Wall clock time and date at job start Tue Mar 31 2020 06:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46885 * 2 1 4 4 C 1.50698 * 109.47096 * 119.99714 * 2 1 3 5 5 H 1.08002 * 120.00237 * 120.00119 * 4 2 1 6 6 C 1.37880 * 120.00338 * 299.99861 * 4 2 1 7 7 N 1.31520 * 119.99743 * 0.02562 * 6 4 2 8 8 Si 1.86789 * 120.00370 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47587 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47370 * 120.00036 * 8 6 4 11 11 H 1.48504 * 109.47372 * 240.00172 * 8 6 4 12 12 N 1.46892 * 109.47364 * 239.99658 * 2 1 3 13 13 C 1.46902 * 111.00041 * 84.99899 * 12 2 1 14 14 C 1.50696 * 109.47360 * 180.02562 * 13 12 2 15 15 N 1.31807 * 122.76915 * 90.02181 * 14 13 12 16 16 C 1.29004 * 117.13404 * 179.97438 * 15 14 13 17 17 S 1.70969 * 110.19137 * 359.97438 * 16 15 14 18 18 C 1.33733 * 122.76129 * 270.00274 * 14 13 12 19 19 Br 1.89097 * 126.04330 * 359.97438 * 18 14 13 20 20 H 1.09006 * 109.47520 * 300.00293 * 1 2 3 21 21 H 1.08998 * 109.47280 * 60.00075 * 1 2 3 22 22 H 1.08997 * 109.47185 * 180.02562 * 1 2 3 23 23 H 0.97002 * 120.00193 * 180.02562 * 7 6 4 24 24 H 1.00899 * 111.00692 * 208.95265 * 12 2 1 25 25 H 1.09000 * 109.47104 * 59.99993 * 13 12 2 26 26 H 1.09006 * 109.46876 * 300.00262 * 13 12 2 27 27 H 1.08001 * 124.90548 * 179.73630 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3213 -1.1201 4.0080 9 1 3.1464 -2.2868 3.6040 10 1 3.1466 -0.1871 4.8165 11 1 1.1660 -1.5864 4.8161 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2225 -2.3468 14 6 2.5874 -0.5219 -3.5559 15 7 1.7853 -1.1413 -4.3987 16 6 2.3343 -1.7445 -5.3981 17 16 4.0327 -1.5571 -5.3398 18 6 3.8862 -0.6081 -3.8624 19 35 5.3133 0.1554 -2.8844 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 0.7087 1.1615 3.4844 24 1 2.9173 -1.1205 -1.0287 25 1 2.7588 1.0461 -2.1182 26 1 1.0870 0.6162 -2.5525 27 1 1.7989 -2.2924 -6.1594 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869110.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:12 Heat of formation + Delta-G solvation = 48.422740 kcal Electronic energy + Delta-G solvation = -13339.795652 eV Core-core repulsion = 10884.851173 eV Total energy + Delta-G solvation = -2454.944479 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 289.978 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.87565 -35.84372 -32.96643 -31.97185 -29.92953 -27.91289 -25.69067 -25.06042 -23.72445 -19.81794 -19.34266 -18.35522 -16.45189 -15.70862 -15.06158 -14.69491 -14.17608 -13.42378 -13.33738 -13.20187 -12.69286 -12.11019 -11.59736 -11.37048 -11.13122 -10.86249 -10.72706 -10.42718 -10.21894 -10.10690 -10.01486 -9.61269 -9.24057 -8.88265 -8.72483 -8.46558 -7.30869 -6.01654 -4.07690 0.48216 0.85762 1.47662 1.80517 2.74129 3.29711 3.37578 3.42150 4.20188 4.42074 5.04818 5.11520 5.29678 5.55427 5.85410 6.07138 6.26502 6.89936 7.17284 7.23531 7.48924 7.66957 7.79142 7.89587 8.27556 8.35798 8.63585 9.01576 9.57918 11.04775 Molecular weight = 289.98amu Principal moments of inertia in cm(-1) A = 0.024008 B = 0.005536 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.999848 B = 5056.635225 C = 5751.903477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.213 3.787 3 H 0.004 0.996 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.676 5.676 13 C 0.121 3.879 14 C 0.132 3.868 15 N -0.446 5.446 16 C 0.032 3.968 17 S 0.145 5.855 18 C -0.251 4.251 19 Br 0.031 6.969 20 H 0.081 0.919 21 H 0.005 0.995 22 H 0.032 0.968 23 H 0.260 0.740 24 H 0.332 0.668 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.485 -2.018 -16.480 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.106 3.894 3 H 0.022 0.978 4 C -0.554 4.554 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.308 5.308 13 C -0.011 4.011 14 C -0.004 4.004 15 N -0.159 5.159 16 C -0.267 4.267 17 S 0.396 5.604 18 C -0.452 4.452 19 Br 0.114 6.886 20 H 0.100 0.900 21 H 0.024 0.976 22 H 0.051 0.949 23 H 0.070 0.930 24 H 0.149 0.851 25 H 0.064 0.936 26 H 0.105 0.895 27 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 8.520 -2.237 -16.745 18.921 hybrid contribution 0.388 0.256 1.486 1.557 sum 8.909 -1.980 -15.259 17.780 Atomic orbital electron populations 1.21716 0.97664 0.99491 0.99422 1.19140 0.92748 0.92416 0.85081 0.97844 1.21261 1.31371 1.12489 0.90305 0.92173 1.24902 0.95047 0.95003 0.98992 1.69910 1.36641 1.22911 1.23352 0.86472 0.78611 0.79638 0.82872 1.19735 1.21111 1.20971 1.60777 1.32173 1.32456 1.05369 1.20631 1.00994 0.92742 0.86695 1.20627 0.86719 0.96155 0.96885 1.66351 1.37557 1.09307 1.02698 1.28592 0.95003 1.02463 1.00645 1.83885 1.09489 1.47027 1.19996 1.27552 0.97971 1.14753 1.04914 1.96739 1.39863 1.81062 1.70983 0.90018 0.97576 0.94898 0.92980 0.85126 0.93587 0.89510 0.77942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 9.19 37.16 0.34 -2.82 15 2 C 0.21 5.47 2.60 -68.87 -0.18 5.29 15 3 H 0.00 0.11 7.80 -51.93 -0.40 -0.30 15 4 C -0.52 -14.25 8.59 -34.44 -0.30 -14.55 15 5 H 0.06 1.65 7.62 -52.49 -0.40 1.25 15 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 15 7 N -0.89 -25.46 11.32 55.43 0.63 -24.83 15 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 15 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 15 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 12 N -0.68 -15.01 6.29 -109.23 -0.69 -15.70 15 13 C 0.12 2.33 5.65 -4.98 -0.03 2.30 15 14 C 0.13 2.22 6.26 -84.18 -0.53 1.69 15 15 N -0.45 -7.11 10.53 -11.88 -0.13 -7.24 15 16 C 0.03 0.37 12.23 51.57 0.63 1.00 15 17 S 0.14 1.59 23.22 -107.50 -2.50 -0.91 15 18 C -0.25 -3.69 7.05 29.15 0.21 -3.48 15 19 Br 0.03 0.43 33.01 -68.01 -2.25 -1.81 15 20 H 0.08 2.23 6.07 -51.93 -0.32 1.92 15 21 H 0.01 0.12 7.45 -51.93 -0.39 -0.26 15 22 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 23 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 24 H 0.33 7.30 8.22 -39.29 -0.32 6.98 15 25 H 0.05 0.87 7.28 -51.93 -0.38 0.49 15 26 H 0.09 1.71 7.44 -51.93 -0.39 1.33 15 27 H 0.20 1.49 8.06 -52.49 -0.42 1.07 15 LS Contribution 268.48 15.07 4.05 4.05 Total: -1.00 -29.69 268.48 -8.42 -38.11 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -2.57 Total: 0.89 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 0.05 Total: -8.94 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.18 Total: -47.77 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.50 Total: -0.91 kcal Atomic # 35 Polarization: 0.43 SS G_CDS: -2.25 Total: -1.81 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.69 -8.42 -38.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869110.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.536 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds