Wall clock time and date at job start Tue Mar 31 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38255 * 119.99808 * 2 1 4 4 C 1.38213 * 119.99919 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99859 * 0.26852 * 4 3 2 6 6 C 1.38210 * 119.99796 * 359.52131 * 5 4 3 7 7 C 1.50703 * 119.99964 * 180.25213 * 6 5 4 8 8 N 1.46897 * 109.46952 * 276.85929 * 7 6 5 9 9 C 1.46900 * 111.00215 * 164.20768 * 8 7 6 10 10 C 1.52998 * 109.47247 * 217.47548 * 9 8 7 11 11 C 1.52996 * 109.47585 * 174.61272 * 10 9 8 12 12 C 1.50695 * 109.47646 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99626 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00502 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99415 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00108 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47006 * 60.00740 * 16 14 12 18 18 H 1.48508 * 109.46855 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46999 * 300.00354 * 16 14 12 20 20 C 1.46901 * 110.99933 * 288.15431 * 8 7 6 21 21 C 1.52995 * 109.47065 * 163.58680 * 20 8 7 22 22 C 1.53009 * 109.47300 * 177.90375 * 21 20 8 23 23 C 1.52999 * 109.47668 * 297.90372 * 21 20 8 24 24 C 1.38208 * 120.00188 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47160 * 90.00218 * 1 2 3 26 26 H 1.08999 * 109.47120 * 210.00369 * 1 2 3 27 27 H 1.09008 * 109.46974 * 329.99990 * 1 2 3 28 28 H 1.08001 * 120.00086 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.99994 * 180.02562 * 4 3 2 30 30 H 1.08002 * 119.99901 * 179.72162 * 5 4 3 31 31 H 1.08999 * 109.46680 * 36.85447 * 7 6 5 32 32 H 1.09001 * 109.47382 * 156.85435 * 7 6 5 33 33 H 1.09001 * 109.46729 * 337.47077 * 9 8 7 34 34 H 1.08994 * 109.47853 * 97.47125 * 9 8 7 35 35 H 1.09007 * 109.46871 * 294.61156 * 10 9 8 36 36 H 1.09003 * 109.47273 * 54.60500 * 10 9 8 37 37 H 1.09011 * 109.46510 * 299.99584 * 11 10 9 38 38 H 1.08994 * 109.47275 * 59.99162 * 11 10 9 39 39 H 0.97006 * 119.99877 * 179.97438 * 15 14 12 40 40 H 1.08994 * 109.47264 * 283.59548 * 20 8 7 41 41 H 1.09004 * 109.46690 * 43.59295 * 20 8 7 42 42 H 1.09000 * 109.47318 * 57.90985 * 21 20 8 43 43 H 1.09007 * 109.46791 * 60.00141 * 22 21 20 44 44 H 1.08997 * 109.47149 * 180.02562 * 22 21 20 45 45 H 1.09003 * 109.46928 * 300.00654 * 22 21 20 46 46 H 1.09000 * 109.47283 * 185.01429 * 23 21 20 47 47 H 1.08999 * 109.47037 * 305.02091 * 23 21 20 48 48 H 1.09002 * 109.46839 * 65.01619 * 23 21 20 49 49 H 1.08007 * 119.99828 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 -0.0045 6 6 3.5806 -1.1969 -0.0002 7 6 4.3341 -2.5020 0.0001 8 7 4.7180 -2.8460 -1.3755 9 6 5.7545 -3.8868 -1.3882 10 6 6.7466 -3.6049 -2.5184 11 6 7.8983 -4.6096 -2.4486 12 6 8.8751 -4.3324 -3.5621 13 1 8.6925 -3.5208 -4.2510 14 6 10.0019 -5.1146 -3.7015 15 7 10.2240 -6.1030 -2.8629 16 14 11.2123 -4.7712 -5.0822 17 1 11.7475 -3.3934 -4.9400 18 1 12.3303 -5.7464 -5.0144 19 1 10.5212 -4.9013 -6.3901 20 6 3.5475 -3.2593 -2.1610 21 6 3.8913 -3.2136 -3.6511 22 6 2.6892 -3.6940 -4.4669 23 6 4.2379 -1.7781 -4.0509 24 6 2.1981 -1.1969 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5139 28 1 1.6582 2.1327 -0.0004 29 1 4.1204 2.1327 0.0010 30 1 5.3517 0.0000 -0.0087 31 1 5.2298 -2.4043 0.6135 32 1 3.6987 -3.2884 0.4074 33 1 6.2813 -3.8866 -0.4339 34 1 5.2903 -4.8602 -1.5467 35 1 6.2397 -3.6994 -3.4788 36 1 7.1397 -2.5937 -2.4130 37 1 8.4052 -4.5151 -1.4882 38 1 7.5052 -5.6208 -2.5539 39 1 11.0166 -6.6536 -2.9612 40 1 3.2644 -4.2748 -1.8843 41 1 2.7170 -2.5828 -1.9588 42 1 4.7455 -3.8617 -3.8470 43 1 1.8349 -3.0459 -4.2711 44 1 2.9343 -3.6619 -5.5284 45 1 2.4422 -4.7168 -4.1821 46 1 4.3959 -1.7290 -5.1283 47 1 3.4181 -1.1156 -3.7732 48 1 5.1468 -1.4670 -3.5359 49 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608832861.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:00 Heat of formation + Delta-G solvation = -3.424443 kcal Electronic energy + Delta-G solvation = -23382.446228 eV Core-core repulsion = 20308.119440 eV Total energy + Delta-G solvation = -3074.326788 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.69834 -38.01104 -34.54035 -33.86986 -32.75083 -31.83945 -30.56740 -27.23725 -26.86664 -26.75056 -26.39882 -23.97585 -22.23288 -21.77015 -20.38662 -19.99643 -19.42186 -16.49054 -16.26125 -16.03588 -15.40109 -15.11000 -14.85125 -14.38258 -14.28687 -13.84692 -13.59931 -13.38218 -13.17253 -12.98718 -12.79791 -12.43304 -12.34664 -12.07442 -12.02803 -11.86979 -11.75135 -11.49728 -11.16876 -11.03175 -10.95512 -10.76850 -10.65290 -10.60315 -10.48079 -10.43001 -10.22632 -9.39568 -9.14863 -9.03555 -8.81664 -8.59338 -8.28460 -7.96876 -5.94837 -3.96339 1.34241 1.38078 3.36779 3.40662 3.43656 3.67522 4.30270 4.51469 4.72389 4.74369 4.86424 5.06614 5.10688 5.19155 5.21931 5.32606 5.40319 5.40989 5.44805 5.54198 5.59391 5.63169 5.64848 5.68287 5.75532 5.87544 5.89799 6.02123 6.04182 6.07724 6.10243 6.14164 6.25132 6.39145 6.41929 6.46773 6.52862 6.56420 6.67673 6.74439 6.83643 6.96964 7.01555 7.29645 7.40435 7.49438 7.75604 7.91360 8.06818 8.50575 9.11026 9.67327 11.16645 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020675 B = 0.003379 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.942523 B = 8283.853703 C = 8702.718110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.126 4.126 4 C -0.118 4.118 5 C -0.100 4.100 6 C -0.063 4.063 7 C 0.090 3.910 8 N -0.529 5.529 9 C 0.054 3.946 10 C -0.105 4.105 11 C 0.021 3.979 12 C -0.516 4.516 13 H 0.054 0.946 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.062 3.938 21 C -0.103 4.103 22 C -0.145 4.145 23 C -0.131 4.131 24 C -0.116 4.116 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.061 0.939 34 H 0.037 0.963 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.013 0.987 38 H 0.012 0.988 39 H 0.260 0.740 40 H 0.028 0.972 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.048 0.952 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.042 0.958 47 H 0.041 0.959 48 H 0.069 0.931 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.592 11.198 5.769 23.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.145 4.145 4 C -0.136 4.136 5 C -0.118 4.118 6 C -0.064 4.064 7 C -0.037 4.037 8 N -0.253 5.253 9 C -0.072 4.072 10 C -0.142 4.142 11 C -0.016 4.016 12 C -0.554 4.554 13 H 0.072 0.928 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.066 4.066 21 C -0.121 4.121 22 C -0.203 4.203 23 C -0.188 4.188 24 C -0.135 4.135 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.031 0.969 38 H 0.030 0.970 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.088 0.912 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -19.265 11.457 5.603 23.104 hybrid contribution 0.427 -0.626 -0.380 0.847 sum -18.838 10.831 5.224 22.349 Atomic orbital electron populations 1.20766 0.91544 1.02445 1.02156 1.19828 0.95766 0.93208 1.00386 1.20958 0.94329 0.97207 1.01957 1.21126 0.94201 0.98045 1.00260 1.21038 1.00187 0.91652 0.98929 1.19802 0.93143 0.95157 0.98259 1.21128 0.98812 0.92780 0.90995 1.62040 1.10334 1.42593 1.10295 1.22424 0.92678 0.91365 1.00778 1.21819 0.95808 1.00647 0.95974 1.19085 0.91913 0.93723 0.96919 1.21223 1.06099 1.14823 1.13254 0.92755 1.25020 0.98043 0.95221 0.96221 1.69958 1.27666 1.19104 1.37012 0.86686 0.80764 0.77997 0.82726 1.20250 1.21375 1.20279 1.22260 0.92615 0.97881 0.93822 1.21330 0.98681 0.98583 0.93546 1.21817 0.97966 1.00447 1.00023 1.21643 1.02008 0.95295 0.99866 1.20905 0.93672 0.97270 1.01641 0.91364 0.91778 0.91788 0.86596 0.86286 0.85845 0.89866 0.94445 0.92036 0.94511 0.92505 0.92848 0.96892 0.96997 0.93065 0.95391 0.91304 0.89386 0.93319 0.92643 0.93176 0.93904 0.93993 0.91179 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.09 -0.95 5.88 -104.63 -0.62 -1.56 16 3 C -0.13 -1.29 9.70 -39.58 -0.38 -1.67 16 4 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 5 C -0.10 -1.21 9.73 -39.58 -0.39 -1.59 16 6 C -0.06 -0.77 4.92 -104.63 -0.52 -1.29 16 7 C 0.09 1.16 5.04 -4.98 -0.03 1.14 16 8 N -0.53 -7.79 3.73 -236.08 -0.88 -8.67 16 9 C 0.05 0.94 4.94 -3.83 -0.02 0.92 16 10 C -0.10 -2.17 4.93 -26.73 -0.13 -2.30 16 11 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 12 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 13 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 16 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C 0.06 0.85 4.16 -3.83 -0.02 0.83 16 21 C -0.10 -1.46 2.48 -90.62 -0.22 -1.68 16 22 C -0.14 -1.74 9.19 37.16 0.34 -1.40 16 23 C -0.13 -1.87 8.93 37.16 0.33 -1.54 16 24 C -0.12 -1.30 7.89 -39.59 -0.31 -1.62 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 27 H 0.06 0.42 8.09 -51.92 -0.42 0.00 16 28 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 29 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.08 1.07 7.60 -51.93 -0.39 0.67 16 32 H 0.04 0.45 7.95 -51.93 -0.41 0.04 16 33 H 0.06 1.05 7.37 -51.93 -0.38 0.67 16 34 H 0.04 0.64 7.47 -51.93 -0.39 0.25 16 35 H 0.06 1.18 5.05 -51.92 -0.26 0.91 16 36 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 38 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.03 0.38 7.71 -51.93 -0.40 -0.02 16 41 H 0.07 0.89 5.93 -51.93 -0.31 0.58 16 42 H 0.09 1.46 5.03 -51.93 -0.26 1.20 16 43 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.07 1.13 7.63 -51.93 -0.40 0.73 16 49 H 0.12 1.17 7.97 -52.48 -0.42 0.75 16 LS Contribution 384.68 15.07 5.80 5.80 Total: -1.00 -30.16 384.68 -10.99 -41.15 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -9.08 Total: -1.54 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: -2.54 Total: -27.11 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.14 Total: -35.25 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.16 -10.99 -41.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608832861.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.723 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds