Wall clock time and date at job start Tue Mar 31 2020 06:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46794 * 2 1 4 4 C 1.50700 * 109.46796 * 240.00432 * 2 1 3 5 5 H 1.08007 * 119.99543 * 239.99845 * 4 2 1 6 6 C 1.37870 * 120.00458 * 59.99812 * 4 2 1 7 7 N 1.31518 * 119.99844 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00206 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46926 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46989 * 119.99743 * 8 6 4 11 11 H 1.48493 * 109.47262 * 240.00156 * 8 6 4 12 12 N 1.46892 * 109.47132 * 120.00206 * 2 1 3 13 13 C 1.46902 * 111.00041 * 274.99924 * 12 2 1 14 14 C 1.50696 * 109.47360 * 180.02562 * 13 12 2 15 15 N 1.31807 * 122.76915 * 90.02181 * 14 13 12 16 16 C 1.29004 * 117.13404 * 179.97438 * 15 14 13 17 17 S 1.70969 * 110.19137 * 359.97438 * 16 15 14 18 18 C 1.33733 * 122.76129 * 270.00274 * 14 13 12 19 19 Br 1.89097 * 126.04330 * 359.97438 * 18 14 13 20 20 H 1.09001 * 109.46745 * 299.99724 * 1 2 3 21 21 H 1.08997 * 109.47548 * 59.99877 * 1 2 3 22 22 H 1.09000 * 109.47244 * 180.02562 * 1 2 3 23 23 H 0.97000 * 119.99453 * 179.97438 * 7 6 4 24 24 H 1.00903 * 110.99796 * 151.04847 * 12 2 1 25 25 H 1.09000 * 109.47104 * 59.99993 * 13 12 2 26 26 H 1.09006 * 109.46876 * 300.00262 * 13 12 2 27 27 H 1.08001 * 124.90548 * 179.73630 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9426 0.8297 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 3.1473 -2.2862 -3.6039 10 1 1.1676 -1.5865 -4.8165 11 1 3.1471 -0.1857 -4.8161 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2226 2.3468 14 6 2.5885 -0.5215 3.5556 15 7 3.8688 -0.6054 3.8574 16 6 4.1809 -1.2695 4.9184 17 16 2.7712 -1.8814 5.6676 18 6 1.7754 -1.1509 4.4108 19 35 -0.1098 -1.2392 4.2934 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 0.7086 1.1613 -3.4844 24 1 2.9173 -1.1205 1.0286 25 1 1.0871 0.6163 2.5525 26 1 2.7589 1.0462 2.1181 27 1 5.1877 -1.4208 5.2790 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869118.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:14 Heat of formation + Delta-G solvation = 48.173507 kcal Electronic energy + Delta-G solvation = -13343.089926 eV Core-core repulsion = 10888.134640 eV Total energy + Delta-G solvation = -2454.955287 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 289.978 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.87065 -35.81062 -32.90821 -31.94567 -29.89440 -27.93189 -25.55298 -25.11216 -23.76262 -19.80238 -19.36592 -18.20579 -16.56631 -15.70137 -15.02778 -14.63492 -13.98040 -13.80449 -13.26152 -13.19866 -12.48243 -12.04379 -11.60067 -11.28249 -11.16348 -10.89369 -10.73513 -10.29491 -10.24426 -10.08429 -10.00677 -9.62500 -9.22034 -8.85361 -8.69793 -8.45791 -7.29778 -6.01157 -4.07109 0.51035 0.89747 1.50724 1.87312 2.72963 3.30277 3.38009 3.42696 4.19288 4.42712 5.05518 5.18729 5.30251 5.55931 5.82154 6.15126 6.26333 6.90045 7.17347 7.23762 7.49768 7.63091 7.79673 7.90572 8.28246 8.36866 8.64338 9.02370 9.58563 11.05250 Molecular weight = 289.98amu Principal moments of inertia in cm(-1) A = 0.026343 B = 0.005239 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.656666 B = 5343.304907 C = 6053.778023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.213 3.787 3 H 0.003 0.997 4 C -0.515 4.515 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.676 5.676 13 C 0.124 3.876 14 C 0.121 3.879 15 N -0.458 5.458 16 C 0.030 3.970 17 S 0.144 5.856 18 C -0.230 4.230 19 Br 0.035 6.965 20 H 0.005 0.995 21 H 0.080 0.920 22 H 0.032 0.968 23 H 0.260 0.740 24 H 0.334 0.666 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.978 -3.976 18.441 18.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.106 3.894 3 H 0.020 0.980 4 C -0.554 4.554 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.307 5.307 13 C -0.008 4.008 14 C -0.014 4.014 15 N -0.172 5.172 16 C -0.269 4.269 17 S 0.395 5.605 18 C -0.430 4.430 19 Br 0.119 6.881 20 H 0.024 0.976 21 H 0.099 0.901 22 H 0.051 0.949 23 H 0.070 0.930 24 H 0.151 0.849 25 H 0.105 0.895 26 H 0.061 0.939 27 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.151 -4.491 19.005 19.529 hybrid contribution 1.306 0.500 -1.731 2.226 sum 1.156 -3.991 17.274 17.766 Atomic orbital electron populations 1.21699 0.97617 0.99448 0.99361 1.19136 0.92753 0.92388 0.85131 0.97954 1.21269 1.31327 1.12480 0.90334 0.92181 1.24903 0.95059 0.95008 0.99002 1.69910 1.36690 1.22919 1.23333 0.86465 0.78592 0.79618 0.82869 1.19769 1.20998 1.21114 1.60819 1.32297 1.32277 1.05349 1.20614 0.99930 0.93136 0.87134 1.20615 0.86170 0.97246 0.97382 1.66358 1.17766 1.17659 1.15415 1.28496 1.03902 0.99223 0.95304 1.83896 0.99003 1.51036 1.26566 1.27457 0.97819 1.13260 1.04509 1.96716 0.95748 1.97635 1.98050 0.97593 0.90112 0.94888 0.92997 0.84890 0.89490 0.93904 0.78014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.06 9.19 37.16 0.34 -2.72 15 2 C 0.21 5.44 2.60 -68.87 -0.18 5.26 15 3 H 0.00 0.08 7.80 -51.93 -0.40 -0.33 15 4 C -0.52 -14.27 8.59 -34.44 -0.30 -14.57 15 5 H 0.06 1.66 7.62 -52.48 -0.40 1.26 15 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 15 7 N -0.89 -25.51 11.32 55.43 0.63 -24.88 15 8 Si 0.90 21.48 29.54 -169.99 -5.02 16.45 15 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 12 N -0.68 -14.83 6.29 -109.22 -0.69 -15.52 15 13 C 0.12 2.37 5.65 -4.98 -0.03 2.34 15 14 C 0.12 2.03 6.26 -84.18 -0.53 1.50 15 15 N -0.46 -7.17 10.53 -11.88 -0.13 -7.30 15 16 C 0.03 0.34 12.23 51.57 0.63 0.97 15 17 S 0.14 1.59 23.22 -107.50 -2.50 -0.90 15 18 C -0.23 -3.42 7.05 29.15 0.21 -3.22 15 19 Br 0.04 0.51 33.01 -68.01 -2.25 -1.73 15 20 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 15 21 H 0.08 2.19 6.07 -51.93 -0.32 1.87 15 22 H 0.03 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.26 7.08 8.31 -40.82 -0.34 6.75 15 24 H 0.33 7.45 8.22 -39.29 -0.32 7.12 15 25 H 0.09 1.65 6.66 -51.93 -0.35 1.30 15 26 H 0.04 0.85 8.06 -51.93 -0.42 0.43 15 27 H 0.20 1.47 8.06 -52.49 -0.42 1.05 15 LS Contribution 268.48 15.07 4.05 4.05 Total: -1.00 -29.45 268.48 -8.42 -37.88 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -2.57 Total: 0.76 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 0.05 Total: -8.81 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.18 Total: -47.70 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.50 Total: -0.90 kcal Atomic # 35 Polarization: 0.51 SS G_CDS: -2.25 Total: -1.73 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.45 -8.42 -37.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869118.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.050 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds