Wall clock time and date at job start Tue Mar 31 2020 06:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46878 * 2 1 4 4 N 1.46893 * 109.47623 * 119.99996 * 2 1 3 5 5 C 1.46898 * 111.00030 * 301.58026 * 4 2 1 6 6 C 1.53002 * 109.47170 * 203.66538 * 5 4 2 7 7 H 1.08997 * 109.47027 * 301.02555 * 6 5 4 8 8 C 1.52996 * 109.47280 * 61.02678 * 6 5 4 9 9 C 1.53001 * 109.47171 * 181.02780 * 6 5 4 10 10 C 1.50705 * 109.47025 * 175.00164 * 9 6 5 11 11 H 1.07996 * 119.99696 * 359.97438 * 10 9 6 12 12 C 1.37876 * 119.99466 * 179.97438 * 10 9 6 13 13 N 1.31513 * 120.00609 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99573 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.46635 * 90.00386 * 14 12 10 16 16 H 1.48494 * 109.47266 * 210.00224 * 14 12 10 17 17 H 1.48496 * 109.47154 * 330.00807 * 14 12 10 18 18 C 1.46905 * 110.99903 * 65.53107 * 4 2 1 19 19 H 1.08998 * 109.46975 * 284.17733 * 18 4 2 20 20 C 1.53001 * 109.46984 * 44.17541 * 18 4 2 21 21 C 1.50700 * 109.47345 * 164.17464 * 18 4 2 22 22 C 1.38239 * 119.99739 * 309.49344 * 21 18 4 23 23 C 1.38235 * 119.99872 * 179.81050 * 22 21 18 24 24 C 1.38242 * 119.99903 * 0.38673 * 23 22 21 25 25 C 1.38240 * 119.99991 * 359.86350 * 24 23 22 26 26 C 1.38233 * 119.99766 * 359.95280 * 25 24 23 27 27 H 1.08997 * 109.47192 * 305.57242 * 1 2 3 28 28 H 1.08992 * 109.47873 * 65.57926 * 1 2 3 29 29 H 1.09008 * 109.46764 * 185.57754 * 1 2 3 30 30 H 1.09001 * 109.46984 * 240.00691 * 2 1 3 31 31 H 1.09004 * 109.47328 * 182.68810 * 3 2 1 32 32 H 1.09002 * 109.47446 * 302.68437 * 3 2 1 33 33 H 1.08994 * 109.47105 * 62.68479 * 3 2 1 34 34 H 1.08999 * 109.46862 * 323.66366 * 5 4 2 35 35 H 1.08999 * 109.47338 * 83.66385 * 5 4 2 36 36 H 1.09010 * 109.46840 * 306.97399 * 8 6 5 37 37 H 1.08999 * 109.47324 * 66.97016 * 8 6 5 38 38 H 1.08994 * 109.47521 * 186.97403 * 8 6 5 39 39 H 1.08998 * 109.46922 * 294.99817 * 9 6 5 40 40 H 1.08994 * 109.47191 * 54.99705 * 9 6 5 41 41 H 0.96995 * 119.99882 * 180.02562 * 13 12 10 42 42 H 1.08995 * 109.46909 * 179.97438 * 20 18 4 43 43 H 1.09002 * 109.47173 * 300.00135 * 20 18 4 44 44 H 1.09008 * 109.47063 * 60.00108 * 20 18 4 45 45 H 1.07998 * 120.00082 * 359.97438 * 22 21 18 46 46 H 1.08000 * 120.00451 * 180.22773 * 23 22 21 47 47 H 1.08001 * 120.00017 * 179.83657 * 24 23 22 48 48 H 1.07996 * 119.99874 * 179.97438 * 25 24 23 49 49 H 1.07996 * 119.99978 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1993 5 6 1.5182 -0.0485 2.4207 6 6 2.4541 -0.3696 3.5877 7 1 2.5075 -1.4497 3.7241 8 6 3.8512 0.1761 3.2860 9 6 1.9178 0.2799 4.8651 10 6 2.7700 -0.1365 6.0362 11 1 3.6098 -0.7985 5.8846 12 6 2.4775 0.3277 7.3011 13 7 1.4546 1.1334 7.4857 14 14 3.5334 -0.1890 8.7529 15 1 4.6463 0.7791 8.9248 16 1 2.7040 -0.2134 9.9844 17 1 4.0894 -1.5431 8.5035 18 6 1.6597 -2.1164 1.1690 19 1 0.6021 -2.2288 1.4076 20 6 1.9305 -2.6813 -0.2269 21 6 2.4858 -2.8651 2.1829 22 6 3.8593 -2.7100 2.2056 23 6 4.6167 -3.3938 3.1381 24 6 4.0015 -4.2389 4.0428 25 6 2.6285 -4.3980 4.0166 26 6 1.8708 -3.7113 3.0866 27 1 -0.3633 0.5978 0.8359 28 1 -0.3634 0.4248 -0.9356 29 1 -0.3633 -1.0229 0.0999 30 1 1.8933 -0.5137 -0.8901 31 1 3.1289 1.4430 -0.0482 32 1 1.6378 1.9701 -0.8649 33 1 1.7164 1.9422 0.9130 34 1 1.4790 1.0306 2.2726 35 1 0.5184 -0.4212 2.6436 36 1 4.1824 -0.1905 2.3143 37 1 3.8207 1.2655 3.2721 38 1 4.5460 -0.1581 4.0564 39 1 1.9478 1.3645 4.7614 40 1 0.8896 -0.0409 5.0317 41 1 1.2491 1.4602 8.3756 42 1 1.6638 -3.7378 -0.2492 43 1 1.3330 -2.1397 -0.9602 44 1 2.9882 -2.5687 -0.4655 45 1 4.3403 -2.0525 1.4966 46 1 5.6894 -3.2698 3.1584 47 1 4.5935 -4.7752 4.7696 48 1 2.1480 -5.0585 4.7231 49 1 0.7982 -3.8358 3.0659 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602671398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:01 Heat of formation + Delta-G solvation = 3.755703 kcal Electronic energy + Delta-G solvation = -24984.319861 eV Core-core repulsion = 21910.304428 eV Total energy + Delta-G solvation = -3074.015434 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.15396 -39.03968 -36.63192 -34.35629 -34.22732 -31.64509 -30.95672 -30.20370 -28.54819 -27.94749 -26.67191 -24.62357 -24.56526 -23.28580 -21.78414 -20.89898 -19.64748 -18.41296 -17.70337 -16.97499 -16.56704 -16.44583 -16.13181 -15.60540 -15.31638 -14.83887 -14.77421 -14.34519 -14.28923 -14.03439 -13.76558 -13.62597 -13.60534 -13.19470 -13.04019 -12.83728 -12.75336 -12.72977 -12.56159 -12.33883 -12.28273 -12.17242 -12.13258 -11.84225 -11.73679 -11.53609 -11.31401 -11.20544 -10.91828 -10.78676 -10.51240 -9.60528 -9.27610 -9.10064 -8.15215 -6.22859 0.62100 0.70896 1.37481 1.38602 1.49590 2.42109 2.90211 3.17651 3.18077 3.85647 3.98791 4.10231 4.22340 4.25943 4.28175 4.35788 4.42171 4.44106 4.50185 4.60324 4.68179 4.73495 4.74925 4.80617 4.85623 4.88818 4.92695 5.00211 5.03853 5.08979 5.15363 5.20367 5.27638 5.29654 5.33340 5.36126 5.46150 5.48136 5.55719 5.58473 5.67002 5.72767 5.79339 5.84354 5.89570 5.98874 6.25506 6.28780 6.39333 6.42559 6.92888 7.44691 8.97117 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014160 B = 0.006235 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.954676 B = 4489.932337 C = 5723.987955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.070 3.930 3 C -0.144 4.144 4 N -0.517 5.517 5 C 0.072 3.928 6 C -0.077 4.077 7 H 0.072 0.928 8 C -0.104 4.104 9 C 0.037 3.963 10 C -0.513 4.513 11 H 0.055 0.945 12 C -0.002 4.002 13 N -0.938 5.938 14 Si 0.954 3.046 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.264 1.264 18 C 0.120 3.880 19 H 0.038 0.962 20 C -0.139 4.139 21 C -0.069 4.069 22 C -0.089 4.089 23 C -0.132 4.132 24 C -0.135 4.135 25 C -0.132 4.132 26 C -0.135 4.135 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.012 0.988 36 H 0.074 0.926 37 H 0.023 0.977 38 H 0.027 0.973 39 H -0.019 1.019 40 H -0.025 1.025 41 H 0.260 0.740 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.131 0.869 46 H 0.132 0.868 47 H 0.128 0.872 48 H 0.126 0.874 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 -8.235 -17.754 19.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.038 4.038 3 C -0.201 4.201 4 N -0.240 5.240 5 C -0.056 4.056 6 C -0.096 4.096 7 H 0.091 0.909 8 C -0.162 4.162 9 C -0.001 4.001 10 C -0.552 4.552 11 H 0.074 0.926 12 C -0.199 4.199 13 N -0.579 5.579 14 Si 0.779 3.221 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.188 1.188 18 C 0.012 3.988 19 H 0.056 0.944 20 C -0.196 4.196 21 C -0.070 4.070 22 C -0.107 4.107 23 C -0.150 4.150 24 C -0.153 4.153 25 C -0.150 4.150 26 C -0.154 4.154 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.126 0.874 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.030 0.970 36 H 0.093 0.907 37 H 0.042 0.958 38 H 0.046 0.954 39 H 0.000 1.000 40 H -0.007 1.007 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.149 0.851 46 H 0.150 0.850 47 H 0.146 0.854 48 H 0.144 0.856 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.656 -8.108 -17.649 19.603 hybrid contribution -0.915 0.141 1.675 1.914 sum 1.742 -7.966 -15.974 17.935 Atomic orbital electron populations 1.22469 0.97625 1.01687 1.02357 1.21951 0.92737 0.95461 0.93613 1.21896 1.01740 0.95015 1.01485 1.62222 1.59161 1.01114 1.01521 1.22065 0.94923 0.98601 0.90024 1.21212 0.95215 1.00706 0.92448 0.90949 1.21443 0.96010 0.98350 1.00362 1.18990 0.93949 0.93790 0.93329 1.21536 1.12957 1.27658 0.93016 0.92634 1.25897 0.96580 0.95404 1.01980 1.70106 1.29817 1.35139 1.22842 0.85605 0.78727 0.79109 0.78631 1.19887 1.20928 1.18817 1.20572 0.95362 0.87519 0.95308 0.94384 1.21961 1.03117 1.00914 0.93597 1.19742 0.94523 0.96284 0.96429 1.20987 0.93217 0.97698 0.98763 1.21359 1.00621 0.97069 0.95917 1.21314 0.95013 0.99657 0.99293 1.21237 0.94564 1.00503 0.98710 1.21137 0.99746 0.98220 0.96258 0.94321 0.90509 0.92687 0.87412 0.92070 0.90654 0.94209 0.91621 0.96976 0.90688 0.95785 0.95377 1.00015 1.00659 0.93120 0.91697 0.90540 0.91266 0.85130 0.85039 0.85377 0.85639 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.82 8.29 71.98 0.60 -3.22 16 2 C 0.07 1.50 2.43 44.92 0.11 1.61 16 3 C -0.14 -3.12 9.15 71.98 0.66 -2.46 16 4 N -0.52 -13.93 3.16 -850.28 -2.69 -16.62 16 5 C 0.07 2.55 3.08 86.30 0.27 2.82 16 6 C -0.08 -3.28 1.83 -10.79 -0.02 -3.30 16 7 H 0.07 3.14 4.15 -2.39 -0.01 3.13 16 8 C -0.10 -4.13 7.99 71.98 0.58 -3.55 16 9 C 0.04 2.03 4.45 29.85 0.13 2.16 16 10 C -0.51 -30.05 8.49 25.60 0.22 -29.83 16 11 H 0.06 3.18 7.07 -2.91 -0.02 3.16 16 12 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 13 N -0.94 -59.01 13.29 21.45 0.28 -58.73 16 14 Si 0.95 45.91 29.54 68.60 2.03 47.93 16 15 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 16 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 17 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 18 C 0.12 3.06 1.65 44.17 0.07 3.13 16 19 H 0.04 1.05 6.57 -2.39 -0.02 1.03 16 20 C -0.14 -2.58 8.20 71.98 0.59 -1.99 16 21 C -0.07 -2.01 2.59 -19.87 -0.05 -2.06 16 22 C -0.09 -2.52 6.34 22.27 0.14 -2.38 16 23 C -0.13 -3.76 10.05 22.27 0.22 -3.54 16 24 C -0.13 -3.97 10.05 22.27 0.22 -3.74 16 25 C -0.13 -4.02 10.05 22.27 0.22 -3.80 16 26 C -0.14 -4.15 8.95 22.27 0.20 -3.95 16 27 H 0.04 0.97 7.24 -2.39 -0.02 0.95 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.14 6.36 -2.38 -0.02 1.13 16 30 H 0.11 1.88 5.84 -2.39 -0.01 1.86 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.04 1.04 5.94 -2.39 -0.01 1.03 16 34 H 0.07 2.40 5.53 -2.39 -0.01 2.38 16 35 H 0.01 0.46 7.37 -2.39 -0.02 0.44 16 36 H 0.07 2.52 5.72 -2.38 -0.01 2.50 16 37 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.03 1.18 7.17 -2.39 -0.02 1.16 16 39 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 40 H -0.02 -1.51 8.14 -2.39 -0.02 -1.53 16 41 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 43 H 0.08 1.18 5.76 -2.39 -0.01 1.17 16 44 H 0.07 1.26 7.96 -2.38 -0.02 1.24 16 45 H 0.13 3.46 7.13 -2.91 -0.02 3.44 16 46 H 0.13 3.20 8.06 -2.91 -0.02 3.17 16 47 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 48 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 49 H 0.12 3.35 7.97 -2.91 -0.02 3.32 16 Total: -1.00 -66.82 363.60 5.14 -61.67 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.90 Total: 19.51 kcal Atomic # 6 Polarization: -58.39 SS G_CDS: 4.62 Total: -53.77 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -2.41 Total: -75.34 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -66.82 5.14 -61.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602671398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.430 kcal (2) G-P(sol) polarization free energy of solvation -66.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds