Wall clock time and date at job start Tue Mar 31 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47422 * 2 1 4 4 N 1.46909 * 109.46905 * 119.99476 * 2 1 3 5 5 C 1.46900 * 111.00009 * 327.51496 * 4 2 1 6 6 C 1.53009 * 109.46749 * 287.09426 * 5 4 2 7 7 H 1.08999 * 109.46817 * 63.14027 * 6 5 4 8 8 C 1.52996 * 109.47041 * 303.14253 * 6 5 4 9 9 C 1.53002 * 109.46862 * 183.14100 * 6 5 4 10 10 C 1.50698 * 109.46838 * 185.00097 * 9 6 5 11 11 H 1.08002 * 120.00075 * 359.97438 * 10 9 6 12 12 C 1.37874 * 120.00148 * 180.02562 * 10 9 6 13 13 N 1.31518 * 119.99620 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00415 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47291 * 59.99410 * 14 12 10 16 16 H 1.48504 * 109.47298 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47117 * 299.99813 * 14 12 10 18 18 C 1.46905 * 110.99752 * 91.46488 * 4 2 1 19 19 H 1.09000 * 109.46792 * 296.04788 * 18 4 2 20 20 C 1.53001 * 109.46908 * 176.04781 * 18 4 2 21 21 C 1.50696 * 109.47068 * 56.04779 * 18 4 2 22 22 C 1.38229 * 120.00106 * 39.72354 * 21 18 4 23 23 C 1.38244 * 120.00029 * 179.79048 * 22 21 18 24 24 C 1.38236 * 119.99560 * 0.43817 * 23 22 21 25 25 C 1.38230 * 120.00326 * 359.81604 * 24 23 22 26 26 C 1.38237 * 119.99813 * 219.99753 * 21 18 4 27 27 H 1.09002 * 109.46839 * 300.00392 * 1 2 3 28 28 H 1.09004 * 109.46473 * 60.00061 * 1 2 3 29 29 H 1.08999 * 109.47544 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47342 * 239.99310 * 2 1 3 31 31 H 1.09001 * 109.46943 * 172.21857 * 3 2 1 32 32 H 1.09009 * 109.46672 * 292.21534 * 3 2 1 33 33 H 1.08998 * 109.47355 * 52.21312 * 3 2 1 34 34 H 1.09004 * 109.47169 * 167.09791 * 5 4 2 35 35 H 1.09002 * 109.47493 * 47.09123 * 5 4 2 36 36 H 1.08995 * 109.47284 * 180.02562 * 8 6 5 37 37 H 1.09006 * 109.47014 * 299.99973 * 8 6 5 38 38 H 1.08997 * 109.47860 * 59.99542 * 8 6 5 39 39 H 1.09003 * 109.47150 * 304.99982 * 9 6 5 40 40 H 1.09000 * 109.47015 * 65.00001 * 9 6 5 41 41 H 0.97004 * 119.99713 * 180.02562 * 13 12 10 42 42 H 1.09002 * 109.47076 * 300.00052 * 20 18 4 43 43 H 1.08997 * 109.47204 * 59.99683 * 20 18 4 44 44 H 1.08999 * 109.46730 * 179.97438 * 20 18 4 45 45 H 1.08000 * 120.00615 * 359.97438 * 22 21 18 46 46 H 1.08001 * 120.00008 * 180.27725 * 23 22 21 47 47 H 1.07999 * 119.99339 * 179.83897 * 24 23 22 48 48 H 1.08001 * 120.00206 * 179.97438 * 25 24 23 49 49 H 1.07997 * 120.00167 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 1.1044 -0.4954 2.3316 6 6 1.2321 0.9397 2.8468 7 1 0.9241 1.6348 2.0658 8 6 2.6871 1.2161 3.2307 9 6 0.3372 1.1223 4.0743 10 6 0.3678 2.5652 4.5079 11 1 0.9661 3.2804 3.9629 12 6 -0.3671 2.9723 5.6012 13 7 -1.0952 2.1014 6.2652 14 14 -0.3286 4.7607 6.1392 15 1 -0.8229 5.6208 5.0342 16 1 -1.1973 4.9380 7.3305 17 1 1.0646 5.1451 6.4803 18 6 2.2281 -2.1221 0.9339 19 1 1.2730 -2.5906 0.6968 20 6 2.8296 -2.7887 2.1728 21 6 3.1702 -2.2844 -0.2311 22 6 4.2618 -1.4461 -0.3592 23 6 5.1284 -1.5978 -1.4256 24 6 4.8981 -2.5819 -2.3687 25 6 3.8036 -3.4167 -2.2434 26 6 2.9394 -3.2678 -1.1747 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1212 1.4455 0.1391 32 1 1.7948 1.9145 -0.9515 33 1 1.5676 1.9950 0.8121 34 1 1.3590 -1.1922 3.1303 35 1 0.0797 -0.6746 2.0059 36 1 2.7780 2.2382 3.5982 37 1 2.9952 0.5208 4.0117 38 1 3.3247 1.0859 2.3564 39 1 -0.6854 0.8399 3.8237 40 1 0.7000 0.4913 4.8856 41 1 -1.6126 2.3878 7.0341 42 1 3.7848 -2.3200 2.4099 43 1 2.1483 -2.6712 3.0154 44 1 2.9839 -3.8495 1.9758 45 1 4.4395 -0.6746 0.3754 46 1 5.9838 -0.9457 -1.5232 47 1 5.5737 -2.6986 -3.2031 48 1 3.6235 -4.1853 -2.9805 49 1 2.0843 -3.9202 -1.0769 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602671399.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:05 Heat of formation + Delta-G solvation = 9.406464 kcal Electronic energy + Delta-G solvation = -24283.241555 eV Core-core repulsion = 21209.471156 eV Total energy + Delta-G solvation = -3073.770398 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.08744 -39.31797 -36.38319 -34.70021 -33.96489 -31.68772 -31.46667 -29.43072 -28.88997 -28.20093 -26.84450 -25.08548 -23.80841 -23.18315 -21.81964 -20.74014 -20.14180 -18.39209 -17.71698 -17.36353 -16.52669 -16.23353 -16.10507 -15.61386 -15.25897 -14.77430 -14.62627 -14.36084 -14.22854 -14.11772 -13.98513 -13.73238 -13.52218 -13.34599 -13.15384 -12.84154 -12.73309 -12.66805 -12.57348 -12.29856 -12.25976 -12.15528 -12.03049 -11.80780 -11.78730 -11.66094 -11.49326 -11.16947 -10.83977 -10.64066 -10.46572 -9.70975 -9.49273 -9.06400 -8.14770 -6.23186 0.52788 0.61875 1.40411 1.42969 1.50455 2.43350 2.88990 3.06363 3.18652 3.75274 3.98745 4.10296 4.17872 4.26222 4.30367 4.35269 4.38419 4.41263 4.49299 4.55956 4.64138 4.72125 4.73819 4.80668 4.82200 4.84576 4.93921 5.00115 5.00621 5.07358 5.08823 5.20556 5.21265 5.27733 5.32518 5.37024 5.43731 5.49765 5.56972 5.63503 5.66285 5.67754 5.73917 5.82035 5.89908 6.00890 6.19745 6.26345 6.37186 6.40761 6.93148 7.44750 8.97077 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.029135 B = 0.003635 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.819643 B = 7700.399615 C = 7853.735952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.083 3.917 3 C -0.146 4.146 4 N -0.516 5.516 5 C 0.058 3.942 6 C -0.073 4.073 7 H 0.068 0.932 8 C -0.109 4.109 9 C 0.035 3.965 10 C -0.525 4.525 11 H 0.060 0.940 12 C -0.002 4.002 13 N -0.936 5.936 14 Si 0.957 3.043 15 H -0.268 1.268 16 H -0.286 1.286 17 H -0.268 1.268 18 C 0.120 3.880 19 H 0.042 0.958 20 C -0.138 4.138 21 C -0.080 4.080 22 C -0.102 4.102 23 C -0.131 4.131 24 C -0.128 4.128 25 C -0.127 4.127 26 C -0.128 4.128 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.035 0.965 36 H 0.030 0.970 37 H 0.029 0.971 38 H 0.070 0.930 39 H -0.018 1.018 40 H -0.015 1.015 41 H 0.261 0.739 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.121 0.879 46 H 0.133 0.867 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.654 -10.406 -18.284 23.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.025 4.025 3 C -0.204 4.204 4 N -0.240 5.240 5 C -0.070 4.070 6 C -0.091 4.091 7 H 0.086 0.914 8 C -0.166 4.166 9 C -0.003 4.003 10 C -0.563 4.563 11 H 0.078 0.922 12 C -0.199 4.199 13 N -0.577 5.577 14 Si 0.782 3.218 15 H -0.193 1.193 16 H -0.211 1.211 17 H -0.193 1.193 18 C 0.012 3.988 19 H 0.060 0.940 20 C -0.195 4.195 21 C -0.081 4.081 22 C -0.120 4.120 23 C -0.149 4.149 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.147 4.147 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.001 0.999 40 H 0.004 0.996 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.139 0.861 46 H 0.151 0.849 47 H 0.157 0.843 48 H 0.157 0.843 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.002 -10.226 -18.009 23.450 hybrid contribution -1.307 0.483 0.741 1.579 sum 9.695 -9.742 -17.267 22.069 Atomic orbital electron populations 1.22437 0.97781 1.01357 1.02343 1.21645 0.92455 0.95789 0.92655 1.22088 1.01652 0.95136 1.01483 1.62280 1.47005 1.09837 1.04864 1.22284 0.94187 0.97573 0.92912 1.21205 0.96122 0.95002 0.96785 0.91445 1.21456 0.95778 0.99278 1.00090 1.19000 0.93252 0.95135 0.92909 1.21603 1.26722 0.95647 1.12291 0.92226 1.25918 0.95256 1.01846 0.96869 1.70100 1.30915 1.36145 1.20542 0.85619 0.78299 0.80138 0.77721 1.19271 1.21136 1.19296 1.20536 0.95800 0.88635 0.93835 0.94030 1.21858 1.01281 1.00214 0.96192 1.19741 0.96263 0.96512 0.95547 1.21120 0.93978 0.98693 0.98226 1.21417 0.99771 0.98929 0.94788 1.21426 0.98079 0.95583 0.99526 1.21345 0.94958 1.00022 0.98122 1.21203 1.00370 0.98386 0.94702 0.92981 0.91419 0.93129 0.90119 0.92005 0.92072 0.92677 0.91688 0.94667 0.95043 0.95214 0.91137 0.99931 0.99640 0.93061 0.92182 0.92827 0.91148 0.86087 0.84909 0.84293 0.84295 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.93 7.86 71.98 0.57 -4.36 16 2 C 0.08 2.16 2.28 44.91 0.10 2.26 16 3 C -0.15 -3.88 8.22 71.98 0.59 -3.29 16 4 N -0.52 -14.29 2.66 -850.22 -2.26 -16.55 16 5 C 0.06 1.99 3.81 86.31 0.33 2.31 16 6 C -0.07 -2.95 1.50 -10.79 -0.02 -2.97 16 7 H 0.07 2.77 4.13 -2.39 -0.01 2.76 16 8 C -0.11 -4.18 8.58 71.98 0.62 -3.56 16 9 C 0.03 1.83 4.45 29.85 0.13 1.96 16 10 C -0.52 -29.85 8.41 25.60 0.22 -29.63 16 11 H 0.06 3.27 7.06 -2.91 -0.02 3.25 16 12 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 13 N -0.94 -57.81 13.29 21.45 0.28 -57.52 16 14 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 16 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 C 0.12 2.93 2.27 44.17 0.10 3.03 16 19 H 0.04 1.03 7.88 -2.39 -0.02 1.01 16 20 C -0.14 -3.31 9.00 71.98 0.65 -2.66 16 21 C -0.08 -1.77 3.30 -19.87 -0.07 -1.83 16 22 C -0.10 -2.24 8.57 22.27 0.19 -2.05 16 23 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 24 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 25 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 26 C -0.13 -2.46 9.67 22.27 0.22 -2.25 16 27 H 0.05 1.70 5.30 -2.39 -0.01 1.69 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 1.32 7.87 -2.39 -0.02 1.30 16 30 H 0.08 2.01 6.03 -2.39 -0.01 2.00 16 31 H 0.06 1.59 7.76 -2.39 -0.02 1.57 16 32 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.05 1.73 4.70 -2.39 -0.01 1.72 16 34 H 0.06 2.30 5.60 -2.39 -0.01 2.29 16 35 H 0.04 1.25 5.41 -2.39 -0.01 1.24 16 36 H 0.03 1.29 6.95 -2.39 -0.02 1.27 16 37 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.07 2.34 6.45 -2.39 -0.02 2.33 16 39 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 40 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 41 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.05 1.40 6.08 -2.39 -0.01 1.39 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.12 2.90 7.71 -2.91 -0.02 2.88 16 46 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 47 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 48 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 49 H 0.13 2.11 8.04 -2.91 -0.02 2.08 16 Total: -1.00 -63.21 366.74 5.71 -57.50 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.90 Total: 18.21 kcal Atomic # 6 Polarization: -53.36 SS G_CDS: 4.76 Total: -48.60 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -1.98 Total: -74.07 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -63.21 5.71 -57.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602671399.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.905 kcal (2) G-P(sol) polarization free energy of solvation -63.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds