Wall clock time and date at job start Tue Mar 31 2020 06:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46794 * 2 1 4 4 C 1.50700 * 109.46796 * 240.00432 * 2 1 3 5 5 H 1.08007 * 119.99543 * 239.99845 * 4 2 1 6 6 C 1.37870 * 120.00458 * 59.99812 * 4 2 1 7 7 N 1.31518 * 119.99844 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00206 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46926 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46989 * 119.99743 * 8 6 4 11 11 H 1.48493 * 109.47262 * 240.00156 * 8 6 4 12 12 N 1.46892 * 109.47132 * 120.00206 * 2 1 3 13 13 C 1.46902 * 111.00041 * 274.99924 * 12 2 1 14 14 C 1.50696 * 109.47360 * 180.02562 * 13 12 2 15 15 N 1.31807 * 122.76915 * 90.02181 * 14 13 12 16 16 C 1.29004 * 117.13404 * 179.97438 * 15 14 13 17 17 S 1.70969 * 110.19137 * 359.97438 * 16 15 14 18 18 C 1.33733 * 122.76129 * 270.00274 * 14 13 12 19 19 Br 1.89097 * 126.04330 * 359.97438 * 18 14 13 20 20 H 1.09001 * 109.46745 * 299.99724 * 1 2 3 21 21 H 1.08997 * 109.47548 * 59.99877 * 1 2 3 22 22 H 1.09000 * 109.47244 * 180.02562 * 1 2 3 23 23 H 0.97000 * 119.99453 * 179.97438 * 7 6 4 24 24 H 1.00903 * 110.99796 * 151.04847 * 12 2 1 25 25 H 1.09000 * 109.47104 * 59.99993 * 13 12 2 26 26 H 1.09006 * 109.46876 * 300.00262 * 13 12 2 27 27 H 1.08001 * 124.90548 * 179.73630 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9426 0.8297 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 3.1473 -2.2862 -3.6039 10 1 1.1676 -1.5865 -4.8165 11 1 3.1471 -0.1857 -4.8161 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2226 2.3468 14 6 2.5885 -0.5215 3.5556 15 7 3.8688 -0.6054 3.8574 16 6 4.1809 -1.2695 4.9184 17 16 2.7712 -1.8814 5.6676 18 6 1.7754 -1.1509 4.4108 19 35 -0.1098 -1.2392 4.2934 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 0.7086 1.1613 -3.4844 24 1 2.9173 -1.1205 1.0286 25 1 1.0871 0.6163 2.5525 26 1 2.7589 1.0462 2.1181 27 1 5.1877 -1.4208 5.2790 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602869118.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:14 Heat of formation + Delta-G solvation = 27.854898 kcal Electronic energy + Delta-G solvation = -13343.971007 eV Core-core repulsion = 10888.134640 eV Total energy + Delta-G solvation = -2455.836368 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 289.978 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.00069 -37.64109 -34.70770 -33.29245 -31.45420 -29.47057 -27.40869 -26.58397 -25.16876 -21.78989 -20.55509 -19.31608 -18.46571 -17.11753 -16.67850 -16.08111 -15.69953 -15.24103 -14.84414 -14.38908 -14.17445 -13.69831 -13.11402 -12.95502 -12.77396 -12.67129 -12.37128 -12.22039 -12.14773 -11.97445 -11.30501 -10.90141 -10.66970 -10.58023 -10.19792 -9.85268 -9.12328 -8.13134 -6.26942 -0.51771 -0.11715 0.47263 0.83910 1.41358 1.42957 1.54648 1.59829 2.42048 3.14912 3.15644 3.78603 3.93860 4.11176 4.50437 4.66492 4.82148 4.95271 5.11227 5.21653 5.46896 5.65963 5.85242 6.22031 6.39644 6.59355 6.69613 6.94536 7.42922 8.92794 Molecular weight = 289.98amu Principal moments of inertia in cm(-1) A = 0.026343 B = 0.005239 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.656666 B = 5343.304907 C = 6053.778023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.218 3.782 3 H -0.029 1.029 4 C -0.536 4.536 5 H 0.057 0.943 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.963 3.037 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.280 1.280 12 N -0.669 5.669 13 C 0.129 3.871 14 C 0.102 3.898 15 N -0.498 5.498 16 C 0.038 3.962 17 S 0.225 5.775 18 C -0.254 4.254 19 Br 0.031 6.969 20 H 0.023 0.977 21 H 0.057 0.943 22 H 0.028 0.972 23 H 0.263 0.737 24 H 0.331 0.669 25 H 0.084 0.916 26 H 0.028 0.972 27 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.906 -5.341 19.720 20.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.110 3.890 3 H -0.011 1.011 4 C -0.574 4.574 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.788 3.212 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.206 1.206 12 N -0.300 5.300 13 C -0.002 4.002 14 C -0.033 4.033 15 N -0.213 5.213 16 C -0.260 4.260 17 S 0.477 5.523 18 C -0.455 4.455 19 Br 0.114 6.886 20 H 0.042 0.958 21 H 0.076 0.924 22 H 0.047 0.953 23 H 0.072 0.928 24 H 0.147 0.853 25 H 0.103 0.897 26 H 0.047 0.953 27 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 0.781 -5.867 20.318 21.162 hybrid contribution 1.058 0.904 -1.977 2.417 sum 1.838 -4.963 18.341 19.090 Atomic orbital electron populations 1.21493 0.97209 0.98929 0.99063 1.18939 0.93012 0.90769 0.86295 1.01112 1.21556 1.31654 1.12634 0.91550 0.92516 1.25702 0.95153 0.95678 1.01928 1.70030 1.37396 1.24000 1.24130 0.85436 0.78119 0.78560 0.79062 1.19238 1.20484 1.20598 1.60715 1.31996 1.32437 1.04820 1.20447 0.99679 0.92703 0.87419 1.20164 0.87318 0.98650 0.97212 1.66324 1.17275 1.19981 1.17705 1.29237 1.06129 0.96890 0.93716 1.83637 0.96588 1.48617 1.23445 1.27672 0.98116 1.13681 1.06056 1.96700 0.96083 1.97653 1.98206 0.95817 0.92403 0.95296 0.92796 0.85261 0.89744 0.95337 0.73831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.50 9.19 71.98 0.66 -4.84 15 2 C 0.22 11.41 2.60 44.17 0.11 11.53 15 3 H -0.03 -1.65 7.80 -2.39 -0.02 -1.67 15 4 C -0.54 -30.07 8.59 25.60 0.22 -29.85 15 5 H 0.06 3.15 7.62 -2.91 -0.02 3.13 15 6 C 0.01 0.82 5.30 84.65 0.45 1.27 15 7 N -0.92 -53.26 11.32 21.45 0.24 -53.02 15 8 Si 0.96 44.11 29.54 68.60 2.03 46.14 15 9 H -0.27 -11.96 7.11 99.48 0.71 -11.26 15 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 11 H -0.28 -12.55 7.11 99.48 0.71 -11.85 15 12 N -0.67 -29.88 6.29 -499.48 -3.14 -33.02 15 13 C 0.13 5.04 5.65 85.56 0.48 5.53 15 14 C 0.10 3.37 6.26 41.54 0.26 3.63 15 15 N -0.50 -14.90 10.53 -191.49 -2.02 -16.92 15 16 C 0.04 0.75 12.23 130.66 1.60 2.35 15 17 S 0.22 4.25 23.22 -56.49 -1.31 2.94 15 18 C -0.25 -7.21 7.05 66.80 0.47 -6.74 15 19 Br 0.03 0.86 33.01 -20.37 -0.67 0.18 15 20 H 0.02 1.06 7.45 -2.39 -0.02 1.04 15 21 H 0.06 3.20 6.07 -2.39 -0.01 3.19 15 22 H 0.03 1.43 8.14 -2.39 -0.02 1.41 15 23 H 0.26 14.43 8.31 -92.71 -0.77 13.66 15 24 H 0.33 15.01 8.22 -89.69 -0.74 14.27 15 25 H 0.08 3.27 6.66 -2.39 -0.02 3.25 15 26 H 0.03 1.18 8.06 -2.38 -0.02 1.16 15 27 H 0.25 2.43 8.06 -2.91 -0.02 2.40 15 Total: -1.00 -63.73 268.48 -0.15 -63.88 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 0.46 Total: 6.94 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 4.26 Total: -17.13 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -4.92 Total: -102.96 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -1.31 Total: 2.94 kcal Atomic # 35 Polarization: 0.86 SS G_CDS: -0.67 Total: 0.18 kcal Total: -63.73 -0.15 -63.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869118.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.739 kcal (2) G-P(sol) polarization free energy of solvation -63.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds