Wall clock time and date at job start Tue Mar 31 2020 06:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47457 * 2 1 4 4 H 1.09003 * 109.46991 * 54.48446 * 3 2 1 5 5 C 1.53006 * 109.46961 * 294.49224 * 3 2 1 6 6 C 1.52999 * 109.47195 * 174.99783 * 5 3 2 7 7 C 1.50703 * 109.46898 * 179.97438 * 6 5 3 8 8 C 1.38238 * 119.99859 * 269.72707 * 7 6 5 9 9 C 1.38230 * 119.99530 * 179.76906 * 8 7 6 10 10 C 1.38241 * 120.00295 * 0.50440 * 9 8 7 11 11 C 1.38239 * 119.99856 * 359.75043 * 10 9 8 12 12 C 1.38234 * 119.99714 * 90.00425 * 7 6 5 13 13 N 1.46894 * 109.47627 * 174.49062 * 3 2 1 14 14 C 1.46901 * 111.00115 * 273.84766 * 13 3 2 15 15 C 1.53000 * 109.47371 * 173.74834 * 14 13 3 16 16 H 1.09002 * 109.46783 * 305.00087 * 15 14 13 17 17 C 1.53002 * 109.46969 * 64.99883 * 15 14 13 18 18 C 1.52994 * 109.47224 * 184.99903 * 15 14 13 19 19 C 1.50703 * 109.47214 * 175.00208 * 18 15 14 20 20 H 1.08002 * 120.00002 * 359.97438 * 19 18 15 21 21 C 1.37873 * 120.00065 * 179.97438 * 19 18 15 22 22 N 1.31514 * 120.00021 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00135 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47350 * 89.99933 * 23 21 19 25 25 H 1.48502 * 109.47776 * 210.00421 * 23 21 19 26 26 H 1.48507 * 109.47302 * 330.00374 * 23 21 19 27 27 H 1.08997 * 109.47110 * 298.83393 * 1 2 3 28 28 H 1.08996 * 109.47246 * 178.82808 * 1 2 3 29 29 H 1.08998 * 109.47020 * 58.83280 * 1 2 3 30 30 H 1.09001 * 109.47125 * 119.99587 * 2 1 3 31 31 H 1.08999 * 109.47317 * 239.99564 * 2 1 3 32 32 H 1.09004 * 109.47082 * 294.99826 * 5 3 2 33 33 H 1.09001 * 109.47237 * 54.99641 * 5 3 2 34 34 H 1.08995 * 109.47266 * 299.99800 * 6 5 3 35 35 H 1.09001 * 109.47144 * 59.99801 * 6 5 3 36 36 H 1.07995 * 120.00216 * 359.97438 * 8 7 6 37 37 H 1.07996 * 120.00171 * 180.23085 * 9 8 7 38 38 H 1.08000 * 119.99974 * 179.72228 * 10 9 8 39 39 H 1.07994 * 119.99817 * 179.97438 * 11 10 9 40 40 H 1.07998 * 120.00440 * 359.97438 * 12 7 6 41 41 H 1.00903 * 111.00025 * 149.89126 * 13 3 2 42 42 H 1.09001 * 109.47188 * 293.75071 * 14 13 3 43 43 H 1.09001 * 109.47215 * 53.74775 * 14 13 3 44 44 H 1.09003 * 109.47252 * 179.97438 * 17 15 14 45 45 H 1.09004 * 109.47089 * 300.00259 * 17 15 14 46 46 H 1.09004 * 109.46983 * 59.99960 * 17 15 14 47 47 H 1.09000 * 109.47148 * 294.99886 * 18 15 14 48 48 H 1.08998 * 109.47094 * 55.00176 * 18 15 14 49 49 H 0.97005 * 120.00003 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5983 1.9840 0.8365 5 6 1.6462 2.1226 -1.3128 6 6 2.0459 3.5986 -1.2623 7 6 1.6586 4.2684 -2.5556 8 6 2.5529 4.3065 -3.6091 9 6 2.1958 4.9167 -4.7969 10 6 0.9483 5.4978 -4.9278 11 6 0.0560 5.4642 -3.8725 12 6 0.4112 4.8495 -2.6864 13 7 3.5029 1.4446 0.1330 14 6 3.9033 1.3972 1.5456 15 6 5.4226 1.2438 1.6403 16 1 5.7357 0.3691 1.0702 17 6 6.0978 2.4927 1.0699 18 6 5.8273 1.0694 3.1054 19 6 7.3069 0.7959 3.1888 20 1 7.8994 0.7506 2.2869 21 6 7.9043 0.6036 4.4164 22 7 7.1828 0.6582 5.5146 23 14 9.7382 0.2639 4.5197 24 1 10.4735 1.5484 4.6411 25 1 10.0191 -0.5814 5.7079 26 1 10.1803 -0.4452 3.2921 27 1 -0.3633 0.4956 0.9002 28 1 -0.3633 -1.0274 -0.0210 29 1 -0.3633 0.5318 -0.8793 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 2.1587 1.6355 -2.1424 33 1 0.5684 2.0427 -1.4543 34 1 1.5334 4.0857 -0.4328 35 1 3.1238 3.6785 -1.1208 36 1 3.5292 3.8568 -3.5052 37 1 2.8929 4.9433 -5.6213 38 1 0.6710 5.9784 -5.8544 39 1 -0.9184 5.9185 -3.9746 40 1 -0.2860 4.8232 -1.8620 41 1 3.9070 2.2445 -0.3308 42 1 3.5997 2.3198 2.0404 43 1 3.4215 0.5488 2.0315 44 1 7.1802 2.3837 1.1378 45 1 5.8095 2.6170 0.0261 46 1 5.7847 3.3675 1.6400 47 1 5.5944 1.9799 3.6575 48 1 5.2782 0.2324 3.5368 49 1 7.6032 0.5233 6.3783 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602719299.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:19 Heat of formation + Delta-G solvation = -31.703462 kcal Electronic energy + Delta-G solvation = -22602.902770 eV Core-core repulsion = 19527.349712 eV Total energy + Delta-G solvation = -3075.553058 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.30970 -39.14450 -37.04909 -34.72304 -34.08799 -32.65525 -31.72354 -30.31569 -28.79952 -27.17474 -26.04786 -24.14432 -24.08900 -23.41200 -21.78137 -21.03304 -20.48166 -18.53743 -17.65121 -16.90043 -16.75419 -16.41648 -15.99157 -15.85159 -15.63348 -15.17339 -14.75112 -14.45726 -14.29342 -14.19957 -14.03936 -13.77752 -13.72626 -13.33404 -13.27806 -12.93441 -12.77703 -12.65546 -12.63103 -12.39379 -12.26857 -12.14299 -11.96246 -11.81541 -11.73305 -11.54007 -11.42509 -11.30714 -11.03708 -10.85053 -10.53187 -9.78056 -9.54850 -9.27203 -8.17151 -6.26218 0.49211 0.54125 1.39974 1.41127 1.52186 2.42197 2.91468 3.16162 3.25899 3.70997 3.93469 3.99797 4.12600 4.20861 4.23360 4.27943 4.32911 4.34142 4.46372 4.50725 4.55278 4.63624 4.66037 4.70305 4.74725 4.76192 4.83379 4.90840 5.00903 5.05080 5.10511 5.16564 5.22624 5.23707 5.25636 5.28920 5.40297 5.43381 5.48706 5.49779 5.57411 5.62370 5.66992 5.77849 5.82057 5.90404 6.17083 6.18018 6.33202 6.59736 6.89807 7.41960 8.94980 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.019618 B = 0.002807 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.930617 B = 9973.804358 C =10977.679216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C 0.087 3.913 4 H 0.038 0.962 5 C -0.103 4.103 6 C -0.083 4.083 7 C -0.087 4.087 8 C -0.132 4.132 9 C -0.128 4.128 10 C -0.135 4.135 11 C -0.126 4.126 12 C -0.130 4.130 13 N -0.686 5.686 14 C 0.079 3.921 15 C -0.073 4.073 16 H 0.054 0.946 17 C -0.125 4.125 18 C 0.033 3.967 19 C -0.528 4.528 20 H 0.061 0.939 21 C -0.003 4.003 22 N -0.936 5.936 23 Si 0.961 3.039 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.264 1.264 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.125 0.875 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.344 0.656 42 H 0.021 0.979 43 H 0.053 0.947 44 H 0.044 0.956 45 H 0.065 0.935 46 H 0.039 0.961 47 H -0.011 1.011 48 H -0.015 1.015 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.135 7.979 -20.434 27.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.022 4.022 4 H 0.056 0.944 5 C -0.140 4.140 6 C -0.121 4.121 7 C -0.087 4.087 8 C -0.150 4.150 9 C -0.146 4.146 10 C -0.153 4.153 11 C -0.144 4.144 12 C -0.148 4.148 13 N -0.320 5.320 14 C -0.050 4.050 15 C -0.092 4.092 16 H 0.073 0.927 17 C -0.182 4.182 18 C -0.005 4.005 19 C -0.566 4.566 20 H 0.079 0.921 21 C -0.201 4.201 22 N -0.577 5.577 23 Si 0.786 3.214 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.188 1.188 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.143 0.857 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.148 0.852 41 H 0.165 0.835 42 H 0.039 0.961 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.084 0.916 46 H 0.058 0.942 47 H 0.007 0.993 48 H 0.003 0.997 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.065 7.293 -20.352 26.935 hybrid contribution 0.844 0.565 1.102 1.498 sum -15.222 7.858 -19.250 25.768 Atomic orbital electron populations 1.21792 0.94473 1.02137 1.02130 1.21484 0.96083 0.95879 1.01601 1.21608 0.87259 0.96219 0.97153 0.94444 1.21698 1.02313 0.93437 0.96581 1.20652 1.01543 0.95346 0.94521 1.19971 0.94630 0.98280 0.95806 1.21295 0.99950 1.00219 0.93584 1.21428 0.97318 0.97969 0.97844 1.21457 0.94083 1.00065 0.99712 1.21438 1.00445 0.99294 0.93249 1.21279 0.96227 0.98686 0.98638 1.60529 1.09270 1.48920 1.13307 1.21834 0.95437 0.98924 0.88820 1.20997 0.93492 0.98272 0.96482 0.92710 1.21630 1.00466 0.96526 0.99584 1.19005 0.95092 0.94278 0.92095 1.21639 0.94956 1.47406 0.92569 0.92123 1.25961 1.03063 0.95436 0.95594 1.70106 1.37657 1.51652 0.98275 0.85505 0.79731 0.78343 0.77830 1.19803 1.20933 1.18809 0.92994 0.92213 0.91396 0.93870 0.91774 0.91314 0.89869 0.90962 0.91366 0.85677 0.84648 0.84320 0.84326 0.85213 0.83511 0.96106 0.92799 0.93682 0.91594 0.94152 0.99268 0.99699 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.71 71.98 0.70 -1.97 16 2 C -0.11 -2.61 5.65 30.59 0.17 -2.43 16 3 C 0.09 2.03 2.10 44.92 0.09 2.12 16 4 H 0.04 0.92 7.84 -2.39 -0.02 0.90 16 5 C -0.10 -1.91 4.65 30.60 0.14 -1.77 16 6 C -0.08 -1.53 5.18 29.85 0.15 -1.37 16 7 C -0.09 -1.60 5.13 -19.86 -0.10 -1.70 16 8 C -0.13 -2.41 9.70 22.27 0.22 -2.20 16 9 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 10 C -0.14 -1.97 10.05 22.27 0.22 -1.75 16 11 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 12 C -0.13 -2.18 9.70 22.27 0.22 -1.96 16 13 N -0.69 -19.34 6.25 -491.57 -3.07 -22.42 16 14 C 0.08 2.79 4.91 86.30 0.42 3.21 16 15 C -0.07 -3.07 2.55 -10.79 -0.03 -3.10 16 16 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 17 C -0.12 -4.61 8.77 71.98 0.63 -3.98 16 18 C 0.03 1.76 4.45 29.85 0.13 1.90 16 19 C -0.53 -30.30 8.41 25.60 0.22 -30.08 16 20 H 0.06 3.35 7.06 -2.91 -0.02 3.33 16 21 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 22 N -0.94 -57.98 13.29 21.45 0.28 -57.70 16 23 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 26 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.04 6.43 -2.39 -0.02 1.03 16 30 H 0.04 1.18 7.37 -2.39 -0.02 1.16 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.37 6.34 -2.39 -0.02 1.36 16 34 H 0.07 1.30 8.09 -2.39 -0.02 1.28 16 35 H 0.07 1.32 6.37 -2.39 -0.02 1.31 16 36 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 38 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 39 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.13 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.34 8.87 4.95 -89.69 -0.44 8.43 16 42 H 0.02 0.73 8.14 -2.39 -0.02 0.72 16 43 H 0.05 2.02 7.33 -2.39 -0.02 2.00 16 44 H 0.04 1.80 6.95 -2.39 -0.02 1.78 16 45 H 0.07 1.97 6.83 -2.39 -0.02 1.96 16 46 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 47 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 48 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 49 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -65.27 384.33 3.78 -61.48 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.44 Total: 19.85 kcal Atomic # 6 Polarization: -52.39 SS G_CDS: 4.10 Total: -48.29 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -2.79 Total: -80.11 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -65.27 3.78 -61.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602719299.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.779 kcal (2) G-P(sol) polarization free energy of solvation -65.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds