Wall clock time and date at job start Tue Mar 31 2020 06:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47392 * 2 1 4 4 H 1.08998 * 109.47178 * 55.65318 * 3 2 1 5 5 C 1.52998 * 109.47177 * 175.65643 * 3 2 1 6 6 C 1.53003 * 109.47246 * 184.99622 * 5 3 2 7 7 C 1.50701 * 109.47329 * 179.97438 * 6 5 3 8 8 C 1.38239 * 119.99494 * 269.72737 * 7 6 5 9 9 C 1.38236 * 119.99081 * 179.76473 * 8 7 6 10 10 C 1.38235 * 120.00339 * 0.51222 * 9 8 7 11 11 C 1.38234 * 119.99806 * 359.74068 * 10 9 8 12 12 C 1.38229 * 119.99885 * 90.00114 * 7 6 5 13 13 N 1.46907 * 109.46994 * 295.65305 * 3 2 1 14 14 C 1.46900 * 111.00113 * 294.56879 * 13 3 2 15 15 C 1.52996 * 109.46895 * 174.42845 * 14 13 3 16 16 H 1.09003 * 109.47163 * 55.00464 * 15 14 13 17 17 C 1.52994 * 109.47494 * 294.99957 * 15 14 13 18 18 C 1.53009 * 109.47001 * 175.00017 * 15 14 13 19 19 C 1.50697 * 109.47256 * 185.00232 * 18 15 14 20 20 H 1.08005 * 119.99783 * 359.97438 * 19 18 15 21 21 C 1.37875 * 120.00051 * 180.02562 * 19 18 15 22 22 N 1.31514 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99955 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47004 * 89.99604 * 23 21 19 25 25 H 1.48500 * 109.46901 * 209.99282 * 23 21 19 26 26 H 1.48497 * 109.47236 * 329.99718 * 23 21 19 27 27 H 1.08997 * 109.47467 * 300.33235 * 1 2 3 28 28 H 1.08999 * 109.46713 * 60.33028 * 1 2 3 29 29 H 1.08998 * 109.46988 * 180.32961 * 1 2 3 30 30 H 1.08999 * 109.47348 * 239.99721 * 2 1 3 31 31 H 1.08999 * 109.47178 * 120.00013 * 2 1 3 32 32 H 1.08996 * 109.47305 * 304.99851 * 5 3 2 33 33 H 1.08997 * 109.47114 * 65.00082 * 5 3 2 34 34 H 1.08996 * 109.47155 * 300.00320 * 6 5 3 35 35 H 1.09006 * 109.46889 * 59.99633 * 6 5 3 36 36 H 1.07990 * 120.00143 * 359.97438 * 8 7 6 37 37 H 1.08002 * 119.99633 * 180.23083 * 9 8 7 38 38 H 1.08004 * 119.99763 * 179.72388 * 10 9 8 39 39 H 1.08005 * 119.99746 * 179.97438 * 11 10 9 40 40 H 1.07999 * 120.00072 * 0.02562 * 12 7 6 41 41 H 1.00896 * 110.99947 * 170.61525 * 13 3 2 42 42 H 1.08994 * 109.46998 * 294.43531 * 14 13 3 43 43 H 1.09004 * 109.47174 * 54.43241 * 14 13 3 44 44 H 1.09003 * 109.47329 * 300.00405 * 17 15 14 45 45 H 1.08997 * 109.47321 * 60.00296 * 17 15 14 46 46 H 1.08999 * 109.47461 * 180.02562 * 17 15 14 47 47 H 1.09004 * 109.46907 * 305.00426 * 18 15 14 48 48 H 1.09005 * 109.46871 * 65.00318 * 18 15 14 49 49 H 0.96994 * 120.00392 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6145 1.9783 0.8485 5 6 3.5661 1.4438 0.1092 6 6 4.0672 2.8839 0.2347 7 6 5.5703 2.8852 0.3429 8 6 6.1738 2.8176 1.5848 9 6 7.5527 2.8138 1.6837 10 6 8.3278 2.8885 0.5415 11 6 7.7242 2.9614 -0.6999 12 6 6.3454 2.9598 -0.7992 13 7 1.6379 2.1040 -1.2485 14 6 2.2970 1.4868 -2.4073 15 6 1.7508 2.1070 -3.6948 16 1 1.8675 3.1901 -3.6543 17 6 0.2681 1.7588 -3.8396 18 6 2.5238 1.5554 -4.8945 19 6 2.0705 2.2559 -6.1494 20 1 1.3070 3.0180 -6.0966 21 6 2.6295 1.9231 -7.3650 22 7 3.5588 0.9946 -7.4293 23 14 2.0670 2.7909 -8.9206 24 1 2.9051 3.9960 -9.1457 25 1 2.2031 1.8702 -10.0778 26 1 0.6460 3.1964 -8.7750 27 1 -0.3634 0.5190 0.8869 28 1 -0.3633 0.5087 -0.8929 29 1 -0.3633 -1.0276 0.0059 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8679 0.8761 0.9894 33 1 3.9946 0.9864 -0.7825 34 1 3.7655 3.4516 -0.6455 35 1 3.6386 3.3414 1.1264 36 1 5.5682 2.7642 2.4773 37 1 8.0243 2.7572 2.6536 38 1 9.4051 2.8900 0.6192 39 1 8.3298 3.0201 -1.5922 40 1 5.8738 3.0175 -1.7691 41 1 1.8270 3.0943 -1.2101 42 1 3.3717 1.6591 -2.3483 43 1 2.1005 0.4146 -2.4087 44 1 0.1515 0.6758 -3.8801 45 1 -0.2826 2.1518 -2.9850 46 1 -0.1209 2.2003 -4.7571 47 1 3.5906 1.7253 -4.7487 48 1 2.3356 0.4857 -4.9873 49 1 3.9523 0.7608 -8.2844 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602719303.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:29 Heat of formation + Delta-G solvation = -28.694253 kcal Electronic energy + Delta-G solvation = -23167.227733 eV Core-core repulsion = 20091.805164 eV Total energy + Delta-G solvation = -3075.422569 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.41525 -39.32709 -36.80566 -34.58000 -34.13617 -32.30443 -31.77275 -30.38128 -28.74189 -27.16085 -26.35732 -24.61064 -23.55834 -23.46824 -21.66075 -21.08988 -20.33179 -18.45384 -17.68360 -17.07788 -16.63828 -16.49111 -16.05219 -15.74400 -15.52108 -15.04776 -14.68343 -14.49699 -14.32506 -14.17046 -14.14856 -13.84266 -13.63399 -13.31988 -13.13035 -13.06689 -12.77975 -12.61173 -12.59269 -12.24895 -12.22288 -12.01678 -11.96770 -11.78790 -11.64395 -11.57975 -11.40094 -11.29679 -11.00582 -10.86083 -10.53325 -9.83815 -9.61819 -9.12977 -8.17289 -6.26436 0.44624 0.48307 1.39255 1.40288 1.51421 2.41781 2.86346 3.16037 3.37138 3.75557 3.91033 3.97498 4.14667 4.17833 4.20856 4.27062 4.34017 4.42362 4.47470 4.58077 4.58535 4.63112 4.66316 4.71249 4.77789 4.85838 4.94406 5.00651 5.03563 5.08347 5.13308 5.15696 5.20755 5.24663 5.31047 5.33432 5.47698 5.50472 5.53047 5.57351 5.59915 5.61972 5.63307 5.74230 5.83937 5.90362 6.12841 6.19938 6.34523 6.63957 6.89857 7.41907 8.94747 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011541 B = 0.004091 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.594244 B = 6843.071438 C = 8835.549497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 C 0.093 3.907 4 H 0.099 0.901 5 C -0.142 4.142 6 C -0.076 4.076 7 C -0.088 4.088 8 C -0.124 4.124 9 C -0.123 4.123 10 C -0.134 4.134 11 C -0.133 4.133 12 C -0.141 4.141 13 N -0.672 5.672 14 C 0.079 3.921 15 C -0.072 4.072 16 H 0.051 0.949 17 C -0.110 4.110 18 C 0.035 3.965 19 C -0.528 4.528 20 H 0.060 0.940 21 C -0.002 4.002 22 N -0.936 5.936 23 Si 0.959 3.041 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.263 1.263 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.125 0.875 40 H 0.104 0.896 41 H 0.342 0.658 42 H 0.016 0.984 43 H 0.058 0.942 44 H 0.031 0.969 45 H 0.069 0.931 46 H 0.033 0.967 47 H -0.018 1.018 48 H -0.014 1.014 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.608 2.884 22.149 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C -0.017 4.017 4 H 0.117 0.883 5 C -0.181 4.181 6 C -0.113 4.113 7 C -0.088 4.088 8 C -0.142 4.142 9 C -0.141 4.141 10 C -0.152 4.152 11 C -0.151 4.151 12 C -0.159 4.159 13 N -0.302 5.302 14 C -0.050 4.050 15 C -0.091 4.091 16 H 0.069 0.931 17 C -0.167 4.167 18 C -0.003 4.003 19 C -0.566 4.566 20 H 0.078 0.922 21 C -0.199 4.199 22 N -0.577 5.577 23 Si 0.784 3.216 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.187 1.187 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.160 0.840 37 H 0.165 0.835 38 H 0.158 0.842 39 H 0.143 0.857 40 H 0.122 0.878 41 H 0.160 0.840 42 H 0.035 0.965 43 H 0.077 0.923 44 H 0.050 0.950 45 H 0.088 0.912 46 H 0.053 0.947 47 H 0.001 0.999 48 H 0.004 0.996 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.112 2.424 21.968 22.202 hybrid contribution 1.180 0.377 -1.523 1.963 sum 3.292 2.801 20.445 20.897 Atomic orbital electron populations 1.21593 0.94995 1.00787 1.02175 1.21577 0.96989 0.95591 1.01260 1.21686 0.91765 0.95754 0.92499 0.88294 1.22249 0.97567 0.96275 1.02033 1.20590 0.90511 0.97225 1.02993 1.20074 0.96216 0.99109 0.93367 1.21320 0.95380 1.00410 0.97108 1.21500 0.93890 0.99252 0.99421 1.21439 1.01043 1.00415 0.92296 1.21383 0.94687 1.00186 0.98818 1.21225 0.94737 1.01627 0.98338 1.60579 1.60790 1.07367 1.01499 1.21807 0.94648 0.98603 0.89961 1.20989 0.96177 0.98650 0.93330 0.93093 1.21456 0.95362 0.99571 1.00324 1.18989 0.93626 0.94529 0.93135 1.21648 1.21171 1.20709 0.93076 0.92151 1.25941 0.95214 0.95974 1.02762 1.70105 1.28533 1.32777 1.26247 0.85531 0.79142 0.78299 0.78612 1.19901 1.20919 1.18708 0.92067 0.93028 0.93465 0.93974 0.90737 0.90606 0.93777 0.92271 0.88965 0.84033 0.83543 0.84152 0.85691 0.87786 0.83957 0.96545 0.92343 0.95000 0.91217 0.94748 0.99942 0.99592 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.79 71.98 0.70 -2.24 16 2 C -0.12 -2.54 5.31 30.59 0.16 -2.38 16 3 C 0.09 1.95 2.53 44.91 0.11 2.06 16 4 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 5 C -0.14 -3.07 4.30 30.59 0.13 -2.93 16 6 C -0.08 -1.56 5.12 29.85 0.15 -1.40 16 7 C -0.09 -2.02 5.13 -19.87 -0.10 -2.12 16 8 C -0.12 -2.37 9.70 22.27 0.22 -2.15 16 9 C -0.12 -2.18 10.05 22.27 0.22 -1.96 16 10 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 11 C -0.13 -3.18 10.05 22.27 0.22 -2.95 16 12 C -0.14 -3.77 9.70 22.27 0.22 -3.56 16 13 N -0.67 -17.42 5.17 -491.58 -2.54 -19.96 16 14 C 0.08 2.70 4.18 86.30 0.36 3.06 16 15 C -0.07 -3.00 2.52 -10.79 -0.03 -3.02 16 16 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 17 C -0.11 -4.25 8.89 71.98 0.64 -3.61 16 18 C 0.03 1.87 4.45 29.85 0.13 2.00 16 19 C -0.53 -30.39 8.41 25.60 0.22 -30.17 16 20 H 0.06 3.35 7.06 -2.91 -0.02 3.33 16 21 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 22 N -0.94 -58.15 13.29 21.45 0.28 -57.86 16 23 Si 0.96 45.15 29.54 68.60 2.03 47.17 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 26 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 1.31 7.74 -2.39 -0.02 1.29 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.04 1.12 6.24 -2.39 -0.01 1.10 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.04 1.22 6.17 -2.39 -0.01 1.20 16 34 H 0.06 1.37 6.95 -2.39 -0.02 1.35 16 35 H 0.09 1.48 8.08 -2.38 -0.02 1.46 16 36 H 0.14 1.98 8.06 -2.92 -0.02 1.95 16 37 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 38 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 39 H 0.13 2.74 8.06 -2.91 -0.02 2.71 16 40 H 0.10 3.08 8.06 -2.91 -0.02 3.06 16 41 H 0.34 8.33 7.60 -89.70 -0.68 7.65 16 42 H 0.02 0.60 6.45 -2.39 -0.02 0.58 16 43 H 0.06 2.12 6.13 -2.38 -0.01 2.10 16 44 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.07 2.32 7.75 -2.39 -0.02 2.30 16 46 H 0.03 1.42 6.95 -2.39 -0.02 1.41 16 47 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 48 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 49 H 0.26 15.29 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -65.74 383.94 4.03 -61.71 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.21 Total: 22.39 kcal Atomic # 6 Polarization: -57.50 SS G_CDS: 4.05 Total: -53.45 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -2.26 Total: -77.82 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -65.74 4.03 -61.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602719303.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.015 kcal (2) G-P(sol) polarization free energy of solvation -65.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds