Wall clock time and date at job start Tue Mar 31 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47457 * 2 1 4 4 H 1.09003 * 109.46991 * 54.48446 * 3 2 1 5 5 C 1.53006 * 109.46961 * 294.49224 * 3 2 1 6 6 C 1.52999 * 109.47195 * 174.99783 * 5 3 2 7 7 C 1.50703 * 109.46898 * 179.97438 * 6 5 3 8 8 C 1.38238 * 119.99859 * 269.72707 * 7 6 5 9 9 C 1.38230 * 119.99530 * 179.76906 * 8 7 6 10 10 C 1.38241 * 120.00295 * 0.50440 * 9 8 7 11 11 C 1.38239 * 119.99856 * 359.75043 * 10 9 8 12 12 C 1.38234 * 119.99714 * 90.00425 * 7 6 5 13 13 N 1.46894 * 109.47627 * 174.49062 * 3 2 1 14 14 C 1.46901 * 111.00115 * 273.84766 * 13 3 2 15 15 C 1.53000 * 109.47371 * 173.74834 * 14 13 3 16 16 H 1.09002 * 109.46783 * 305.00087 * 15 14 13 17 17 C 1.53002 * 109.46969 * 64.99883 * 15 14 13 18 18 C 1.52994 * 109.47224 * 184.99903 * 15 14 13 19 19 C 1.50703 * 109.47214 * 175.00208 * 18 15 14 20 20 H 1.08002 * 120.00002 * 359.97438 * 19 18 15 21 21 C 1.37873 * 120.00065 * 179.97438 * 19 18 15 22 22 N 1.31514 * 120.00021 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00135 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47350 * 89.99933 * 23 21 19 25 25 H 1.48502 * 109.47776 * 210.00421 * 23 21 19 26 26 H 1.48507 * 109.47302 * 330.00374 * 23 21 19 27 27 H 1.08997 * 109.47110 * 298.83393 * 1 2 3 28 28 H 1.08996 * 109.47246 * 178.82808 * 1 2 3 29 29 H 1.08998 * 109.47020 * 58.83280 * 1 2 3 30 30 H 1.09001 * 109.47125 * 119.99587 * 2 1 3 31 31 H 1.08999 * 109.47317 * 239.99564 * 2 1 3 32 32 H 1.09004 * 109.47082 * 294.99826 * 5 3 2 33 33 H 1.09001 * 109.47237 * 54.99641 * 5 3 2 34 34 H 1.08995 * 109.47266 * 299.99800 * 6 5 3 35 35 H 1.09001 * 109.47144 * 59.99801 * 6 5 3 36 36 H 1.07995 * 120.00216 * 359.97438 * 8 7 6 37 37 H 1.07996 * 120.00171 * 180.23085 * 9 8 7 38 38 H 1.08000 * 119.99974 * 179.72228 * 10 9 8 39 39 H 1.07994 * 119.99817 * 179.97438 * 11 10 9 40 40 H 1.07998 * 120.00440 * 359.97438 * 12 7 6 41 41 H 1.00903 * 111.00025 * 149.89126 * 13 3 2 42 42 H 1.09001 * 109.47188 * 293.75071 * 14 13 3 43 43 H 1.09001 * 109.47215 * 53.74775 * 14 13 3 44 44 H 1.09003 * 109.47252 * 179.97438 * 17 15 14 45 45 H 1.09004 * 109.47089 * 300.00259 * 17 15 14 46 46 H 1.09004 * 109.46983 * 59.99960 * 17 15 14 47 47 H 1.09000 * 109.47148 * 294.99886 * 18 15 14 48 48 H 1.08998 * 109.47094 * 55.00176 * 18 15 14 49 49 H 0.97005 * 120.00003 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5983 1.9840 0.8365 5 6 1.6462 2.1226 -1.3128 6 6 2.0459 3.5986 -1.2623 7 6 1.6586 4.2684 -2.5556 8 6 2.5529 4.3065 -3.6091 9 6 2.1958 4.9167 -4.7969 10 6 0.9483 5.4978 -4.9278 11 6 0.0560 5.4642 -3.8725 12 6 0.4112 4.8495 -2.6864 13 7 3.5029 1.4446 0.1330 14 6 3.9033 1.3972 1.5456 15 6 5.4226 1.2438 1.6403 16 1 5.7357 0.3691 1.0702 17 6 6.0978 2.4927 1.0699 18 6 5.8273 1.0694 3.1054 19 6 7.3069 0.7959 3.1888 20 1 7.8994 0.7506 2.2869 21 6 7.9043 0.6036 4.4164 22 7 7.1828 0.6582 5.5146 23 14 9.7382 0.2639 4.5197 24 1 10.4735 1.5484 4.6411 25 1 10.0191 -0.5814 5.7079 26 1 10.1803 -0.4452 3.2921 27 1 -0.3633 0.4956 0.9002 28 1 -0.3633 -1.0274 -0.0210 29 1 -0.3633 0.5318 -0.8793 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 2.1587 1.6355 -2.1424 33 1 0.5684 2.0427 -1.4543 34 1 1.5334 4.0857 -0.4328 35 1 3.1238 3.6785 -1.1208 36 1 3.5292 3.8568 -3.5052 37 1 2.8929 4.9433 -5.6213 38 1 0.6710 5.9784 -5.8544 39 1 -0.9184 5.9185 -3.9746 40 1 -0.2860 4.8232 -1.8620 41 1 3.9070 2.2445 -0.3308 42 1 3.5997 2.3198 2.0404 43 1 3.4215 0.5488 2.0315 44 1 7.1802 2.3837 1.1378 45 1 5.8095 2.6170 0.0261 46 1 5.7847 3.3675 1.6400 47 1 5.5944 1.9799 3.6575 48 1 5.2782 0.2324 3.5368 49 1 7.6032 0.5233 6.3783 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602719299.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:20 Heat of formation + Delta-G solvation = -17.468702 kcal Electronic energy + Delta-G solvation = -22602.285505 eV Core-core repulsion = 19527.349712 eV Total energy + Delta-G solvation = -3074.935793 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.60194 -38.03911 -35.51926 -33.44060 -32.65834 -31.23139 -31.08479 -29.42195 -26.90247 -25.97699 -24.64761 -23.31537 -22.77611 -22.26536 -21.07756 -19.96199 -18.85017 -17.00964 -16.44129 -15.73760 -15.67674 -15.23399 -14.96077 -14.66040 -14.39513 -13.83861 -13.77756 -13.58024 -13.17159 -12.98760 -12.95370 -12.72576 -12.27383 -12.14359 -11.91009 -11.72683 -11.53726 -11.35112 -11.31174 -11.27082 -10.87422 -10.84028 -10.77013 -10.66421 -10.37631 -10.27088 -10.10979 -9.66487 -9.12794 -9.10299 -8.92658 -8.86249 -8.30485 -8.05565 -5.95182 -3.96094 1.15484 1.19512 3.34510 3.40833 3.44421 3.57660 4.39550 4.49720 4.52157 4.62115 4.78047 4.90405 4.91887 4.98663 5.06166 5.29115 5.34582 5.36640 5.39597 5.40622 5.52579 5.56132 5.59409 5.77995 5.79918 5.84440 5.86378 5.92278 6.00028 6.05030 6.10983 6.13305 6.25995 6.27196 6.30632 6.36518 6.40839 6.46805 6.53657 6.61518 6.80922 7.01726 7.14860 7.22102 7.46356 7.72249 7.74991 7.90252 8.05541 8.49642 9.10394 9.67151 11.16374 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.019618 B = 0.002807 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.930617 B = 9973.804358 C =10977.679216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C 0.086 3.914 4 H 0.041 0.959 5 C -0.115 4.115 6 C -0.088 4.088 7 C -0.074 4.074 8 C -0.116 4.116 9 C -0.118 4.118 10 C -0.130 4.130 11 C -0.120 4.120 12 C -0.119 4.119 13 N -0.687 5.687 14 C 0.065 3.935 15 C -0.082 4.082 16 H 0.064 0.936 17 C -0.133 4.133 18 C 0.028 3.972 19 C -0.511 4.511 20 H 0.056 0.944 21 C 0.054 3.946 22 N -0.897 5.897 23 Si 0.889 3.111 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.337 0.663 42 H 0.022 0.978 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.031 0.969 46 H 0.039 0.961 47 H 0.013 0.987 48 H 0.014 0.986 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.822 7.280 -18.444 25.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.024 4.024 4 H 0.059 0.941 5 C -0.153 4.153 6 C -0.125 4.125 7 C -0.074 4.074 8 C -0.134 4.134 9 C -0.136 4.136 10 C -0.148 4.148 11 C -0.138 4.138 12 C -0.137 4.137 13 N -0.320 5.320 14 C -0.064 4.064 15 C -0.101 4.101 16 H 0.083 0.917 17 C -0.190 4.190 18 C -0.010 4.010 19 C -0.550 4.550 20 H 0.074 0.926 21 C -0.146 4.146 22 N -0.537 5.537 23 Si 0.717 3.283 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.157 0.843 42 H 0.040 0.960 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.050 0.950 46 H 0.059 0.941 47 H 0.032 0.968 48 H 0.033 0.967 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.746 6.589 -18.340 25.054 hybrid contribution 0.804 0.773 0.508 1.226 sum -14.942 7.362 -17.832 24.402 Atomic orbital electron populations 1.21837 0.96374 1.01409 1.01471 1.21494 0.94399 0.96361 1.02812 1.21549 0.89013 0.95802 0.96012 0.94113 1.21816 1.01678 0.93510 0.98275 1.20724 1.01977 0.95627 0.94210 1.19926 0.94071 0.97545 0.95861 1.21131 0.99666 0.99582 0.93054 1.21161 0.96630 0.98205 0.97648 1.21131 0.94333 1.00442 0.98849 1.21130 0.99492 0.99655 0.93537 1.21064 0.96217 0.98608 0.97851 1.60603 1.07422 1.48431 1.15574 1.22162 0.97865 0.99487 0.86865 1.21199 0.91040 0.97612 1.00277 0.91710 1.21727 1.01884 0.97769 0.97626 1.19113 0.96105 0.96819 0.88965 1.21244 0.93772 1.47701 0.92248 0.92586 1.25022 0.97898 0.95709 0.95970 1.69969 1.35455 1.50656 0.97648 0.86637 0.85916 0.78169 0.77533 1.20782 1.21322 1.19893 0.93019 0.92870 0.92783 0.91651 0.91585 0.90960 0.91111 0.91054 0.90740 0.85865 0.86161 0.86359 0.86285 0.86218 0.84279 0.96000 0.91583 0.91989 0.95000 0.94148 0.96829 0.96737 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.71 37.16 0.36 -1.14 16 2 C -0.11 -1.34 5.65 -26.73 -0.15 -1.49 16 3 C 0.09 1.04 2.10 -67.71 -0.14 0.90 16 4 H 0.04 0.52 7.84 -51.93 -0.41 0.11 16 5 C -0.12 -1.16 4.65 -26.73 -0.12 -1.29 16 6 C -0.09 -0.87 5.18 -27.88 -0.14 -1.01 16 7 C -0.07 -0.73 5.13 -104.62 -0.54 -1.27 16 8 C -0.12 -1.13 9.70 -39.58 -0.38 -1.52 16 9 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 10 C -0.13 -1.09 10.05 -39.58 -0.40 -1.48 16 11 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 12 C -0.12 -1.10 9.70 -39.58 -0.38 -1.49 16 13 N -0.69 -9.92 6.25 -106.72 -0.67 -10.59 16 14 C 0.06 1.13 4.91 -3.82 -0.02 1.11 16 15 C -0.08 -1.70 2.55 -90.62 -0.23 -1.93 16 16 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 17 C -0.13 -2.49 8.77 37.16 0.33 -2.17 16 18 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 19 C -0.51 -14.43 8.41 -34.44 -0.29 -14.72 16 20 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 21 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 23 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.48 6.43 -51.93 -0.33 0.14 16 30 H 0.06 0.88 7.37 -51.93 -0.38 0.50 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.66 6.34 -51.93 -0.33 0.33 16 34 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.07 0.77 6.37 -51.93 -0.33 0.44 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.34 4.58 4.95 -39.29 -0.19 4.39 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 1.20 7.33 -51.93 -0.38 0.82 16 44 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 45 H 0.03 0.50 6.83 -51.93 -0.35 0.15 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 384.33 15.07 5.79 5.79 Total: -1.00 -30.08 384.33 -11.21 -41.29 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -8.92 Total: 1.40 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: -3.13 Total: -28.28 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.07 Total: -37.05 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.08 -11.21 -41.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602719299.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.824 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds