Wall clock time and date at job start Tue Mar 31 2020 06:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47422 * 2 1 4 4 N 1.46909 * 109.46905 * 119.99476 * 2 1 3 5 5 C 1.46900 * 111.00009 * 327.51496 * 4 2 1 6 6 C 1.53009 * 109.46749 * 287.09426 * 5 4 2 7 7 H 1.08999 * 109.46817 * 63.14027 * 6 5 4 8 8 C 1.52996 * 109.47041 * 303.14253 * 6 5 4 9 9 C 1.53002 * 109.46862 * 183.14100 * 6 5 4 10 10 C 1.50698 * 109.46838 * 185.00097 * 9 6 5 11 11 H 1.08002 * 120.00075 * 359.97438 * 10 9 6 12 12 C 1.37874 * 120.00148 * 180.02562 * 10 9 6 13 13 N 1.31518 * 119.99620 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00415 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47291 * 59.99410 * 14 12 10 16 16 H 1.48504 * 109.47298 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47117 * 299.99813 * 14 12 10 18 18 C 1.46905 * 110.99752 * 91.46488 * 4 2 1 19 19 H 1.09000 * 109.46792 * 296.04788 * 18 4 2 20 20 C 1.53001 * 109.46908 * 176.04781 * 18 4 2 21 21 C 1.50696 * 109.47068 * 56.04779 * 18 4 2 22 22 C 1.38229 * 120.00106 * 39.72354 * 21 18 4 23 23 C 1.38244 * 120.00029 * 179.79048 * 22 21 18 24 24 C 1.38236 * 119.99560 * 0.43817 * 23 22 21 25 25 C 1.38230 * 120.00326 * 359.81604 * 24 23 22 26 26 C 1.38237 * 119.99813 * 219.99753 * 21 18 4 27 27 H 1.09002 * 109.46839 * 300.00392 * 1 2 3 28 28 H 1.09004 * 109.46473 * 60.00061 * 1 2 3 29 29 H 1.08999 * 109.47544 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47342 * 239.99310 * 2 1 3 31 31 H 1.09001 * 109.46943 * 172.21857 * 3 2 1 32 32 H 1.09009 * 109.46672 * 292.21534 * 3 2 1 33 33 H 1.08998 * 109.47355 * 52.21312 * 3 2 1 34 34 H 1.09004 * 109.47169 * 167.09791 * 5 4 2 35 35 H 1.09002 * 109.47493 * 47.09123 * 5 4 2 36 36 H 1.08995 * 109.47284 * 180.02562 * 8 6 5 37 37 H 1.09006 * 109.47014 * 299.99973 * 8 6 5 38 38 H 1.08997 * 109.47860 * 59.99542 * 8 6 5 39 39 H 1.09003 * 109.47150 * 304.99982 * 9 6 5 40 40 H 1.09000 * 109.47015 * 65.00001 * 9 6 5 41 41 H 0.97004 * 119.99713 * 180.02562 * 13 12 10 42 42 H 1.09002 * 109.47076 * 300.00052 * 20 18 4 43 43 H 1.08997 * 109.47204 * 59.99683 * 20 18 4 44 44 H 1.08999 * 109.46730 * 179.97438 * 20 18 4 45 45 H 1.08000 * 120.00615 * 359.97438 * 22 21 18 46 46 H 1.08001 * 120.00008 * 180.27725 * 23 22 21 47 47 H 1.07999 * 119.99339 * 179.83897 * 24 23 22 48 48 H 1.08001 * 120.00206 * 179.97438 * 25 24 23 49 49 H 1.07997 * 120.00167 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 1.1044 -0.4954 2.3316 6 6 1.2321 0.9397 2.8468 7 1 0.9241 1.6348 2.0658 8 6 2.6871 1.2161 3.2307 9 6 0.3372 1.1223 4.0743 10 6 0.3678 2.5652 4.5079 11 1 0.9661 3.2804 3.9629 12 6 -0.3671 2.9723 5.6012 13 7 -1.0952 2.1014 6.2652 14 14 -0.3286 4.7607 6.1392 15 1 -0.8229 5.6208 5.0342 16 1 -1.1973 4.9380 7.3305 17 1 1.0646 5.1451 6.4803 18 6 2.2281 -2.1221 0.9339 19 1 1.2730 -2.5906 0.6968 20 6 2.8296 -2.7887 2.1728 21 6 3.1702 -2.2844 -0.2311 22 6 4.2618 -1.4461 -0.3592 23 6 5.1284 -1.5978 -1.4256 24 6 4.8981 -2.5819 -2.3687 25 6 3.8036 -3.4167 -2.2434 26 6 2.9394 -3.2678 -1.1747 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1212 1.4455 0.1391 32 1 1.7948 1.9145 -0.9515 33 1 1.5676 1.9950 0.8121 34 1 1.3590 -1.1922 3.1303 35 1 0.0797 -0.6746 2.0059 36 1 2.7780 2.2382 3.5982 37 1 2.9952 0.5208 4.0117 38 1 3.3247 1.0859 2.3564 39 1 -0.6854 0.8399 3.8237 40 1 0.7000 0.4913 4.8856 41 1 -1.6126 2.3878 7.0341 42 1 3.7848 -2.3200 2.4099 43 1 2.1483 -2.6712 3.0154 44 1 2.9839 -3.8495 1.9758 45 1 4.4395 -0.6746 0.3754 46 1 5.9838 -0.9457 -1.5232 47 1 5.5737 -2.6986 -3.2031 48 1 3.6235 -4.1853 -2.9805 49 1 2.0843 -3.9202 -1.0769 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602671399.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:06 Heat of formation + Delta-G solvation = 22.198991 kcal Electronic energy + Delta-G solvation = -24282.686829 eV Core-core repulsion = 21209.471156 eV Total energy + Delta-G solvation = -3073.215673 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.06141 -38.28086 -34.75041 -33.49222 -32.04988 -30.90276 -30.39331 -28.34519 -27.26519 -26.72167 -25.46416 -23.49091 -22.68685 -22.18174 -20.79280 -19.30093 -18.81130 -16.82427 -16.44675 -16.03056 -15.35094 -15.00225 -14.64543 -14.38402 -14.14900 -13.69619 -13.35594 -13.18821 -13.03794 -12.83339 -12.60701 -12.42807 -12.30835 -11.98891 -11.80872 -11.57854 -11.38717 -11.13502 -11.08165 -10.98263 -10.91941 -10.81524 -10.67494 -10.54708 -10.32842 -10.19124 -10.13600 -9.37103 -8.95603 -8.92554 -8.90312 -8.64202 -8.28482 -7.86971 -5.94284 -3.94952 1.32743 1.40855 3.36202 3.40597 3.43108 3.76246 4.13309 4.51074 4.68938 4.89126 4.95896 5.12320 5.18798 5.30507 5.32374 5.41649 5.45617 5.50264 5.58914 5.60843 5.68706 5.81019 5.89316 5.92946 5.97910 6.01091 6.07013 6.12660 6.17154 6.18810 6.28167 6.31578 6.43453 6.45121 6.48690 6.53982 6.64703 6.65217 6.73114 6.89867 7.00050 7.19757 7.27873 7.31125 7.50990 7.56468 7.74500 7.92139 8.07044 8.51287 9.11533 9.68206 11.17227 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.029135 B = 0.003635 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.819643 B = 7700.399615 C = 7853.735952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.079 3.921 3 C -0.150 4.150 4 N -0.519 5.519 5 C 0.045 3.955 6 C -0.084 4.084 7 H 0.066 0.934 8 C -0.121 4.121 9 C 0.028 3.972 10 C -0.510 4.510 11 H 0.055 0.945 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.888 3.112 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.277 1.277 18 C 0.118 3.882 19 H 0.042 0.958 20 C -0.142 4.142 21 C -0.069 4.069 22 C -0.089 4.089 23 C -0.126 4.126 24 C -0.128 4.128 25 C -0.125 4.125 26 C -0.121 4.121 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.049 0.951 37 H 0.036 0.964 38 H 0.045 0.955 39 H 0.010 0.990 40 H 0.014 0.986 41 H 0.259 0.741 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.133 0.867 46 H 0.118 0.882 47 H 0.116 0.884 48 H 0.117 0.883 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.317 -10.382 -16.098 21.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.029 4.029 3 C -0.208 4.208 4 N -0.243 5.243 5 C -0.081 4.081 6 C -0.103 4.103 7 H 0.084 0.916 8 C -0.178 4.178 9 C -0.010 4.010 10 C -0.548 4.548 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.716 3.284 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.203 1.203 18 C 0.010 3.990 19 H 0.060 0.940 20 C -0.199 4.199 21 C -0.070 4.070 22 C -0.107 4.107 23 C -0.144 4.144 24 C -0.146 4.146 25 C -0.143 4.143 26 C -0.139 4.139 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.028 0.972 40 H 0.032 0.968 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.151 0.849 46 H 0.136 0.864 47 H 0.134 0.866 48 H 0.135 0.865 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.651 -10.201 -15.806 21.143 hybrid contribution -0.913 0.541 0.123 1.068 sum 8.738 -9.660 -15.683 20.387 Atomic orbital electron populations 1.22500 0.97558 1.01309 1.02998 1.21641 0.92751 0.95853 0.92701 1.22146 1.01762 0.95298 1.01558 1.62360 1.48248 1.08345 1.05383 1.22590 0.93778 0.99894 0.91883 1.21409 0.96902 0.92769 0.99202 0.91583 1.21575 0.96057 1.00736 0.99425 1.19117 0.93768 0.96654 0.91455 1.21198 1.26980 0.94481 1.12191 0.92692 1.25008 0.95643 0.97152 0.96710 1.69959 1.29961 1.33872 1.19963 0.86723 0.77914 0.85735 0.78004 1.20355 1.21442 1.20295 1.20531 0.95417 0.90011 0.93088 0.93974 1.21895 1.02050 0.99245 0.96724 1.19843 0.96182 0.95492 0.95467 1.21151 0.93318 0.98559 0.97689 1.21199 0.99614 0.98435 0.95129 1.21098 0.97895 0.96335 0.99246 1.21033 0.95418 0.99706 0.98172 1.21027 0.99700 0.98542 0.94656 0.90359 0.92808 0.93506 0.91152 0.92299 0.93673 0.90381 0.91131 0.94085 0.93243 0.94522 0.93560 0.97158 0.96800 0.93120 0.91581 0.91573 0.92729 0.84885 0.86366 0.86630 0.86542 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.59 7.86 37.16 0.29 -2.29 16 2 C 0.08 1.08 2.28 -67.71 -0.15 0.92 16 3 C -0.15 -2.09 8.22 37.16 0.31 -1.78 16 4 N -0.52 -7.30 2.66 -220.09 -0.59 -7.89 16 5 C 0.05 0.76 3.81 -3.82 -0.01 0.74 16 6 C -0.08 -1.67 1.50 -90.62 -0.14 -1.80 16 7 H 0.07 1.33 4.13 -51.93 -0.21 1.11 16 8 C -0.12 -2.29 8.58 37.16 0.32 -1.97 16 9 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 10 C -0.51 -14.17 8.41 -34.44 -0.29 -14.46 16 11 H 0.05 1.49 7.06 -52.49 -0.37 1.12 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 14 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 C 0.12 1.49 2.27 -68.86 -0.16 1.33 16 19 H 0.04 0.54 7.88 -51.93 -0.41 0.13 16 20 C -0.14 -1.73 9.00 37.16 0.33 -1.40 16 21 C -0.07 -0.82 3.30 -104.63 -0.35 -1.17 16 22 C -0.09 -1.05 8.57 -39.58 -0.34 -1.39 16 23 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 24 C -0.13 -1.24 10.05 -39.59 -0.40 -1.64 16 25 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 26 C -0.12 -1.30 9.67 -39.58 -0.38 -1.69 16 27 H 0.08 1.26 5.30 -51.93 -0.28 0.99 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.63 7.87 -51.93 -0.41 0.22 16 30 H 0.07 0.95 6.03 -51.93 -0.31 0.64 16 31 H 0.06 0.80 7.76 -51.93 -0.40 0.40 16 32 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.08 1.25 4.70 -51.93 -0.24 1.00 16 34 H 0.07 1.21 5.60 -51.93 -0.29 0.92 16 35 H 0.04 0.70 5.41 -51.93 -0.28 0.42 16 36 H 0.05 1.02 6.95 -51.93 -0.36 0.66 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.78 6.45 -51.93 -0.34 0.44 16 39 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.86 6.08 -51.93 -0.32 0.54 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.13 1.67 7.71 -52.49 -0.40 1.26 16 46 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 47 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 48 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 49 H 0.12 1.11 8.04 -52.49 -0.42 0.69 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -29.02 366.74 -9.73 -38.75 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -8.41 Total: 1.02 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: -1.98 Total: -27.87 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.15 Total: -34.15 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.02 -9.73 -38.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602671399.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.952 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds