55186 -9.04768 -8.94351 -8.80426 -8.50078 -8.30035 -7.86822 -5.95019 -3.95439 1.42395 1.50913 3.33684 3.41485 3.45640 3.82856 4.20131 4.50989 4.81940 4.92390 5.04138 5.10201 5.17546 5.23201 5.30436 5.38477 5.40973 5.45474 5.56119 5.62423 5.67625 5.69565 5.80949 5.85665 5.91389 5.92787 6.00647 6.09644 6.11284 6.16764 6.23045 6.27610 6.37534 6.41077 6.45809 6.53339 6.57431 6.62685 6.68858 6.78529 7.05878 7.10121 7.24362 7.27500 7.49735 7.56046 7.75186 7.93037 8.06333 8.50900 9.11478 9.67802 11.16499 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.003859 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.367800 B = 7253.399489 C = 7658.420420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.068 3.932 3 C -0.150 4.150 4 N -0.519 5.519 5 C 0.038 3.962 6 C -0.077 4.077 7 H 0.064 0.936 8 C -0.141 4.141 9 C 0.029 3.971 10 C -0.510 4.510 11 H 0.056 0.944 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.887 3.113 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.286 1.286 18 C 0.113 3.887 19 H 0.052 0.948 20 C -0.155 4.155 21 C -0.054 4.054 22 C -0.088 4.088 23 C -0.124 4.124 24 C -0.130 4.130 25 C -0.126 4.126 26 C -0.123 4.123 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.037 0.963 35 H 0.084 0.916 36 H 0.037 0.963 37 H 0.036 0.964 38 H 0.065 0.935 39 H 0.013 0.987 40 H 0.012 0.988 41 H 0.258 0.742 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.130 0.870 46 H 0.117 0.883 47 H 0.114 0.886 48 H 0.115 0.885 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.809 20.547 3.094 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.040 4.040 3 C -0.208 4.208 4 N -0.243 5.243 5 C -0.089 4.089 6 C -0.096 4.096 7 H 0.083 0.917 8 C -0.197 4.197 9 C -0.009 4.009 10 C -0.548 4.548 11 H 0.075 0.925 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.716 3.284 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.212 1.212 18 C 0.004 3.996 19 H 0.070 0.930 20 C -0.212 4.212 21 C -0.055 4.055 22 C -0.106 4.106 23 C -0.142 4.142 24 C -0.148 4.148 25 C -0.144 4.144 26 C -0.141 4.141 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.032 0.968 40 H 0.031 0.969 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.148 0.852 46 H 0.135 0.865 47 H 0.132 0.868 48 H 0.133 0.867 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.248 20.314 3.121 20.590 hybrid contribution -0.416 -0.585 -0.493 0.871 sum 0.832 19.729 2.628 19.921 Atomic orbital electron populations 1.22518 0.98240 1.02346 1.01395 1.22007 0.92303 0.94675 0.95063 1.22164 1.01911 0.95596 1.01093 1.62389 1.58435 1.02717 1.00712 1.22841 0.96488 0.87653 1.01907 1.21163 0.99399 0.95957 0.93051 0.91724 1.22043 0.98744 1.00789 0.98172 1.19124 0.96658 0.88721 0.96372 1.21285 1.25036 0.90898 1.17588 0.92545 1.25010 0.95557 0.98513 0.95455 1.69973 1.37877 1.13333 1.32525 0.86607 0.80020 0.81267 0.80538 1.19758 1.21125 1.21183 1.20566 0.94345 0.93380 0.91264 0.93044 1.22153 1.03389 0.99404 0.96265 1.19821 0.94849 0.93276 0.97551 1.21072 0.91724 1.00355 0.97472 1.21186 0.99200 0.93501 1.00361 1.21060 0.96417 0.95997 1.01364 1.20988 0.92919 0.99093 1.01426 1.20962 0.98761 0.93027 1.01366 0.93033 0.92694 0.91619 0.88446 0.91951 0.93242 0.92326 0.94442 0.89838 0.94381 0.94454 0.91573 0.96821 0.96926 0.93225 0.91199 0.92613 0.91190 0.85243 0.86455 0.86775 0.86728 0.86805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 8.09 37.16 0.30 -2.03 16 2 C 0.07 0.90 2.54 -67.72 -0.17 0.73 16 3 C -0.15 -1.80 7.63 37.16 0.28 -1.52 16 4 N -0.52 -7.45 3.98 -220.11 -0.88 -8.33 16 5 C 0.04 0.63 3.93 -3.82 -0.02 0.61 16 6 C -0.08 -1.54 2.45 -90.62 -0.22 -1.76 16 7 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 8 C -0.14 -2.63 8.04 37.16 0.30 -2.33 16 9 C 0.03 0.73 4.41 -27.88 -0.12 0.60 16 10 C -0.51 -14.18 8.08 -34.44 -0.28 -14.46 16 11 H 0.06 1.54 7.30 -52.49 -0.38 1.16 16 12 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 14 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 18 C 0.11 1.43 1.89 -68.87 -0.13 1.30 16 19 H 0.05 0.64 5.45 -51.93 -0.28 0.35 16 20 C -0.15 -1.96 7.83 37.16 0.29 -1.67 16 21 C -0.05 -0.66 2.68 -104.62 -0.28 -0.94 16 22 C -0.09 -1.12 8.86 -39.58 -0.35 -1.47 16 23 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 24 C -0.13 -1.35 10.05 -39.58 -0.40 -1.74 16 25 C -0.13 -1.28 10.05 -39.58 -0.40 -1.68 16 26 C -0.12 -1.34 7.82 -39.58 -0.31 -1.65 16 27 H 0.05 0.63 6.29 -51.93 -0.33 0.30 16 28 H 0.05 0.61 8.04 -51.93 -0.42 0.19 16 29 H 0.06 0.90 5.21 -51.93 -0.27 0.63 16 30 H 0.10 1.43 4.83 -51.93 -0.25 1.18 16 31 H 0.06 0.82 7.31 -51.93 -0.38 0.44 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.67 4.61 -51.93 -0.24 0.43 16 34 H 0.04 0.62 5.25 -51.93 -0.27 0.35 16 35 H 0.08 1.43 4.62 -51.93 -0.24 1.19 16 36 H 0.04 0.64 5.85 -51.93 -0.30 0.33 16 37 H 0.04 0.65 6.00 -51.93 -0.31 0.34 16 38 H 0.07 1.39 6.64 -51.93 -0.34 1.04 16 39 H 0.01 0.36 8.05 -51.93 -0.42 -0.05 16 40 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.07 0.95 7.91 -51.93 -0.41 0.54 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.91 6.17 -51.93 -0.32 0.59 16 45 H 0.13 1.80 7.98 -52.49 -0.42 1.38 16 46 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 47 H 0.11 0.95 8.06 -52.48 -0.42 0.52 16 48 H 0.11 0.92 8.06 -52.49 -0.42 0.50 16 49 H 0.11 1.09 7.91 -52.49 -0.42 0.67 16 LS Contribution 358.43 15.07 5.40 5.40 Total: -1.00 -29.08 358.43 -9.86 -38.94 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -8.10 Total: 1.80 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: -2.00 Total: -28.35 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: -0.14 Total: -34.48 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.08 -9.86 -38.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602671397.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.145 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds