Wall clock time and date at job start Tue Mar 31 2020 06:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46878 * 2 1 4 4 N 1.46893 * 109.47623 * 119.99996 * 2 1 3 5 5 C 1.46898 * 111.00030 * 301.58026 * 4 2 1 6 6 C 1.53002 * 109.47170 * 203.66538 * 5 4 2 7 7 H 1.08997 * 109.47027 * 301.02555 * 6 5 4 8 8 C 1.52996 * 109.47280 * 61.02678 * 6 5 4 9 9 C 1.53001 * 109.47171 * 181.02780 * 6 5 4 10 10 C 1.50705 * 109.47025 * 175.00164 * 9 6 5 11 11 H 1.07996 * 119.99696 * 359.97438 * 10 9 6 12 12 C 1.37876 * 119.99466 * 179.97438 * 10 9 6 13 13 N 1.31513 * 120.00609 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99573 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.46635 * 90.00386 * 14 12 10 16 16 H 1.48494 * 109.47266 * 210.00224 * 14 12 10 17 17 H 1.48496 * 109.47154 * 330.00807 * 14 12 10 18 18 C 1.46905 * 110.99903 * 65.53107 * 4 2 1 19 19 H 1.08998 * 109.46975 * 284.17733 * 18 4 2 20 20 C 1.53001 * 109.46984 * 44.17541 * 18 4 2 21 21 C 1.50700 * 109.47345 * 164.17464 * 18 4 2 22 22 C 1.38239 * 119.99739 * 309.49344 * 21 18 4 23 23 C 1.38235 * 119.99872 * 179.81050 * 22 21 18 24 24 C 1.38242 * 119.99903 * 0.38673 * 23 22 21 25 25 C 1.38240 * 119.99991 * 359.86350 * 24 23 22 26 26 C 1.38233 * 119.99766 * 359.95280 * 25 24 23 27 27 H 1.08997 * 109.47192 * 305.57242 * 1 2 3 28 28 H 1.08992 * 109.47873 * 65.57926 * 1 2 3 29 29 H 1.09008 * 109.46764 * 185.57754 * 1 2 3 30 30 H 1.09001 * 109.46984 * 240.00691 * 2 1 3 31 31 H 1.09004 * 109.47328 * 182.68810 * 3 2 1 32 32 H 1.09002 * 109.47446 * 302.68437 * 3 2 1 33 33 H 1.08994 * 109.47105 * 62.68479 * 3 2 1 34 34 H 1.08999 * 109.46862 * 323.66366 * 5 4 2 35 35 H 1.08999 * 109.47338 * 83.66385 * 5 4 2 36 36 H 1.09010 * 109.46840 * 306.97399 * 8 6 5 37 37 H 1.08999 * 109.47324 * 66.97016 * 8 6 5 38 38 H 1.08994 * 109.47521 * 186.97403 * 8 6 5 39 39 H 1.08998 * 109.46922 * 294.99817 * 9 6 5 40 40 H 1.08994 * 109.47191 * 54.99705 * 9 6 5 41 41 H 0.96995 * 119.99882 * 180.02562 * 13 12 10 42 42 H 1.08995 * 109.46909 * 179.97438 * 20 18 4 43 43 H 1.09002 * 109.47173 * 300.00135 * 20 18 4 44 44 H 1.09008 * 109.47063 * 60.00108 * 20 18 4 45 45 H 1.07998 * 120.00082 * 359.97438 * 22 21 18 46 46 H 1.08000 * 120.00451 * 180.22773 * 23 22 21 47 47 H 1.08001 * 120.00017 * 179.83657 * 24 23 22 48 48 H 1.07996 * 119.99874 * 179.97438 * 25 24 23 49 49 H 1.07996 * 119.99978 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1993 5 6 1.5182 -0.0485 2.4207 6 6 2.4541 -0.3696 3.5877 7 1 2.5075 -1.4497 3.7241 8 6 3.8512 0.1761 3.2860 9 6 1.9178 0.2799 4.8651 10 6 2.7700 -0.1365 6.0362 11 1 3.6098 -0.7985 5.8846 12 6 2.4775 0.3277 7.3011 13 7 1.4546 1.1334 7.4857 14 14 3.5334 -0.1890 8.7529 15 1 4.6463 0.7791 8.9248 16 1 2.7040 -0.2134 9.9844 17 1 4.0894 -1.5431 8.5035 18 6 1.6597 -2.1164 1.1690 19 1 0.6021 -2.2288 1.4076 20 6 1.9305 -2.6813 -0.2269 21 6 2.4858 -2.8651 2.1829 22 6 3.8593 -2.7100 2.2056 23 6 4.6167 -3.3938 3.1381 24 6 4.0015 -4.2389 4.0428 25 6 2.6285 -4.3980 4.0166 26 6 1.8708 -3.7113 3.0866 27 1 -0.3633 0.5978 0.8359 28 1 -0.3634 0.4248 -0.9356 29 1 -0.3633 -1.0229 0.0999 30 1 1.8933 -0.5137 -0.8901 31 1 3.1289 1.4430 -0.0482 32 1 1.6378 1.9701 -0.8649 33 1 1.7164 1.9422 0.9130 34 1 1.4790 1.0306 2.2726 35 1 0.5184 -0.4212 2.6436 36 1 4.1824 -0.1905 2.3143 37 1 3.8207 1.2655 3.2721 38 1 4.5460 -0.1581 4.0564 39 1 1.9478 1.3645 4.7614 40 1 0.8896 -0.0409 5.0317 41 1 1.2491 1.4602 8.3756 42 1 1.6638 -3.7378 -0.2492 43 1 1.3330 -2.1397 -0.9602 44 1 2.9882 -2.5687 -0.4655 45 1 4.3403 -2.0525 1.4966 46 1 5.6894 -3.2698 3.1584 47 1 4.5935 -4.7752 4.7696 48 1 2.1480 -5.0585 4.7231 49 1 0.7982 -3.8358 3.0659 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602671398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:02 Heat of formation + Delta-G solvation = 18.621287 kcal Electronic energy + Delta-G solvation = -24983.675241 eV Core-core repulsion = 21910.304428 eV Total energy + Delta-G solvation = -3073.370813 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.97892 -37.90371 -34.83416 -33.31501 -32.14785 -30.48677 -29.71196 -28.97860 -27.04596 -26.57705 -25.14727 -23.53424 -22.66911 -22.12607 -20.66338 -19.28978 -18.41745 -16.56930 -16.24781 -15.75919 -15.29460 -15.01435 -14.37739 -14.32894 -14.13375 -13.65534 -13.50960 -13.01256 -12.79674 -12.65530 -12.41794 -12.41002 -12.20576 -11.90977 -11.78377 -11.72712 -11.28871 -11.23858 -11.14745 -11.02649 -10.77822 -10.67740 -10.56114 -10.47498 -10.23830 -10.15225 -10.06707 -9.46821 -8.97906 -8.84447 -8.42503 -8.25735 -8.03504 -7.89914 -5.88704 -3.88033 1.78455 1.88573 3.37366 3.43397 3.47298 4.05072 4.32962 4.55732 4.90586 5.01478 5.16604 5.23263 5.31768 5.40800 5.45291 5.46427 5.47389 5.55432 5.59463 5.69755 5.77007 5.83633 5.86030 5.95057 5.98442 6.02663 6.05900 6.11461 6.19955 6.27774 6.39131 6.40141 6.44009 6.48025 6.58089 6.71364 6.87234 6.92102 6.96960 7.02102 7.23347 7.30773 7.38692 7.43765 7.55779 7.60118 7.82134 8.00548 8.13736 8.59709 9.18711 9.74531 11.23152 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014160 B = 0.006235 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.954676 B = 4489.932337 C = 5723.987955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.071 3.929 3 C -0.146 4.146 4 N -0.519 5.519 5 C 0.057 3.943 6 C -0.088 4.088 7 H 0.074 0.926 8 C -0.118 4.118 9 C 0.029 3.971 10 C -0.500 4.500 11 H 0.055 0.945 12 C 0.054 3.946 13 N -0.900 5.900 14 Si 0.885 3.115 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.274 1.274 18 C 0.121 3.879 19 H 0.046 0.954 20 C -0.147 4.147 21 C -0.063 4.063 22 C -0.082 4.082 23 C -0.123 4.123 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.116 4.116 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.027 0.973 36 H 0.046 0.954 37 H 0.032 0.968 38 H 0.045 0.955 39 H 0.010 0.990 40 H 0.007 0.993 41 H 0.257 0.743 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.123 0.877 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.039 -7.419 -16.208 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.038 4.038 3 C -0.203 4.203 4 N -0.243 5.243 5 C -0.070 4.070 6 C -0.107 4.107 7 H 0.092 0.908 8 C -0.175 4.175 9 C -0.008 4.008 10 C -0.539 4.539 11 H 0.073 0.927 12 C -0.146 4.146 13 N -0.540 5.540 14 Si 0.713 3.287 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.199 1.199 18 C 0.013 3.987 19 H 0.064 0.936 20 C -0.204 4.204 21 C -0.063 4.063 22 C -0.100 4.100 23 C -0.141 4.141 24 C -0.138 4.138 25 C -0.135 4.135 26 C -0.135 4.135 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.028 0.972 40 H 0.026 0.974 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.141 0.859 46 H 0.132 0.868 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.456 -7.284 -16.082 17.715 hybrid contribution -0.501 -0.119 1.214 1.319 sum 0.955 -7.403 -14.868 16.637 Atomic orbital electron populations 1.22515 0.98095 1.01850 1.02079 1.21803 0.92342 0.95411 0.94197 1.21905 1.01744 0.95073 1.01597 1.62308 1.59256 1.00617 1.02137 1.22414 0.96614 0.98578 0.89366 1.21412 0.94087 1.01522 0.93632 0.90753 1.21571 0.97304 0.99085 0.99543 1.19104 0.95691 0.95372 0.90666 1.21220 1.12830 1.27805 0.92028 0.92710 1.24997 0.95293 0.95472 0.98813 1.69968 1.28092 1.33972 1.22003 0.86701 0.80450 0.79011 0.82509 1.20834 1.21434 1.19932 1.20505 0.96091 0.88227 0.93850 0.93582 1.22012 1.02561 1.00404 0.95444 1.19521 0.94148 0.96377 0.96259 1.20855 0.93204 0.97455 0.98495 1.21059 0.99552 0.97356 0.96129 1.21032 0.94848 0.99258 0.98711 1.20966 0.94072 1.00129 0.98356 1.20913 0.99251 0.97596 0.95733 0.92206 0.92698 0.92756 0.89844 0.91985 0.92906 0.91980 0.91195 0.95440 0.93489 0.94853 0.93623 0.97154 0.97432 0.93304 0.92448 0.92154 0.91675 0.85896 0.86763 0.86863 0.86702 0.86960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.13 8.29 37.16 0.31 -1.82 16 2 C 0.07 0.84 2.43 -67.72 -0.16 0.68 16 3 C -0.15 -1.72 9.15 37.16 0.34 -1.38 16 4 N -0.52 -7.36 3.16 -220.10 -0.70 -8.05 16 5 C 0.06 1.00 3.08 -3.82 -0.01 0.99 16 6 C -0.09 -1.83 1.83 -90.62 -0.17 -2.00 16 7 H 0.07 1.60 4.15 -51.93 -0.22 1.38 16 8 C -0.12 -2.34 7.99 37.16 0.30 -2.04 16 9 C 0.03 0.77 4.45 -27.88 -0.12 0.64 16 10 C -0.50 -14.35 8.49 -34.44 -0.29 -14.64 16 11 H 0.05 1.56 7.07 -52.49 -0.37 1.19 16 12 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -27.67 13.29 55.43 0.74 -26.93 16 14 Si 0.88 22.28 29.54 -169.99 -5.02 17.26 16 15 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 17 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 18 C 0.12 1.63 1.65 -68.86 -0.11 1.52 16 19 H 0.05 0.65 6.57 -51.93 -0.34 0.31 16 20 C -0.15 -1.58 8.20 37.16 0.30 -1.28 16 21 C -0.06 -0.94 2.59 -104.62 -0.27 -1.21 16 22 C -0.08 -1.23 6.34 -39.58 -0.25 -1.48 16 23 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 24 C -0.12 -1.83 10.05 -39.58 -0.40 -2.22 16 25 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 26 C -0.12 -1.80 8.95 -39.58 -0.35 -2.15 16 27 H 0.06 0.77 7.24 -51.93 -0.38 0.39 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.62 6.36 -51.92 -0.33 0.29 16 30 H 0.08 0.90 5.84 -51.93 -0.30 0.59 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.83 5.94 -51.93 -0.31 0.52 16 34 H 0.07 1.24 5.53 -51.93 -0.29 0.96 16 35 H 0.03 0.51 7.37 -51.93 -0.38 0.12 16 36 H 0.05 0.82 5.72 -51.92 -0.30 0.52 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.04 0.98 7.17 -51.93 -0.37 0.60 16 39 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.58 5.76 -51.93 -0.30 0.28 16 44 H 0.06 0.70 7.96 -51.92 -0.41 0.29 16 45 H 0.12 1.78 7.13 -52.49 -0.37 1.40 16 46 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 47 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 48 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 49 H 0.11 1.59 7.97 -52.49 -0.42 1.17 16 LS Contribution 363.60 15.07 5.48 5.48 Total: -1.00 -30.52 363.60 -9.74 -40.26 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -8.45 Total: 1.32 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: -1.79 Total: -29.33 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.04 Total: -34.98 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.52 -9.74 -40.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602671398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.886 kcal (2) G-P(sol) polarization free energy of solvation -30.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds