Wall clock time and date at job start Tue Mar 31 2020 06:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46885 * 2 1 4 4 C 1.50698 * 109.47096 * 119.99714 * 2 1 3 5 5 H 1.08002 * 120.00237 * 120.00119 * 4 2 1 6 6 C 1.37880 * 120.00338 * 299.99861 * 4 2 1 7 7 N 1.31520 * 119.99743 * 0.02562 * 6 4 2 8 8 Si 1.86789 * 120.00370 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47587 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47370 * 120.00036 * 8 6 4 11 11 H 1.48504 * 109.47372 * 240.00172 * 8 6 4 12 12 N 1.46892 * 109.47364 * 239.99658 * 2 1 3 13 13 C 1.46902 * 111.00041 * 84.99899 * 12 2 1 14 14 C 1.50696 * 109.47360 * 180.02562 * 13 12 2 15 15 N 1.31807 * 122.76915 * 90.02181 * 14 13 12 16 16 C 1.29004 * 117.13404 * 179.97438 * 15 14 13 17 17 S 1.70969 * 110.19137 * 359.97438 * 16 15 14 18 18 C 1.33733 * 122.76129 * 270.00274 * 14 13 12 19 19 Br 1.89097 * 126.04330 * 359.97438 * 18 14 13 20 20 H 1.09006 * 109.47520 * 300.00293 * 1 2 3 21 21 H 1.08998 * 109.47280 * 60.00075 * 1 2 3 22 22 H 1.08997 * 109.47185 * 180.02562 * 1 2 3 23 23 H 0.97002 * 120.00193 * 180.02562 * 7 6 4 24 24 H 1.00899 * 111.00692 * 208.95265 * 12 2 1 25 25 H 1.09000 * 109.47104 * 59.99993 * 13 12 2 26 26 H 1.09006 * 109.46876 * 300.00262 * 13 12 2 27 27 H 1.08001 * 124.90548 * 179.73630 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3213 -1.1201 4.0080 9 1 3.1464 -2.2868 3.6040 10 1 3.1466 -0.1871 4.8165 11 1 1.1660 -1.5864 4.8161 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2225 -2.3468 14 6 2.5874 -0.5219 -3.5559 15 7 1.7853 -1.1413 -4.3987 16 6 2.3343 -1.7445 -5.3981 17 16 4.0327 -1.5571 -5.3398 18 6 3.8862 -0.6081 -3.8624 19 35 5.3133 0.1554 -2.8844 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 0.7087 1.1615 3.4844 24 1 2.9173 -1.1205 -1.0287 25 1 2.7588 1.0461 -2.1182 26 1 1.0870 0.6162 -2.5525 27 1 1.7989 -2.2924 -6.1594 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602869110.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:12 Heat of formation + Delta-G solvation = 27.906366 kcal Electronic energy + Delta-G solvation = -13340.685309 eV Core-core repulsion = 10884.851173 eV Total energy + Delta-G solvation = -2455.834136 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 289.978 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.00556 -37.67104 -34.74227 -33.33582 -31.47833 -29.46438 -27.47074 -26.63400 -25.10879 -21.81115 -20.53465 -19.49833 -18.37767 -16.92240 -16.79467 -16.13140 -15.87491 -15.11200 -14.75063 -14.45316 -14.19600 -13.72253 -13.37031 -12.95181 -12.71940 -12.51891 -12.46659 -12.29490 -12.19488 -11.93136 -11.40154 -10.91323 -10.65576 -10.57962 -10.22422 -9.87876 -9.12996 -8.13090 -6.26886 -0.54470 -0.15482 0.43839 0.79342 1.41483 1.43343 1.54966 1.61143 2.42180 3.15572 3.16363 3.69651 3.97926 4.12461 4.48449 4.63714 4.84376 4.89710 5.08605 5.19483 5.44398 5.65738 5.83455 6.20443 6.40177 6.61390 6.70807 6.94616 7.42902 8.93002 Molecular weight = 289.98amu Principal moments of inertia in cm(-1) A = 0.024008 B = 0.005536 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.999848 B = 5056.635225 C = 5751.903477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.218 3.782 3 H -0.024 1.024 4 C -0.535 4.535 5 H 0.057 0.943 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.962 3.038 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.280 1.280 12 N -0.674 5.674 13 C 0.126 3.874 14 C 0.112 3.888 15 N -0.489 5.489 16 C 0.039 3.961 17 S 0.227 5.773 18 C -0.272 4.272 19 Br 0.027 6.973 20 H 0.060 0.940 21 H 0.020 0.980 22 H 0.026 0.974 23 H 0.263 0.737 24 H 0.332 0.668 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.397 -3.380 -17.759 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.110 3.890 3 H -0.006 1.006 4 C -0.573 4.573 5 H 0.075 0.925 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.787 3.213 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.206 1.206 12 N -0.306 5.306 13 C -0.005 4.005 14 C -0.024 4.024 15 N -0.203 5.203 16 C -0.259 4.259 17 S 0.479 5.521 18 C -0.473 4.473 19 Br 0.110 6.890 20 H 0.079 0.921 21 H 0.039 0.961 22 H 0.045 0.955 23 H 0.072 0.928 24 H 0.149 0.851 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 9.445 -3.609 -18.057 20.695 hybrid contribution 0.143 0.658 1.731 1.858 sum 9.587 -2.950 -16.325 19.161 Atomic orbital electron populations 1.21542 0.97654 0.98821 0.99082 1.18932 0.92728 0.91037 0.86276 1.00615 1.21535 1.31676 1.12635 0.91444 0.92452 1.25698 0.95128 0.95662 1.01908 1.70027 1.37362 1.24011 1.24153 0.85446 0.78128 0.78619 0.79066 1.19139 1.20522 1.20568 1.60656 1.32165 1.32821 1.04922 1.20451 1.00460 0.92667 0.86955 1.20171 0.87681 0.97723 0.96873 1.66310 1.38580 1.11192 1.04232 1.29313 0.96106 1.00623 0.99809 1.83624 1.07954 1.44213 1.16288 1.27756 0.97399 1.15335 1.06855 1.96728 1.39394 1.81318 1.71563 0.92110 0.96091 0.95521 0.92777 0.85128 0.93823 0.90751 0.73791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.84 9.19 71.98 0.66 -5.18 15 2 C 0.22 11.47 2.60 44.17 0.11 11.59 15 3 H -0.02 -1.35 7.80 -2.39 -0.02 -1.37 15 4 C -0.53 -29.90 8.59 25.60 0.22 -29.68 15 5 H 0.06 3.17 7.62 -2.91 -0.02 3.15 15 6 C 0.02 0.86 5.30 84.65 0.45 1.31 15 7 N -0.92 -53.13 11.32 21.45 0.24 -52.89 15 8 Si 0.96 43.89 29.54 68.60 2.03 45.92 15 9 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 12 N -0.67 -30.43 6.29 -499.49 -3.14 -33.57 15 13 C 0.13 4.94 5.65 85.56 0.48 5.42 15 14 C 0.11 3.69 6.26 41.54 0.26 3.95 15 15 N -0.49 -14.88 10.53 -191.49 -2.02 -16.90 15 16 C 0.04 0.78 12.23 130.66 1.60 2.38 15 17 S 0.23 4.25 23.22 -56.49 -1.31 2.94 15 18 C -0.27 -7.62 7.05 66.80 0.47 -7.15 15 19 Br 0.03 0.75 33.01 -20.37 -0.67 0.07 15 20 H 0.06 3.40 6.07 -2.38 -0.01 3.38 15 21 H 0.02 0.97 7.45 -2.39 -0.02 0.95 15 22 H 0.03 1.36 8.14 -2.39 -0.02 1.34 15 23 H 0.26 14.41 8.31 -92.71 -0.77 13.63 15 24 H 0.33 14.79 8.22 -89.69 -0.74 14.05 15 25 H 0.04 1.70 7.28 -2.39 -0.02 1.68 15 26 H 0.07 3.03 7.44 -2.38 -0.02 3.01 15 27 H 0.25 2.48 8.06 -2.91 -0.02 2.45 15 Total: -1.00 -64.06 268.48 -0.15 -64.22 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.46 Total: 7.57 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 4.26 Total: -17.37 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -4.92 Total: -103.36 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -1.31 Total: 2.94 kcal Atomic # 35 Polarization: 0.75 SS G_CDS: -0.67 Total: 0.07 kcal Total: -64.06 -0.15 -64.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869110.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.123 kcal (2) G-P(sol) polarization free energy of solvation -64.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds