Wall clock time and date at job start Tue Mar 31 2020 06:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47518 * 2 1 4 4 N 1.46896 * 109.47053 * 119.99979 * 2 1 3 5 5 C 1.46904 * 111.00083 * 174.00699 * 4 2 1 6 6 C 1.53005 * 109.46894 * 272.42175 * 5 4 2 7 7 H 1.08997 * 109.47129 * 307.77533 * 6 5 4 8 8 C 1.52995 * 109.47152 * 67.77721 * 6 5 4 9 9 C 1.52999 * 109.46958 * 187.77134 * 6 5 4 10 10 C 1.50704 * 109.47281 * 174.99909 * 9 6 5 11 11 H 1.08000 * 119.99751 * 0.02562 * 10 9 6 12 12 C 1.37872 * 120.00222 * 179.97438 * 10 9 6 13 13 N 1.31519 * 119.99957 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99991 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47242 * 90.00302 * 14 12 10 16 16 H 1.48498 * 109.46806 * 210.00376 * 14 12 10 17 17 H 1.48505 * 109.46950 * 330.00050 * 14 12 10 18 18 C 1.46903 * 111.00092 * 297.96005 * 4 2 1 19 19 H 1.09000 * 109.46863 * 315.21408 * 18 4 2 20 20 C 1.52999 * 109.47184 * 195.21646 * 18 4 2 21 21 C 1.50690 * 109.47076 * 75.21632 * 18 4 2 22 22 C 1.38244 * 119.99697 * 224.00556 * 21 18 4 23 23 C 1.38229 * 119.99710 * 179.97438 * 22 21 18 24 24 C 1.38243 * 120.00357 * 359.97438 * 23 22 21 25 25 C 1.38227 * 119.99691 * 359.97438 * 24 23 22 26 26 C 1.38233 * 120.00521 * 43.98238 * 21 18 4 27 27 H 1.09004 * 109.47041 * 310.59069 * 1 2 3 28 28 H 1.09003 * 109.46744 * 70.58746 * 1 2 3 29 29 H 1.08995 * 109.47048 * 190.59040 * 1 2 3 30 30 H 1.08997 * 109.47024 * 239.99564 * 2 1 3 31 31 H 1.08994 * 109.47466 * 184.34543 * 3 2 1 32 32 H 1.09003 * 109.46802 * 304.33887 * 3 2 1 33 33 H 1.08998 * 109.47305 * 64.34242 * 3 2 1 34 34 H 1.08992 * 109.47424 * 32.41965 * 5 4 2 35 35 H 1.08999 * 109.47482 * 152.42733 * 5 4 2 36 36 H 1.09004 * 109.47420 * 36.22143 * 8 6 5 37 37 H 1.08997 * 109.47686 * 156.23011 * 8 6 5 38 38 H 1.09008 * 109.47141 * 276.22723 * 8 6 5 39 39 H 1.08996 * 109.47893 * 295.00289 * 9 6 5 40 40 H 1.09003 * 109.47007 * 55.00133 * 9 6 5 41 41 H 0.96999 * 119.99636 * 179.97438 * 13 12 10 42 42 H 1.09004 * 109.47262 * 59.99465 * 20 18 4 43 43 H 1.08998 * 109.47320 * 180.02562 * 20 18 4 44 44 H 1.09006 * 109.47034 * 300.00091 * 20 18 4 45 45 H 1.08000 * 120.00079 * 359.97438 * 22 21 18 46 46 H 1.08004 * 120.00084 * 179.97438 * 23 22 21 47 47 H 1.08001 * 120.00108 * 179.71810 * 24 23 22 48 48 H 1.08001 * 120.00086 * 179.97438 * 25 24 23 49 49 H 1.08000 * 119.99449 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.4811 -0.8373 1.1639 6 6 3.8480 -2.1256 0.4245 7 1 3.3008 -2.9623 0.8587 8 6 3.4797 -1.9876 -1.0540 9 6 5.3516 -2.3773 0.5540 10 6 5.6938 -3.7067 -0.0678 11 1 4.9167 -4.3114 -0.5114 12 6 6.9992 -4.1506 -0.0713 13 7 7.9456 -3.4140 0.4685 14 14 7.4234 -5.7982 -0.8428 15 1 7.7472 -5.6036 -2.2789 16 1 8.5966 -6.3836 -0.1457 17 1 6.2635 -6.7170 -0.7169 18 6 1.5889 0.0013 2.4206 19 1 1.7427 1.0739 2.3025 20 6 2.4083 -0.5036 3.6099 21 6 0.1274 -0.2728 2.6649 22 6 -0.7164 0.7576 3.0358 23 6 -2.0571 0.5063 3.2595 24 6 -2.5544 -0.7751 3.1118 25 6 -1.7108 -1.8051 2.7399 26 6 -0.3697 -1.5542 2.5178 27 1 -0.3633 0.6687 0.7804 28 1 -0.3633 0.3416 -0.9693 29 1 -0.3633 -1.0101 0.1889 30 1 1.8933 -0.5139 -0.8899 31 1 3.1272 1.4434 -0.0779 32 1 1.6147 1.9782 -0.8486 33 1 1.7417 1.9334 0.9263 34 1 3.9183 0.0161 0.6458 35 1 3.8668 -0.8807 2.1825 36 1 3.6629 -0.9637 -1.3801 37 1 4.0881 -2.6717 -1.6455 38 1 2.4254 -2.2290 -1.1899 39 1 5.8982 -1.5853 0.0421 40 1 5.6289 -2.3872 1.6082 41 1 8.8639 -3.7265 0.4663 42 1 3.4655 -0.3055 3.4331 43 1 2.0884 0.0108 4.5161 44 1 2.2545 -1.5763 3.7279 45 1 -0.3281 1.7588 3.1508 46 1 -2.7163 1.3111 3.5497 47 1 -3.6010 -0.9722 3.2910 48 1 -2.0991 -2.8063 2.6249 49 1 0.2895 -2.3591 2.2281 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602671400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:09 Heat of formation + Delta-G solvation = 28.414261 kcal Electronic energy + Delta-G solvation = -24278.405899 eV Core-core repulsion = 21205.459740 eV Total energy + Delta-G solvation = -3072.946158 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.22922 -38.13012 -34.88251 -33.28937 -32.27661 -30.89005 -30.59308 -28.28528 -27.03696 -26.79520 -25.62433 -23.66394 -22.55559 -22.11420 -21.14353 -19.15491 -18.67576 -16.75004 -16.25211 -16.04790 -15.55000 -15.23467 -14.62590 -14.42892 -13.91106 -13.82443 -13.54366 -13.27835 -13.12010 -12.95749 -12.49834 -12.32390 -12.15787 -12.07681 -11.93086 -11.62557 -11.45814 -11.31740 -11.23987 -11.02919 -10.96118 -10.80245 -10.72311 -10.51790 -10.40742 -10.03056 -9.88859 -9.53101 -9.04100 -8.96615 -8.80688 -8.45936 -8.29665 -7.87656 -5.94827 -3.95344 1.40211 1.48097 3.34759 3.41212 3.44764 3.81353 4.17768 4.51083 4.77771 4.90895 5.01623 5.08652 5.19671 5.23035 5.33267 5.40765 5.41039 5.46444 5.53392 5.61649 5.67020 5.73279 5.79762 5.81267 5.94610 5.99048 6.02819 6.07427 6.13657 6.15751 6.23523 6.29635 6.39399 6.42037 6.48349 6.53166 6.59081 6.60569 6.68247 6.76409 7.04546 7.08318 7.23500 7.27660 7.49459 7.56808 7.75044 7.92317 8.06461 8.51018 9.11378 9.67839 11.16663 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.023490 B = 0.003723 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.719906 B = 7519.348618 C = 7744.001186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.065 3.935 3 C -0.188 4.188 4 N -0.518 5.518 5 C 0.038 3.962 6 C -0.074 4.074 7 H 0.062 0.938 8 C -0.136 4.136 9 C 0.028 3.972 10 C -0.510 4.510 11 H 0.056 0.944 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.888 3.112 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.274 1.274 18 C 0.108 3.892 19 H 0.054 0.946 20 C -0.153 4.153 21 C -0.052 4.052 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.130 4.130 25 C -0.125 4.125 26 C -0.088 4.088 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.038 0.962 35 H 0.082 0.918 36 H 0.034 0.966 37 H 0.064 0.936 38 H 0.037 0.963 39 H 0.012 0.988 40 H 0.013 0.987 41 H 0.259 0.741 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.117 0.883 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.411 9.606 4.376 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.043 4.043 3 C -0.247 4.247 4 N -0.242 5.242 5 C -0.089 4.089 6 C -0.093 4.093 7 H 0.080 0.920 8 C -0.193 4.193 9 C -0.010 4.010 10 C -0.548 4.548 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.716 3.284 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.199 1.199 18 C 0.000 4.000 19 H 0.071 0.929 20 C -0.210 4.210 21 C -0.053 4.053 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.148 4.148 25 C -0.143 4.143 26 C -0.107 4.107 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.031 0.969 40 H 0.031 0.969 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.132 0.868 48 H 0.135 0.865 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.418 9.132 4.419 21.027 hybrid contribution 0.660 0.006 -0.480 0.817 sum -17.758 9.138 3.938 20.356 Atomic orbital electron populations 1.22226 0.95054 1.02583 1.00918 1.22010 0.95234 0.92200 0.94904 1.22489 1.01861 0.98713 1.01637 1.62340 1.12822 1.48805 1.00198 1.22800 0.85347 0.98770 1.01972 1.21131 0.99279 0.94828 0.94029 0.91958 1.21909 0.99295 1.00160 0.97906 1.19124 0.88599 0.96466 0.96781 1.21243 0.92879 1.03857 1.36868 0.92582 1.25012 0.96689 0.97128 0.95703 1.69969 1.00723 1.37640 1.45408 0.86656 0.77951 0.84471 0.79301 1.20806 1.21358 1.19890 1.20649 0.91018 0.96951 0.91375 0.92885 1.22126 1.00043 1.02546 0.96309 1.19782 0.94863 0.93439 0.97195 1.20960 0.93632 0.98560 1.01318 1.20991 0.95309 0.96786 1.01242 1.21056 0.99413 0.93257 1.01123 1.21178 0.94036 0.98912 1.00186 1.21085 0.94961 0.97087 0.97525 0.92085 0.93562 0.91628 0.88309 0.92190 0.92525 0.92632 0.94406 0.90022 0.94662 0.91668 0.94392 0.96921 0.96889 0.93171 0.90911 0.92584 0.91317 0.86794 0.86717 0.86779 0.86483 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 7.76 37.16 0.29 -1.56 16 2 C 0.06 0.87 2.70 -67.72 -0.18 0.68 16 3 C -0.19 -2.32 8.63 37.16 0.32 -2.00 16 4 N -0.52 -7.37 3.69 -220.11 -0.81 -8.19 16 5 C 0.04 0.63 4.25 -3.82 -0.02 0.61 16 6 C -0.07 -1.48 2.53 -90.62 -0.23 -1.71 16 7 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 8 C -0.14 -2.56 7.69 37.16 0.29 -2.27 16 9 C 0.03 0.70 4.44 -27.88 -0.12 0.58 16 10 C -0.51 -14.20 8.08 -34.44 -0.28 -14.48 16 11 H 0.06 1.53 7.31 -52.49 -0.38 1.15 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 14 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 18 C 0.11 1.37 2.14 -68.87 -0.15 1.22 16 19 H 0.05 0.66 5.30 -51.93 -0.28 0.38 16 20 C -0.15 -1.93 8.39 37.16 0.31 -1.62 16 21 C -0.05 -0.62 2.46 -104.63 -0.26 -0.88 16 22 C -0.13 -1.36 8.26 -39.58 -0.33 -1.69 16 23 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 24 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 25 C -0.13 -1.37 10.05 -39.59 -0.40 -1.77 16 26 C -0.09 -1.09 7.33 -39.58 -0.29 -1.38 16 27 H 0.06 0.73 4.90 -51.93 -0.25 0.48 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.86 6.45 -51.93 -0.33 0.53 16 30 H 0.10 1.45 4.31 -51.93 -0.22 1.22 16 31 H 0.06 0.80 6.39 -51.93 -0.33 0.47 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.65 5.85 -51.93 -0.30 0.34 16 34 H 0.04 0.64 5.67 -51.93 -0.29 0.35 16 35 H 0.08 1.37 4.48 -51.93 -0.23 1.14 16 36 H 0.03 0.62 7.01 -51.93 -0.36 0.26 16 37 H 0.06 1.38 6.64 -51.93 -0.34 1.03 16 38 H 0.04 0.65 7.13 -51.92 -0.37 0.28 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.07 0.96 5.76 -51.93 -0.30 0.66 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 45 H 0.11 1.09 8.01 -52.49 -0.42 0.67 16 46 H 0.11 0.91 8.06 -52.48 -0.42 0.49 16 47 H 0.11 0.92 8.06 -52.49 -0.42 0.49 16 48 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 49 H 0.13 1.77 7.84 -52.49 -0.41 1.36 16 LS Contribution 360.57 15.07 5.43 5.43 Total: -1.00 -29.01 360.57 -9.80 -38.82 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -8.21 Total: 1.56 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: -1.94 Total: -28.14 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: -0.08 Total: -34.38 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.01 -9.80 -38.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602671400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.233 kcal (2) G-P(sol) polarization free energy of solvation -29.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds