Wall clock time and date at job start Tue Mar 31 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47392 * 2 1 4 4 H 1.08998 * 109.47178 * 55.65318 * 3 2 1 5 5 C 1.52998 * 109.47177 * 175.65643 * 3 2 1 6 6 C 1.53003 * 109.47246 * 184.99622 * 5 3 2 7 7 C 1.50701 * 109.47329 * 179.97438 * 6 5 3 8 8 C 1.38239 * 119.99494 * 269.72737 * 7 6 5 9 9 C 1.38236 * 119.99081 * 179.76473 * 8 7 6 10 10 C 1.38235 * 120.00339 * 0.51222 * 9 8 7 11 11 C 1.38234 * 119.99806 * 359.74068 * 10 9 8 12 12 C 1.38229 * 119.99885 * 90.00114 * 7 6 5 13 13 N 1.46907 * 109.46994 * 295.65305 * 3 2 1 14 14 C 1.46900 * 111.00113 * 294.56879 * 13 3 2 15 15 C 1.52996 * 109.46895 * 174.42845 * 14 13 3 16 16 H 1.09003 * 109.47163 * 55.00464 * 15 14 13 17 17 C 1.52994 * 109.47494 * 294.99957 * 15 14 13 18 18 C 1.53009 * 109.47001 * 175.00017 * 15 14 13 19 19 C 1.50697 * 109.47256 * 185.00232 * 18 15 14 20 20 H 1.08005 * 119.99783 * 359.97438 * 19 18 15 21 21 C 1.37875 * 120.00051 * 180.02562 * 19 18 15 22 22 N 1.31514 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99955 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47004 * 89.99604 * 23 21 19 25 25 H 1.48500 * 109.46901 * 209.99282 * 23 21 19 26 26 H 1.48497 * 109.47236 * 329.99718 * 23 21 19 27 27 H 1.08997 * 109.47467 * 300.33235 * 1 2 3 28 28 H 1.08999 * 109.46713 * 60.33028 * 1 2 3 29 29 H 1.08998 * 109.46988 * 180.32961 * 1 2 3 30 30 H 1.08999 * 109.47348 * 239.99721 * 2 1 3 31 31 H 1.08999 * 109.47178 * 120.00013 * 2 1 3 32 32 H 1.08996 * 109.47305 * 304.99851 * 5 3 2 33 33 H 1.08997 * 109.47114 * 65.00082 * 5 3 2 34 34 H 1.08996 * 109.47155 * 300.00320 * 6 5 3 35 35 H 1.09006 * 109.46889 * 59.99633 * 6 5 3 36 36 H 1.07990 * 120.00143 * 359.97438 * 8 7 6 37 37 H 1.08002 * 119.99633 * 180.23083 * 9 8 7 38 38 H 1.08004 * 119.99763 * 179.72388 * 10 9 8 39 39 H 1.08005 * 119.99746 * 179.97438 * 11 10 9 40 40 H 1.07999 * 120.00072 * 0.02562 * 12 7 6 41 41 H 1.00896 * 110.99947 * 170.61525 * 13 3 2 42 42 H 1.08994 * 109.46998 * 294.43531 * 14 13 3 43 43 H 1.09004 * 109.47174 * 54.43241 * 14 13 3 44 44 H 1.09003 * 109.47329 * 300.00405 * 17 15 14 45 45 H 1.08997 * 109.47321 * 60.00296 * 17 15 14 46 46 H 1.08999 * 109.47461 * 180.02562 * 17 15 14 47 47 H 1.09004 * 109.46907 * 305.00426 * 18 15 14 48 48 H 1.09005 * 109.46871 * 65.00318 * 18 15 14 49 49 H 0.96994 * 120.00392 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6145 1.9783 0.8485 5 6 3.5661 1.4438 0.1092 6 6 4.0672 2.8839 0.2347 7 6 5.5703 2.8852 0.3429 8 6 6.1738 2.8176 1.5848 9 6 7.5527 2.8138 1.6837 10 6 8.3278 2.8885 0.5415 11 6 7.7242 2.9614 -0.6999 12 6 6.3454 2.9598 -0.7992 13 7 1.6379 2.1040 -1.2485 14 6 2.2970 1.4868 -2.4073 15 6 1.7508 2.1070 -3.6948 16 1 1.8675 3.1901 -3.6543 17 6 0.2681 1.7588 -3.8396 18 6 2.5238 1.5554 -4.8945 19 6 2.0705 2.2559 -6.1494 20 1 1.3070 3.0180 -6.0966 21 6 2.6295 1.9231 -7.3650 22 7 3.5588 0.9946 -7.4293 23 14 2.0670 2.7909 -8.9206 24 1 2.9051 3.9960 -9.1457 25 1 2.2031 1.8702 -10.0778 26 1 0.6460 3.1964 -8.7750 27 1 -0.3634 0.5190 0.8869 28 1 -0.3633 0.5087 -0.8929 29 1 -0.3633 -1.0276 0.0059 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8679 0.8761 0.9894 33 1 3.9946 0.9864 -0.7825 34 1 3.7655 3.4516 -0.6455 35 1 3.6386 3.3414 1.1264 36 1 5.5682 2.7642 2.4773 37 1 8.0243 2.7572 2.6536 38 1 9.4051 2.8900 0.6192 39 1 8.3298 3.0201 -1.5922 40 1 5.8738 3.0175 -1.7691 41 1 1.8270 3.0943 -1.2101 42 1 3.3717 1.6591 -2.3483 43 1 2.1005 0.4146 -2.4087 44 1 0.1515 0.6758 -3.8801 45 1 -0.2826 2.1518 -2.9850 46 1 -0.1209 2.2003 -4.7571 47 1 3.5906 1.7253 -4.7487 48 1 2.3356 0.4857 -4.9873 49 1 3.9523 0.7608 -8.2844 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602719303.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:30 Heat of formation + Delta-G solvation = -14.874133 kcal Electronic energy + Delta-G solvation = -23166.628448 eV Core-core repulsion = 20091.805164 eV Total energy + Delta-G solvation = -3074.823284 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.52422 -38.23432 -35.16940 -33.42866 -32.41160 -31.04406 -30.93058 -29.32664 -26.82310 -25.96338 -25.05191 -22.78070 -22.62544 -22.61675 -20.79792 -19.62288 -19.03724 -16.84974 -16.31834 -15.89698 -15.60945 -15.18076 -14.67516 -14.47055 -14.15687 -14.01970 -13.48773 -13.39756 -13.33206 -13.06413 -12.80410 -12.52827 -12.29532 -12.05920 -11.71328 -11.65650 -11.42807 -11.31218 -11.11758 -10.89801 -10.82281 -10.81555 -10.65629 -10.52183 -10.47152 -10.22749 -10.12357 -9.62247 -9.08678 -8.97878 -8.92169 -8.74485 -8.30425 -7.97270 -5.95312 -3.96174 1.29453 1.34345 3.34166 3.40612 3.44107 3.71821 4.44190 4.52655 4.67487 4.75491 4.88309 4.96120 5.04028 5.08575 5.26561 5.34398 5.40537 5.45705 5.47419 5.51353 5.59187 5.66791 5.74710 5.79753 5.92685 5.94552 6.00577 6.03908 6.07984 6.14681 6.21017 6.24164 6.39848 6.41226 6.47165 6.49093 6.57126 6.61181 6.65457 6.76069 6.95700 7.08133 7.23523 7.25784 7.46569 7.71153 7.75538 7.89755 8.05390 8.49899 9.10403 9.67162 11.16174 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011541 B = 0.004091 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.594244 B = 6843.071438 C = 8835.549497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C 0.089 3.911 4 H 0.075 0.925 5 C -0.151 4.151 6 C -0.081 4.081 7 C -0.076 4.076 8 C -0.121 4.121 9 C -0.123 4.123 10 C -0.129 4.129 11 C -0.116 4.116 12 C -0.114 4.114 13 N -0.677 5.677 14 C 0.059 3.941 15 C -0.081 4.081 16 H 0.051 0.949 17 C -0.121 4.121 18 C 0.028 3.972 19 C -0.511 4.511 20 H 0.056 0.944 21 C 0.055 3.945 22 N -0.897 5.897 23 Si 0.888 3.112 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.335 0.665 42 H 0.027 0.973 43 H 0.068 0.932 44 H 0.037 0.963 45 H 0.042 0.958 46 H 0.051 0.949 47 H 0.011 0.989 48 H 0.014 0.986 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.306 1.922 19.902 20.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.022 4.022 4 H 0.093 0.907 5 C -0.190 4.190 6 C -0.119 4.119 7 C -0.076 4.076 8 C -0.139 4.139 9 C -0.141 4.141 10 C -0.147 4.147 11 C -0.134 4.134 12 C -0.132 4.132 13 N -0.307 5.307 14 C -0.069 4.069 15 C -0.100 4.100 16 H 0.070 0.930 17 C -0.179 4.179 18 C -0.009 4.009 19 C -0.550 4.550 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.537 5.537 23 Si 0.716 3.284 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.153 0.847 42 H 0.045 0.955 43 H 0.086 0.914 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.029 0.971 48 H 0.033 0.967 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.819 1.452 19.706 19.959 hybrid contribution 0.911 0.707 -0.879 1.450 sum 3.730 2.159 18.826 19.313 Atomic orbital electron populations 1.21638 0.95302 1.00511 1.02481 1.21560 0.96770 0.95560 1.01468 1.21610 0.91650 0.95770 0.93159 0.90719 1.22359 0.97890 0.95904 1.02873 1.20627 0.90857 0.97763 1.02635 1.19926 0.95790 0.98794 0.93130 1.21015 0.94704 1.01198 0.96994 1.21102 0.93932 1.00678 0.98347 1.21128 0.99690 1.01159 0.92762 1.21205 0.94940 0.99601 0.97670 1.21203 0.93852 0.99582 0.98541 1.60658 1.61432 1.06953 1.01673 1.22210 0.95277 0.99344 0.90092 1.21169 0.96111 0.98903 0.93788 0.93043 1.21575 0.96113 1.00066 1.00116 1.19109 0.94602 0.96219 0.91004 1.21248 1.21166 1.20582 0.91975 0.92622 1.25010 0.95210 0.95258 0.99027 1.69964 1.27260 1.31213 1.25264 0.86656 0.79116 0.79427 0.83178 1.20793 1.21327 1.19890 0.93647 0.91016 0.93882 0.91649 0.92614 0.91900 0.90877 0.90893 0.91190 0.86385 0.86395 0.86371 0.86000 0.85696 0.84692 0.95502 0.91410 0.94356 0.93892 0.92992 0.97082 0.96715 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.79 37.16 0.36 -1.29 16 2 C -0.12 -1.35 5.31 -26.73 -0.14 -1.49 16 3 C 0.09 1.01 2.53 -67.71 -0.17 0.84 16 4 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 5 C -0.15 -1.70 4.30 -26.73 -0.11 -1.82 16 6 C -0.08 -0.88 5.12 -27.88 -0.14 -1.02 16 7 C -0.08 -0.90 5.13 -104.62 -0.54 -1.43 16 8 C -0.12 -1.29 9.70 -39.58 -0.38 -1.67 16 9 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 10 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 11 C -0.12 -1.36 10.05 -39.59 -0.40 -1.75 16 12 C -0.11 -1.44 9.70 -39.59 -0.38 -1.83 16 13 N -0.68 -9.09 5.17 -106.73 -0.55 -9.64 16 14 C 0.06 0.98 4.18 -3.83 -0.02 0.96 16 15 C -0.08 -1.62 2.52 -90.62 -0.23 -1.85 16 16 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 17 C -0.12 -2.35 8.89 37.15 0.33 -2.02 16 18 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 19 C -0.51 -14.34 8.41 -34.44 -0.29 -14.63 16 20 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 21 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 22 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 23 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.96 7.74 -51.93 -0.40 0.56 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.87 6.24 -51.93 -0.32 0.55 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.98 6.17 -51.93 -0.32 0.66 16 34 H 0.07 0.84 6.95 -51.93 -0.36 0.48 16 35 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 39 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 40 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 41 H 0.34 4.30 7.60 -39.29 -0.30 4.01 16 42 H 0.03 0.46 6.45 -51.93 -0.34 0.12 16 43 H 0.07 1.18 6.13 -51.93 -0.32 0.86 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 46 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 47 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -29.62 383.94 -11.15 -40.77 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -8.97 Total: 2.92 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: -3.13 Total: -30.30 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.18 Total: -35.95 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.62 -11.15 -40.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602719303.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.893 kcal (2) G-P(sol) polarization free energy of solvation -29.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds