Wall clock time and date at job start Tue Mar 31 2020 06:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46967 * 2 1 4 4 N 1.46893 * 109.47507 * 119.99948 * 2 1 3 5 5 C 1.46896 * 110.99841 * 52.48302 * 4 2 1 6 6 C 1.53003 * 109.47451 * 78.67646 * 5 4 2 7 7 H 1.08997 * 109.46943 * 42.64111 * 6 5 4 8 8 C 1.53005 * 109.47034 * 282.64240 * 6 5 4 9 9 C 1.53000 * 109.47446 * 162.64335 * 6 5 4 10 10 C 1.50703 * 109.47173 * 185.00111 * 9 6 5 11 11 H 1.07993 * 119.99664 * 359.97438 * 10 9 6 12 12 C 1.37879 * 119.99740 * 179.97438 * 10 9 6 13 13 N 1.31508 * 120.00173 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99606 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47453 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47262 * 120.00254 * 14 12 10 17 17 H 1.48503 * 109.47272 * 240.00074 * 14 12 10 18 18 C 1.46900 * 111.00354 * 288.52880 * 4 2 1 19 19 H 1.09002 * 109.46594 * 35.41732 * 18 4 2 20 20 C 1.52997 * 109.47175 * 155.41598 * 18 4 2 21 21 C 1.50702 * 109.46830 * 275.41868 * 18 4 2 22 22 C 1.38229 * 120.00105 * 311.48962 * 21 18 4 23 23 C 1.38238 * 120.00190 * 179.81429 * 22 21 18 24 24 C 1.38240 * 119.99381 * 0.39349 * 23 22 21 25 25 C 1.38227 * 120.00532 * 359.85686 * 24 23 22 26 26 C 1.38238 * 119.99579 * 131.76660 * 21 18 4 27 27 H 1.09000 * 109.47143 * 284.13789 * 1 2 3 28 28 H 1.09000 * 109.47753 * 44.13416 * 1 2 3 29 29 H 1.08998 * 109.47227 * 164.14144 * 1 2 3 30 30 H 1.09003 * 109.46606 * 240.00663 * 2 1 3 31 31 H 1.08995 * 109.47213 * 176.10168 * 3 2 1 32 32 H 1.09001 * 109.47137 * 296.09956 * 3 2 1 33 33 H 1.08997 * 109.47159 * 56.10000 * 3 2 1 34 34 H 1.09000 * 109.47536 * 318.67541 * 5 4 2 35 35 H 1.09003 * 109.47472 * 198.67409 * 5 4 2 36 36 H 1.09005 * 109.46998 * 83.01965 * 8 6 5 37 37 H 1.09000 * 109.46958 * 323.01893 * 8 6 5 38 38 H 1.08999 * 109.46900 * 203.02006 * 8 6 5 39 39 H 1.09002 * 109.46689 * 304.99939 * 9 6 5 40 40 H 1.08996 * 109.47412 * 64.99939 * 9 6 5 41 41 H 0.96997 * 119.99773 * 179.97438 * 13 12 10 42 42 H 1.09002 * 109.47249 * 60.00536 * 20 18 4 43 43 H 1.09004 * 109.46666 * 179.97438 * 20 18 4 44 44 H 1.08994 * 109.47276 * 299.99849 * 20 18 4 45 45 H 1.08002 * 120.00060 * 359.97438 * 22 21 18 46 46 H 1.07991 * 120.00283 * 180.22797 * 23 22 21 47 47 H 1.08007 * 119.99069 * 179.83408 * 24 23 22 48 48 H 1.07997 * 120.00500 * 179.97438 * 25 24 23 49 49 H 1.07998 * 120.00518 * 359.96971 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.4078 -2.0218 1.3264 6 6 2.1066 -2.9978 0.3776 7 1 3.1837 -2.8360 0.4186 8 6 1.6097 -2.7646 -1.0506 9 6 1.7902 -4.4341 0.7995 10 6 2.5751 -5.3937 -0.0573 11 1 3.2333 -5.0169 -0.8261 12 6 2.4527 -6.7528 0.1403 13 7 1.6507 -7.2116 1.0762 14 14 3.4261 -7.9423 -0.9213 15 1 4.2483 -7.1787 -1.8941 16 1 4.3137 -8.7629 -0.0589 17 1 2.4897 -8.8309 -1.6553 18 6 1.7844 0.1128 2.4052 19 1 0.8431 0.6531 2.3033 20 6 1.7153 -0.8060 3.6266 21 6 2.9122 1.0970 2.5800 22 6 4.2234 0.6684 2.4918 23 6 5.2579 1.5719 2.6483 24 6 4.9811 2.9025 2.9010 25 6 3.6700 3.3301 2.9943 26 6 2.6354 2.4273 2.8341 27 1 -0.3633 0.2510 0.9965 28 1 -0.3634 0.7375 -0.7156 29 1 -0.3633 -0.9885 -0.2808 30 1 1.8932 -0.5138 -0.8901 31 1 3.1276 1.4434 0.0699 32 1 1.7348 1.9358 -0.9229 33 1 1.6206 1.9761 0.8529 34 1 0.3500 -1.9609 1.0706 35 1 1.5137 -2.3741 2.3525 36 1 2.1634 -1.9388 -1.4976 37 1 0.5475 -2.5211 -1.0305 38 1 1.7644 -3.6676 -1.6411 39 1 2.0633 -4.5740 1.8454 40 1 0.7241 -4.6232 0.6738 41 1 1.5644 -8.1677 1.2149 42 1 2.6566 -1.3462 3.7286 43 1 1.5412 -0.2083 4.5214 44 1 0.8996 -1.5178 3.5002 45 1 4.4396 -0.3719 2.2981 46 1 6.2823 1.2377 2.5758 47 1 5.7894 3.6078 3.0259 48 1 3.4537 4.3696 3.1922 49 1 1.6110 2.7615 2.9070 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602671397.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:58 Heat of formation + Delta-G solvation = 13.101005 kcal Electronic energy + Delta-G solvation = -24260.718358 eV Core-core repulsion = 21187.108167 eV Total energy + Delta-G solvation = -3073.610191 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.20978 -39.25731 -36.55593 -34.44586 -34.16701 -31.93077 -31.48780 -29.44203 -28.81529 -27.95013 -26.96754 -25.11325 -23.81676 -23.20354 -22.13768 -20.80276 -19.71249 -18.36867 -17.66358 -17.29986 -16.78319 -16.35435 -16.19460 -15.57210 -15.18804 -14.97723 -14.68951 -14.36308 -14.15192 -14.10159 -14.09313 -13.68308 -13.55347 -13.22504 -13.11196 -12.88453 -12.79746 -12.72918 -12.54891 -12.38447 -12.33855 -12.24352 -12.01081 -11.73339 -11.67468 -11.54648 -11.52629 -11.13676 -10.92968 -10.74688 -10.51409 -9.65663 -9.39078 -9.02932 -8.15754 -6.23927 0.57268 0.65425 1.39477 1.40272 1.53042 2.42803 2.89015 3.15603 3.17646 3.86474 3.97839 4.07509 4.17295 4.25193 4.27644 4.30479 4.35235 4.38397 4.44283 4.49002 4.58755 4.66657 4.74052 4.76250 4.80440 4.87501 4.92492 4.96084 4.98826 5.01214 5.09859 5.12590 5.23771 5.25258 5.30344 5.31704 5.35822 5.44180 5.50630 5.58710 5.66715 5.70087 5.76698 5.86390 5.87378 5.94825 6.22996 6.28860 6.39163 6.41821 6.92172 7.43842 8.96299 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.003859 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.367800 B = 7253.399489 C = 7658.420420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.065 3.935 3 C -0.140 4.140 4 N -0.525 5.525 5 C 0.051 3.949 6 C -0.066 4.066 7 H 0.049 0.951 8 C -0.130 4.130 9 C 0.037 3.963 10 C -0.525 4.525 11 H 0.057 0.943 12 C -0.001 4.001 13 N -0.934 5.934 14 Si 0.957 3.043 15 H -0.263 1.263 16 H -0.280 1.280 17 H -0.279 1.279 18 C 0.117 3.883 19 H 0.063 0.937 20 C -0.153 4.153 21 C -0.062 4.062 22 C -0.107 4.107 23 C -0.134 4.134 24 C -0.131 4.131 25 C -0.125 4.125 26 C -0.125 4.125 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.039 0.961 39 H -0.014 1.014 40 H -0.012 1.012 41 H 0.261 0.739 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.106 0.894 46 H 0.126 0.874 47 H 0.137 0.863 48 H 0.141 0.859 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.029 23.023 2.547 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.043 4.043 3 C -0.197 4.197 4 N -0.249 5.249 5 C -0.076 4.076 6 C -0.085 4.085 7 H 0.068 0.932 8 C -0.187 4.187 9 C -0.001 4.001 10 C -0.563 4.563 11 H 0.076 0.924 12 C -0.198 4.198 13 N -0.575 5.575 14 Si 0.783 3.217 15 H -0.188 1.188 16 H -0.206 1.206 17 H -0.205 1.205 18 C 0.009 3.991 19 H 0.081 0.919 20 C -0.210 4.210 21 C -0.063 4.063 22 C -0.126 4.126 23 C -0.152 4.152 24 C -0.149 4.149 25 C -0.142 4.142 26 C -0.143 4.143 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.004 0.996 40 H 0.007 0.993 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.124 0.876 46 H 0.144 0.856 47 H 0.155 0.845 48 H 0.159 0.841 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.475 22.808 2.567 22.999 hybrid contribution -0.462 -1.300 -0.279 1.408 sum 1.013 21.508 2.289 21.653 Atomic orbital electron populations 1.22446 0.97266 1.02040 1.02169 1.22023 0.93063 0.95349 0.93836 1.22066 1.00944 0.94497 1.02239 1.62267 1.58495 1.01995 1.02117 1.22526 0.96179 0.88560 1.00346 1.20941 0.98863 0.93781 0.94932 0.93202 1.21925 0.99851 1.00355 0.96582 1.18992 0.94693 0.91898 0.94510 1.21655 1.25125 0.91766 1.17764 0.92436 1.25901 0.96613 1.00509 0.96779 1.70100 1.39404 1.13871 1.34174 0.85508 0.78600 0.78780 0.78838 1.18751 1.20580 1.20516 1.20573 0.95228 0.93202 0.90079 0.91933 1.22113 1.02110 0.99431 0.97324 1.19746 0.94100 0.93854 0.98570 1.20989 0.92778 0.99643 0.99150 1.21353 0.99320 0.94071 1.00457 1.21367 0.97484 0.95739 1.00309 1.21333 0.92519 1.00272 1.00125 1.21162 0.99998 0.92317 1.00817 0.92596 0.90857 0.93125 0.89862 0.93305 0.91752 0.91471 0.94150 0.90640 0.92111 0.93262 0.94162 0.99598 0.99319 0.93013 0.92919 0.90875 0.92008 0.87570 0.85642 0.84484 0.84101 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.17 8.09 71.98 0.58 -3.59 16 2 C 0.07 1.66 2.54 44.92 0.11 1.77 16 3 C -0.14 -3.05 7.63 71.98 0.55 -2.50 16 4 N -0.52 -15.01 3.98 -850.28 -3.39 -18.39 16 5 C 0.05 1.75 3.93 86.30 0.34 2.09 16 6 C -0.07 -2.75 2.45 -10.79 -0.03 -2.78 16 7 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 8 C -0.13 -4.92 8.04 71.98 0.58 -4.34 16 9 C 0.04 1.94 4.41 29.85 0.13 2.07 16 10 C -0.52 -30.08 8.08 25.60 0.21 -29.87 16 11 H 0.06 3.21 7.30 -2.91 -0.02 3.19 16 12 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 13 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 14 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 15 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 18 C 0.12 2.87 1.89 44.17 0.08 2.96 16 19 H 0.06 1.41 5.45 -2.39 -0.01 1.40 16 20 C -0.15 -3.88 7.83 71.98 0.56 -3.32 16 21 C -0.06 -1.44 2.68 -19.87 -0.05 -1.49 16 22 C -0.11 -2.73 8.86 22.27 0.20 -2.53 16 23 C -0.13 -2.92 10.05 22.27 0.22 -2.69 16 24 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 25 C -0.12 -2.13 10.05 22.27 0.22 -1.90 16 26 C -0.12 -2.37 7.82 22.27 0.17 -2.20 16 27 H 0.06 1.24 6.29 -2.39 -0.02 1.22 16 28 H 0.07 1.42 8.04 -2.39 -0.02 1.40 16 29 H 0.05 1.32 5.21 -2.39 -0.01 1.31 16 30 H 0.08 2.35 4.83 -2.39 -0.01 2.33 16 31 H 0.05 1.20 7.31 -2.39 -0.02 1.19 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.34 4.61 -2.39 -0.01 1.33 16 34 H 0.04 1.36 5.25 -2.39 -0.01 1.35 16 35 H 0.08 2.71 4.62 -2.39 -0.01 2.70 16 36 H 0.06 2.01 5.85 -2.38 -0.01 2.00 16 37 H 0.05 1.71 6.00 -2.39 -0.01 1.70 16 38 H 0.04 1.71 6.64 -2.39 -0.02 1.69 16 39 H -0.01 -0.83 8.05 -2.39 -0.02 -0.85 16 40 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 41 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 42 H 0.05 1.50 7.91 -2.39 -0.02 1.48 16 43 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.06 1.65 6.17 -2.39 -0.01 1.64 16 45 H 0.11 3.14 7.98 -2.91 -0.02 3.11 16 46 H 0.13 2.40 8.06 -2.92 -0.02 2.38 16 47 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 48 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 49 H 0.13 2.02 7.91 -2.91 -0.02 2.00 16 Total: -1.00 -63.87 358.43 4.41 -59.46 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.91 Total: 19.08 kcal Atomic # 6 Polarization: -54.64 SS G_CDS: 4.57 Total: -50.06 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -3.10 Total: -75.61 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -63.87 4.41 -59.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602671397.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.566 kcal (2) G-P(sol) polarization free energy of solvation -63.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds