Wall clock time and date at job start Tue Mar 31 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47518 * 2 1 4 4 N 1.46896 * 109.47053 * 119.99979 * 2 1 3 5 5 C 1.46904 * 111.00083 * 174.00699 * 4 2 1 6 6 C 1.53005 * 109.46894 * 272.42175 * 5 4 2 7 7 H 1.08997 * 109.47129 * 307.77533 * 6 5 4 8 8 C 1.52995 * 109.47152 * 67.77721 * 6 5 4 9 9 C 1.52999 * 109.46958 * 187.77134 * 6 5 4 10 10 C 1.50704 * 109.47281 * 174.99909 * 9 6 5 11 11 H 1.08000 * 119.99751 * 0.02562 * 10 9 6 12 12 C 1.37872 * 120.00222 * 179.97438 * 10 9 6 13 13 N 1.31519 * 119.99957 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99991 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47242 * 90.00302 * 14 12 10 16 16 H 1.48498 * 109.46806 * 210.00376 * 14 12 10 17 17 H 1.48505 * 109.46950 * 330.00050 * 14 12 10 18 18 C 1.46903 * 111.00092 * 297.96005 * 4 2 1 19 19 H 1.09000 * 109.46863 * 315.21408 * 18 4 2 20 20 C 1.52999 * 109.47184 * 195.21646 * 18 4 2 21 21 C 1.50690 * 109.47076 * 75.21632 * 18 4 2 22 22 C 1.38244 * 119.99697 * 224.00556 * 21 18 4 23 23 C 1.38229 * 119.99710 * 179.97438 * 22 21 18 24 24 C 1.38243 * 120.00357 * 359.97438 * 23 22 21 25 25 C 1.38227 * 119.99691 * 359.97438 * 24 23 22 26 26 C 1.38233 * 120.00521 * 43.98238 * 21 18 4 27 27 H 1.09004 * 109.47041 * 310.59069 * 1 2 3 28 28 H 1.09003 * 109.46744 * 70.58746 * 1 2 3 29 29 H 1.08995 * 109.47048 * 190.59040 * 1 2 3 30 30 H 1.08997 * 109.47024 * 239.99564 * 2 1 3 31 31 H 1.08994 * 109.47466 * 184.34543 * 3 2 1 32 32 H 1.09003 * 109.46802 * 304.33887 * 3 2 1 33 33 H 1.08998 * 109.47305 * 64.34242 * 3 2 1 34 34 H 1.08992 * 109.47424 * 32.41965 * 5 4 2 35 35 H 1.08999 * 109.47482 * 152.42733 * 5 4 2 36 36 H 1.09004 * 109.47420 * 36.22143 * 8 6 5 37 37 H 1.08997 * 109.47686 * 156.23011 * 8 6 5 38 38 H 1.09008 * 109.47141 * 276.22723 * 8 6 5 39 39 H 1.08996 * 109.47893 * 295.00289 * 9 6 5 40 40 H 1.09003 * 109.47007 * 55.00133 * 9 6 5 41 41 H 0.96999 * 119.99636 * 179.97438 * 13 12 10 42 42 H 1.09004 * 109.47262 * 59.99465 * 20 18 4 43 43 H 1.08998 * 109.47320 * 180.02562 * 20 18 4 44 44 H 1.09006 * 109.47034 * 300.00091 * 20 18 4 45 45 H 1.08000 * 120.00079 * 359.97438 * 22 21 18 46 46 H 1.08004 * 120.00084 * 179.97438 * 23 22 21 47 47 H 1.08001 * 120.00108 * 179.71810 * 24 23 22 48 48 H 1.08001 * 120.00086 * 179.97438 * 25 24 23 49 49 H 1.08000 * 119.99449 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.4811 -0.8373 1.1639 6 6 3.8480 -2.1256 0.4245 7 1 3.3008 -2.9623 0.8587 8 6 3.4797 -1.9876 -1.0540 9 6 5.3516 -2.3773 0.5540 10 6 5.6938 -3.7067 -0.0678 11 1 4.9167 -4.3114 -0.5114 12 6 6.9992 -4.1506 -0.0713 13 7 7.9456 -3.4140 0.4685 14 14 7.4234 -5.7982 -0.8428 15 1 7.7472 -5.6036 -2.2789 16 1 8.5966 -6.3836 -0.1457 17 1 6.2635 -6.7170 -0.7169 18 6 1.5889 0.0013 2.4206 19 1 1.7427 1.0739 2.3025 20 6 2.4083 -0.5036 3.6099 21 6 0.1274 -0.2728 2.6649 22 6 -0.7164 0.7576 3.0358 23 6 -2.0571 0.5063 3.2595 24 6 -2.5544 -0.7751 3.1118 25 6 -1.7108 -1.8051 2.7399 26 6 -0.3697 -1.5542 2.5178 27 1 -0.3633 0.6687 0.7804 28 1 -0.3633 0.3416 -0.9693 29 1 -0.3633 -1.0101 0.1889 30 1 1.8933 -0.5139 -0.8899 31 1 3.1272 1.4434 -0.0779 32 1 1.6147 1.9782 -0.8486 33 1 1.7417 1.9334 0.9263 34 1 3.9183 0.0161 0.6458 35 1 3.8668 -0.8807 2.1825 36 1 3.6629 -0.9637 -1.3801 37 1 4.0881 -2.6717 -1.6455 38 1 2.4254 -2.2290 -1.1899 39 1 5.8982 -1.5853 0.0421 40 1 5.6289 -2.3872 1.6082 41 1 8.8639 -3.7265 0.4663 42 1 3.4655 -0.3055 3.4331 43 1 2.0884 0.0108 4.5161 44 1 2.2545 -1.5763 3.7279 45 1 -0.3281 1.7588 3.1508 46 1 -2.7163 1.3111 3.5497 47 1 -3.6010 -0.9722 3.2910 48 1 -2.0991 -2.8063 2.6249 49 1 0.2895 -2.3591 2.2281 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602671400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:08 Heat of formation + Delta-G solvation = 14.731870 kcal Electronic energy + Delta-G solvation = -24278.999212 eV Core-core repulsion = 21205.459740 eV Total energy + Delta-G solvation = -3073.539471 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.23662 -39.16589 -36.56785 -34.35286 -34.20150 -31.85784 -31.60336 -29.48522 -28.65146 -27.99462 -27.01870 -25.16248 -23.74524 -23.21710 -22.10840 -20.72059 -19.88489 -18.36669 -17.60931 -17.15793 -16.77209 -16.39688 -16.20191 -15.59375 -15.15312 -14.96513 -14.72784 -14.37720 -14.16486 -14.15247 -14.08330 -13.68733 -13.45482 -13.24287 -13.11186 -13.01956 -12.85998 -12.73064 -12.46968 -12.37997 -12.28185 -12.22402 -11.99213 -11.75515 -11.69263 -11.60947 -11.38500 -11.10994 -10.96856 -10.75066 -10.50573 -9.63203 -9.33185 -9.04186 -8.15353 -6.23617 0.57485 0.65497 1.40493 1.41199 1.52299 2.43142 2.89881 3.13410 3.17970 3.82549 3.95270 4.12823 4.20635 4.26218 4.27738 4.31148 4.36181 4.41366 4.46066 4.52637 4.57735 4.66750 4.74569 4.76696 4.81119 4.84143 4.90928 4.96974 5.01192 5.07752 5.10453 5.15291 5.23731 5.26822 5.30849 5.33867 5.37648 5.47040 5.49398 5.56970 5.64904 5.70252 5.77369 5.86343 5.87250 5.94853 6.22710 6.28268 6.39569 6.41710 6.92349 7.44131 8.96501 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.023490 B = 0.003723 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.719906 B = 7519.348618 C = 7744.001186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.062 3.938 3 C -0.183 4.183 4 N -0.521 5.521 5 C 0.050 3.950 6 C -0.063 4.063 7 H 0.050 0.950 8 C -0.124 4.124 9 C 0.036 3.964 10 C -0.526 4.526 11 H 0.058 0.942 12 C -0.001 4.001 13 N -0.935 5.935 14 Si 0.958 3.042 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.265 1.265 18 C 0.112 3.888 19 H 0.061 0.939 20 C -0.151 4.151 21 C -0.060 4.060 22 C -0.130 4.130 23 C -0.125 4.125 24 C -0.131 4.131 25 C -0.133 4.133 26 C -0.103 4.103 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.039 0.961 38 H 0.057 0.943 39 H -0.012 1.012 40 H -0.014 1.014 41 H 0.261 0.739 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.128 0.872 46 H 0.140 0.860 47 H 0.137 0.863 48 H 0.127 0.873 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.728 10.246 4.246 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.046 4.046 3 C -0.242 4.242 4 N -0.245 5.245 5 C -0.078 4.078 6 C -0.082 4.082 7 H 0.068 0.932 8 C -0.181 4.181 9 C -0.002 4.002 10 C -0.564 4.564 11 H 0.076 0.924 12 C -0.198 4.198 13 N -0.576 5.576 14 Si 0.783 3.217 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.189 1.189 18 C 0.004 3.996 19 H 0.079 0.921 20 C -0.208 4.208 21 C -0.061 4.061 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.149 4.149 25 C -0.151 4.151 26 C -0.122 4.122 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.006 0.994 40 H 0.005 0.995 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.146 0.854 46 H 0.157 0.843 47 H 0.155 0.845 48 H 0.145 0.855 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -20.757 9.775 4.285 23.340 hybrid contribution 1.325 -0.170 -0.398 1.394 sum -19.432 9.605 3.888 22.022 Atomic orbital electron populations 1.22130 0.93794 1.02144 1.01748 1.22027 0.96135 0.92641 0.93776 1.22428 1.00937 0.98053 1.02734 1.62228 1.10663 1.50045 1.01528 1.22498 0.87427 0.96670 1.01157 1.20916 0.95441 0.96300 0.95594 0.93192 1.21778 0.99927 1.00146 0.96220 1.18995 0.91900 0.94896 0.94407 1.21625 0.93201 1.04798 1.36744 0.92394 1.25907 0.96643 1.01045 0.96218 1.70099 1.01136 1.39625 1.46715 0.85556 0.77864 0.79793 0.78511 1.19939 1.20925 1.18910 1.20657 0.91734 0.97020 0.90208 0.92091 1.22089 0.99515 1.01830 0.97344 1.19677 0.94307 0.93752 0.98343 1.21146 0.93951 0.98793 1.00913 1.21316 0.95276 0.97476 1.00172 1.21362 1.00422 0.93011 1.00073 1.21351 0.93612 0.99956 1.00139 1.20990 0.95501 0.96833 0.98842 0.91519 0.92401 0.92703 0.89661 0.93561 0.91074 0.91794 0.94596 0.90357 0.93597 0.94195 0.92403 0.99412 0.99517 0.93015 0.91940 0.90853 0.92766 0.85373 0.84267 0.84523 0.85500 0.87147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 7.76 71.98 0.56 -2.64 16 2 C 0.06 1.59 2.70 44.92 0.12 1.71 16 3 C -0.18 -4.20 8.63 71.98 0.62 -3.58 16 4 N -0.52 -14.73 3.69 -850.29 -3.14 -17.87 16 5 C 0.05 1.70 4.25 86.30 0.37 2.07 16 6 C -0.06 -2.63 2.53 -10.79 -0.03 -2.66 16 7 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 8 C -0.12 -4.71 7.69 71.98 0.55 -4.16 16 9 C 0.04 1.88 4.44 29.85 0.13 2.02 16 10 C -0.53 -30.05 8.08 25.60 0.21 -29.84 16 11 H 0.06 3.22 7.31 -2.91 -0.02 3.20 16 12 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 13 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 14 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 15 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 16 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 17 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 18 C 0.11 2.73 2.14 44.17 0.09 2.82 16 19 H 0.06 1.41 5.30 -2.39 -0.01 1.39 16 20 C -0.15 -3.81 8.39 71.98 0.60 -3.20 16 21 C -0.06 -1.35 2.46 -19.87 -0.05 -1.40 16 22 C -0.13 -2.45 8.26 22.27 0.18 -2.27 16 23 C -0.12 -2.08 10.05 22.27 0.22 -1.85 16 24 C -0.13 -2.26 10.05 22.27 0.22 -2.03 16 25 C -0.13 -2.70 10.05 22.27 0.22 -2.48 16 26 C -0.10 -2.48 7.33 22.27 0.16 -2.31 16 27 H 0.07 1.44 4.90 -2.39 -0.01 1.43 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 1.37 6.45 -2.39 -0.02 1.35 16 30 H 0.09 2.41 4.31 -2.39 -0.01 2.40 16 31 H 0.05 1.19 6.39 -2.39 -0.02 1.17 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.35 5.85 -2.39 -0.01 1.34 16 34 H 0.04 1.24 5.67 -2.39 -0.01 1.23 16 35 H 0.08 2.74 4.48 -2.39 -0.01 2.73 16 36 H 0.05 1.62 7.01 -2.38 -0.02 1.60 16 37 H 0.04 1.70 6.64 -2.39 -0.02 1.69 16 38 H 0.06 1.96 7.13 -2.38 -0.02 1.94 16 39 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 40 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 41 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.06 1.69 5.76 -2.39 -0.01 1.68 16 43 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.05 1.51 8.13 -2.38 -0.02 1.49 16 45 H 0.13 2.03 8.01 -2.91 -0.02 2.00 16 46 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 48 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 49 H 0.11 3.06 7.84 -2.91 -0.02 3.04 16 Total: -1.00 -63.26 360.57 4.75 -58.51 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.91 Total: 18.92 kcal Atomic # 6 Polarization: -54.06 SS G_CDS: 4.66 Total: -49.39 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -2.85 Total: -75.06 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -63.26 4.75 -58.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602671400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.243 kcal (2) G-P(sol) polarization free energy of solvation -63.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds