Wall clock time and date at job start Tue Mar 31 2020 06:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47332 * 2 1 4 4 C 1.36939 * 119.99854 * 266.05266 * 3 2 1 5 5 H 1.08002 * 119.99895 * 317.55294 * 4 3 2 6 6 C 1.38813 * 120.00100 * 137.55845 * 4 3 2 7 7 N 1.31616 * 119.99884 * 166.84670 * 6 4 3 8 8 Si 1.86800 * 119.99868 * 346.84067 * 6 4 3 9 9 H 1.48504 * 109.47137 * 95.06535 * 8 6 4 10 10 H 1.48490 * 109.47363 * 215.06676 * 8 6 4 11 11 H 1.48499 * 109.46994 * 335.07077 * 8 6 4 12 12 C 1.46501 * 119.99948 * 86.32460 * 3 2 1 13 13 C 1.50695 * 109.47034 * 84.03945 * 12 3 2 14 14 C 1.38254 * 120.00095 * 264.32750 * 13 12 3 15 15 C 1.38217 * 119.99832 * 179.77192 * 14 13 12 16 16 C 1.38251 * 120.00149 * 0.47683 * 15 14 13 17 17 C 1.50699 * 120.00532 * 179.77163 * 16 15 14 18 18 C 1.53001 * 109.47128 * 300.02852 * 17 16 15 19 19 C 1.53006 * 109.46970 * 60.02160 * 17 16 15 20 20 C 1.38218 * 119.99829 * 359.79676 * 16 15 14 21 21 C 1.38212 * 120.00035 * 84.60058 * 13 12 3 22 22 C 1.50707 * 119.99721 * 0.02562 * 21 13 12 23 23 C 1.53001 * 109.47231 * 121.30488 * 22 21 13 24 24 C 1.52999 * 109.46904 * 241.29833 * 22 21 13 25 25 H 1.08994 * 109.47037 * 60.00252 * 1 2 3 26 26 H 1.08997 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46680 * 299.99884 * 1 2 3 28 28 H 1.08999 * 109.47406 * 240.00091 * 2 1 3 29 29 H 1.09002 * 109.47319 * 119.99895 * 2 1 3 30 30 H 0.97006 * 119.99574 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.46962 * 204.04153 * 12 3 2 32 32 H 1.08997 * 109.47193 * 324.04177 * 12 3 2 33 33 H 1.07998 * 120.00447 * 359.97438 * 14 13 12 34 34 H 1.07997 * 119.99925 * 180.25136 * 15 14 13 35 35 H 1.08991 * 109.47653 * 180.02562 * 17 16 15 36 36 H 1.08999 * 109.47450 * 59.99274 * 18 17 16 37 37 H 1.09002 * 109.47588 * 179.97438 * 18 17 16 38 38 H 1.09000 * 109.46940 * 299.99653 * 18 17 16 39 39 H 1.08998 * 109.46836 * 60.00517 * 19 17 16 40 40 H 1.09003 * 109.47081 * 180.02562 * 19 17 16 41 41 H 1.08999 * 109.47006 * 300.00356 * 19 17 16 42 42 H 1.08001 * 119.99867 * 179.97438 * 20 16 15 43 43 H 1.08996 * 109.47348 * 1.29676 * 22 21 13 44 44 H 1.08996 * 109.47617 * 59.99353 * 23 22 21 45 45 H 1.08998 * 109.47226 * 179.97438 * 23 22 21 46 46 H 1.09007 * 109.46877 * 299.99933 * 23 22 21 47 47 H 1.09005 * 109.47169 * 60.00257 * 24 22 21 48 48 H 1.09005 * 109.47484 * 180.02562 * 24 22 21 49 49 H 1.09006 * 109.47454 * 300.00137 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3236 1.9995 -1.1831 5 1 2.8608 1.4619 -1.9505 6 6 1.9426 3.3172 -1.3962 7 7 2.4484 3.9935 -2.4056 8 14 0.7119 4.1305 -0.2502 9 1 1.4390 4.8845 0.8026 10 1 -0.1445 5.0637 -1.0252 11 1 -0.1371 3.0899 0.3834 12 6 2.1859 2.0989 1.2661 13 6 3.5258 1.7560 1.8644 14 6 3.6233 0.7560 2.8141 15 6 4.8530 0.4383 3.3594 16 6 5.9840 1.1272 2.9624 17 6 7.3240 0.7843 3.5607 18 6 7.2751 0.9947 5.0754 19 6 7.6578 -0.6782 3.2595 20 6 5.8856 2.1308 2.0171 21 6 4.6564 2.4450 1.4679 22 6 4.5491 3.5397 0.4377 23 6 5.0630 4.8522 1.0326 24 6 5.3891 3.1715 -0.7870 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.1819 4.9142 -2.5547 31 1 2.1328 3.1725 1.0850 32 1 1.3944 1.8074 1.9565 33 1 2.7391 0.2208 3.1275 34 1 4.9297 -0.3456 4.0983 35 1 8.0901 1.4282 3.1290 36 1 6.5089 0.3508 5.5071 37 1 8.2442 0.7463 5.5082 38 1 7.0373 2.0366 5.2900 39 1 7.6926 -0.8281 2.1804 40 1 8.6268 -0.9263 3.6926 41 1 6.8916 -1.3220 3.6913 42 1 6.7691 2.6692 1.7073 43 1 3.5070 3.6586 0.1410 44 1 6.1051 4.7333 1.3293 45 1 4.9858 5.6438 0.2873 46 1 4.4646 5.1146 1.9052 47 1 5.0230 2.2364 -1.2109 48 1 5.3119 3.9634 -1.5320 49 1 6.4313 3.0526 -0.4904 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604541043.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:34 Heat of formation + Delta-G solvation = 9.179733 kcal Electronic energy + Delta-G solvation = -24907.573747 eV Core-core repulsion = 21833.793517 eV Total energy + Delta-G solvation = -3073.780230 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.96580 -38.26465 -36.74391 -35.34086 -33.81247 -32.25958 -30.79550 -30.12792 -27.92039 -27.88913 -27.09245 -25.59271 -24.29856 -23.19986 -21.75357 -21.61048 -19.62769 -18.82478 -17.68325 -16.80650 -16.59260 -16.01908 -15.69234 -15.34868 -15.14125 -14.91096 -14.59400 -14.44825 -14.36851 -14.30679 -13.99500 -13.78685 -13.48966 -13.20608 -13.12566 -12.98518 -12.90990 -12.75220 -12.66845 -12.55008 -12.24833 -12.01944 -11.93344 -11.82434 -11.77725 -11.61338 -11.55653 -11.53153 -11.21819 -11.10509 -10.40365 -9.48242 -9.17408 -8.61249 -8.06564 -5.50964 0.61389 0.68110 1.27781 1.39873 1.47719 2.43393 2.90983 3.25857 3.54900 3.82588 3.92499 4.04654 4.16117 4.26952 4.32121 4.39821 4.41806 4.44450 4.48948 4.58823 4.65323 4.69897 4.73245 4.82230 4.84231 4.87037 4.87989 4.89017 5.02581 5.04855 5.05428 5.06319 5.08161 5.18850 5.25323 5.26268 5.37459 5.41673 5.43968 5.45835 5.54225 5.60510 5.68388 5.80926 5.88835 6.06890 6.11921 6.30451 6.34066 7.08079 7.69840 8.17199 9.10378 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.006276 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.972664 B = 4460.211140 C = 5249.125869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 N -0.608 5.608 4 C -0.232 4.232 5 H 0.037 0.963 6 C 0.011 3.989 7 N -0.933 5.933 8 Si 0.910 3.090 9 H -0.281 1.281 10 H -0.314 1.314 11 H -0.255 1.255 12 C 0.166 3.834 13 C -0.113 4.113 14 C -0.116 4.116 15 C -0.124 4.124 16 C -0.084 4.084 17 C -0.053 4.053 18 C -0.138 4.138 19 C -0.139 4.139 20 C -0.127 4.127 21 C -0.060 4.060 22 C -0.077 4.077 23 C -0.135 4.135 24 C -0.097 4.097 25 H 0.031 0.969 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.057 0.943 30 H 0.258 0.742 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.128 0.872 34 H 0.138 0.862 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.120 0.880 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.047 0.953 46 H 0.045 0.955 47 H 0.031 0.969 48 H 0.035 0.965 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.535 -6.711 14.609 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.019 3.981 3 N -0.331 5.331 4 C -0.362 4.362 5 H 0.055 0.945 6 C -0.186 4.186 7 N -0.576 5.576 8 Si 0.741 3.259 9 H -0.208 1.208 10 H -0.244 1.244 11 H -0.179 1.179 12 C 0.042 3.958 13 C -0.115 4.115 14 C -0.135 4.135 15 C -0.141 4.141 16 C -0.084 4.084 17 C -0.071 4.071 18 C -0.195 4.195 19 C -0.197 4.197 20 C -0.145 4.145 21 C -0.061 4.061 22 C -0.095 4.095 23 C -0.193 4.193 24 C -0.154 4.154 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.146 0.854 34 H 0.156 0.844 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.138 0.862 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.050 0.950 48 H 0.055 0.945 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.506 -6.588 14.503 17.609 hybrid contribution -0.893 0.996 -0.355 1.384 sum 6.613 -5.592 14.147 16.588 Atomic orbital electron populations 1.22195 0.98216 1.01031 1.00339 1.20942 0.92677 0.84804 0.99634 1.44205 1.75525 1.12524 1.00846 1.18366 1.29000 0.95714 0.93154 0.94537 1.25723 0.98208 0.97914 0.96763 1.69881 1.45233 1.10059 1.32458 0.86423 0.81680 0.78544 0.79280 1.20842 1.24351 1.17935 1.20187 0.92354 0.95646 0.87622 1.20667 0.96715 0.97438 0.96698 1.21105 0.98515 0.97096 0.96752 1.21023 0.91585 1.00532 1.00998 1.20009 0.96108 0.95689 0.96611 1.20117 0.92544 0.97920 0.96538 1.21811 1.02571 1.01576 0.93543 1.21821 1.02131 0.94600 1.01104 1.20945 0.96504 0.98888 0.98123 1.19791 0.93296 0.96796 0.96180 1.20377 1.02908 0.92760 0.93441 1.21805 1.01209 0.96425 0.99820 1.21310 0.97358 1.00343 0.96432 0.94965 0.90904 0.94003 0.93913 0.92428 0.93271 0.93947 0.92549 0.85434 0.84393 0.90733 0.92164 0.90977 0.93355 0.93882 0.90876 0.92183 0.86190 0.89497 0.91305 0.93405 0.93615 0.95016 0.94538 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.52 10.24 71.98 0.74 -4.78 16 2 C 0.14 5.57 6.41 86.38 0.55 6.12 16 3 N -0.61 -27.82 2.02 -706.34 -1.43 -29.25 16 4 C -0.23 -12.48 7.84 84.03 0.66 -11.82 16 5 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 6 C 0.01 0.62 3.76 84.86 0.32 0.94 16 7 N -0.93 -54.84 13.97 21.65 0.30 -54.54 16 8 Si 0.91 45.24 24.16 68.60 1.66 46.90 16 9 H -0.28 -13.63 6.80 99.48 0.68 -12.96 16 10 H -0.31 -16.09 7.11 99.48 0.71 -15.39 16 11 H -0.26 -12.13 6.99 99.48 0.70 -11.44 16 12 C 0.17 7.09 3.79 85.63 0.32 7.41 16 13 C -0.11 -4.34 5.45 -19.87 -0.11 -4.45 16 14 C -0.12 -3.68 9.60 22.27 0.21 -3.47 16 15 C -0.12 -3.37 8.71 22.27 0.19 -3.17 16 16 C -0.08 -2.32 4.78 -19.87 -0.09 -2.41 16 17 C -0.05 -1.09 3.09 -11.54 -0.04 -1.13 16 18 C -0.14 -2.36 9.01 71.98 0.65 -1.71 16 19 C -0.14 -2.57 9.01 71.98 0.65 -1.92 16 20 C -0.13 -4.14 8.34 22.27 0.19 -3.95 16 21 C -0.06 -2.32 4.78 -19.87 -0.09 -2.41 16 22 C -0.08 -3.24 2.40 -11.54 -0.03 -3.27 16 23 C -0.14 -4.90 8.99 71.98 0.65 -4.26 16 24 C -0.10 -4.20 8.74 71.98 0.63 -3.57 16 25 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.04 1.71 8.01 -2.39 -0.02 1.69 16 29 H 0.06 1.96 8.02 -2.39 -0.02 1.94 16 30 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 31 H 0.04 2.00 2.32 -2.39 -0.01 1.99 16 32 H 0.06 2.19 8.02 -2.39 -0.02 2.17 16 33 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 34 H 0.14 2.95 7.10 -2.91 -0.02 2.93 16 35 H 0.07 1.52 7.88 -2.39 -0.02 1.50 16 36 H 0.06 0.98 7.39 -2.39 -0.02 0.96 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 39 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 1.05 7.39 -2.39 -0.02 1.03 16 42 H 0.12 3.61 6.99 -2.91 -0.02 3.59 16 43 H 0.09 4.25 2.11 -2.39 -0.01 4.24 16 44 H 0.07 2.12 7.32 -2.39 -0.02 2.10 16 45 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 47 H 0.03 1.54 7.37 -2.38 -0.02 1.52 16 48 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 49 H 0.05 1.86 7.47 -2.38 -0.02 1.84 16 Total: -1.00 -60.73 369.22 6.78 -53.95 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.85 Total: 20.80 kcal Atomic # 6 Polarization: -43.26 SS G_CDS: 5.40 Total: -37.86 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -1.12 Total: -83.78 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.66 Total: 46.90 kcal Total: -60.73 6.78 -53.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604541043.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.128 kcal (2) G-P(sol) polarization free energy of solvation -60.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds