Wall clock time and date at job start Tue Mar 31 2020 05:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38255 * 119.99808 * 2 1 4 4 C 1.38213 * 119.99919 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99859 * 0.26852 * 4 3 2 6 6 C 1.38210 * 119.99796 * 359.52131 * 5 4 3 7 7 C 1.50703 * 119.99964 * 180.25213 * 6 5 4 8 8 N 1.46897 * 109.46952 * 276.85929 * 7 6 5 9 9 C 1.46900 * 111.00215 * 164.20768 * 8 7 6 10 10 C 1.52998 * 109.47247 * 217.47548 * 9 8 7 11 11 C 1.52996 * 109.47585 * 174.61272 * 10 9 8 12 12 C 1.50695 * 109.47646 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99626 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00502 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99415 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00108 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47006 * 60.00740 * 16 14 12 18 18 H 1.48508 * 109.46855 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46999 * 300.00354 * 16 14 12 20 20 C 1.46901 * 110.99933 * 288.15431 * 8 7 6 21 21 C 1.52995 * 109.47065 * 163.58680 * 20 8 7 22 22 C 1.53009 * 109.47300 * 177.90375 * 21 20 8 23 23 C 1.52999 * 109.47668 * 297.90372 * 21 20 8 24 24 C 1.38208 * 120.00188 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47160 * 90.00218 * 1 2 3 26 26 H 1.08999 * 109.47120 * 210.00369 * 1 2 3 27 27 H 1.09008 * 109.46974 * 329.99990 * 1 2 3 28 28 H 1.08001 * 120.00086 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.99994 * 180.02562 * 4 3 2 30 30 H 1.08002 * 119.99901 * 179.72162 * 5 4 3 31 31 H 1.08999 * 109.46680 * 36.85447 * 7 6 5 32 32 H 1.09001 * 109.47382 * 156.85435 * 7 6 5 33 33 H 1.09001 * 109.46729 * 337.47077 * 9 8 7 34 34 H 1.08994 * 109.47853 * 97.47125 * 9 8 7 35 35 H 1.09007 * 109.46871 * 294.61156 * 10 9 8 36 36 H 1.09003 * 109.47273 * 54.60500 * 10 9 8 37 37 H 1.09011 * 109.46510 * 299.99584 * 11 10 9 38 38 H 1.08994 * 109.47275 * 59.99162 * 11 10 9 39 39 H 0.97006 * 119.99877 * 179.97438 * 15 14 12 40 40 H 1.08994 * 109.47264 * 283.59548 * 20 8 7 41 41 H 1.09004 * 109.46690 * 43.59295 * 20 8 7 42 42 H 1.09000 * 109.47318 * 57.90985 * 21 20 8 43 43 H 1.09007 * 109.46791 * 60.00141 * 22 21 20 44 44 H 1.08997 * 109.47149 * 180.02562 * 22 21 20 45 45 H 1.09003 * 109.46928 * 300.00654 * 22 21 20 46 46 H 1.09000 * 109.47283 * 185.01429 * 23 21 20 47 47 H 1.08999 * 109.47037 * 305.02091 * 23 21 20 48 48 H 1.09002 * 109.46839 * 65.01619 * 23 21 20 49 49 H 1.08007 * 119.99828 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 -0.0045 6 6 3.5806 -1.1969 -0.0002 7 6 4.3341 -2.5020 0.0001 8 7 4.7180 -2.8460 -1.3755 9 6 5.7545 -3.8868 -1.3882 10 6 6.7466 -3.6049 -2.5184 11 6 7.8983 -4.6096 -2.4486 12 6 8.8751 -4.3324 -3.5621 13 1 8.6925 -3.5208 -4.2510 14 6 10.0019 -5.1146 -3.7015 15 7 10.2240 -6.1030 -2.8629 16 14 11.2123 -4.7712 -5.0822 17 1 11.7475 -3.3934 -4.9400 18 1 12.3303 -5.7464 -5.0144 19 1 10.5212 -4.9013 -6.3901 20 6 3.5475 -3.2593 -2.1610 21 6 3.8913 -3.2136 -3.6511 22 6 2.6892 -3.6940 -4.4669 23 6 4.2379 -1.7781 -4.0509 24 6 2.1981 -1.1969 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5139 28 1 1.6582 2.1327 -0.0004 29 1 4.1204 2.1327 0.0010 30 1 5.3517 0.0000 -0.0087 31 1 5.2298 -2.4043 0.6135 32 1 3.6987 -3.2884 0.4074 33 1 6.2813 -3.8866 -0.4339 34 1 5.2903 -4.8602 -1.5467 35 1 6.2397 -3.6994 -3.4788 36 1 7.1397 -2.5937 -2.4130 37 1 8.4052 -4.5151 -1.4882 38 1 7.5052 -5.6208 -2.5539 39 1 11.0166 -6.6536 -2.9612 40 1 3.2644 -4.2748 -1.8843 41 1 2.7170 -2.5828 -1.9588 42 1 4.7455 -3.8617 -3.8470 43 1 1.8349 -3.0459 -4.2711 44 1 2.9343 -3.6619 -5.5284 45 1 2.4422 -4.7168 -4.1821 46 1 4.3959 -1.7290 -5.1283 47 1 3.4181 -1.1156 -3.7732 48 1 5.1468 -1.4670 -3.5359 49 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608832861.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:59 Heat of formation + Delta-G solvation = -17.063113 kcal Electronic energy + Delta-G solvation = -23383.037645 eV Core-core repulsion = 20308.119440 eV Total energy + Delta-G solvation = -3074.918205 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.61863 -39.14045 -35.90187 -35.50287 -33.93487 -33.20238 -31.86104 -28.58910 -28.03917 -27.90034 -27.31925 -25.59092 -23.54745 -22.81357 -21.69983 -21.29269 -20.61135 -18.43933 -17.33053 -17.27072 -16.58734 -16.28791 -16.12949 -15.90964 -15.31565 -14.95914 -14.75332 -14.46975 -14.31449 -14.14150 -13.95158 -13.82617 -13.59977 -13.22432 -13.13677 -12.92527 -12.88760 -12.72828 -12.69312 -12.51303 -12.36231 -12.30114 -11.91391 -11.86237 -11.77576 -11.71943 -11.50564 -11.30124 -11.08820 -10.84703 -10.50098 -9.67435 -9.42957 -9.17114 -8.18664 -6.29151 0.48907 0.55122 1.39354 1.42615 1.50430 2.41409 2.75430 3.14208 3.21587 3.82936 3.92453 3.94623 4.09498 4.13687 4.22016 4.31857 4.34881 4.35050 4.49256 4.54122 4.62965 4.70735 4.71606 4.80367 4.81495 4.84249 4.86749 4.87673 4.88384 5.01400 5.04125 5.09395 5.13412 5.19388 5.23599 5.28144 5.33126 5.35877 5.49455 5.57184 5.63860 5.65569 5.74128 5.78825 5.81821 5.92694 6.12978 6.21041 6.26889 6.32492 6.87643 7.39686 8.93030 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020675 B = 0.003379 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.942523 B = 8283.853703 C = 8702.718110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.130 4.130 4 C -0.124 4.124 5 C -0.119 4.119 6 C -0.075 4.075 7 C 0.092 3.908 8 N -0.533 5.533 9 C 0.067 3.933 10 C -0.087 4.087 11 C 0.027 3.973 12 C -0.540 4.540 13 H 0.057 0.943 14 C 0.000 4.000 15 N -0.934 5.934 16 Si 0.962 3.038 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.267 1.267 20 C 0.066 3.934 21 C -0.104 4.104 22 C -0.139 4.139 23 C -0.123 4.123 24 C -0.124 4.124 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.139 0.861 29 H 0.134 0.866 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.035 0.965 35 H 0.059 0.941 36 H 0.044 0.956 37 H -0.012 1.012 38 H -0.012 1.012 39 H 0.263 0.737 40 H 0.030 0.970 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.045 0.955 47 H 0.051 0.949 48 H 0.046 0.954 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.403 12.560 5.113 25.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.142 4.142 5 C -0.138 4.138 6 C -0.075 4.075 7 C -0.035 4.035 8 N -0.256 5.256 9 C -0.060 4.060 10 C -0.125 4.125 11 C -0.011 4.011 12 C -0.578 4.578 13 H 0.075 0.925 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.787 3.213 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.192 1.192 20 C -0.061 4.061 21 C -0.123 4.123 22 C -0.197 4.197 23 C -0.181 4.181 24 C -0.142 4.142 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.157 0.843 29 H 0.152 0.848 30 H 0.133 0.867 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.072 0.928 40 H 0.049 0.951 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -21.094 12.832 4.951 25.182 hybrid contribution 0.950 -1.014 -0.134 1.396 sum -20.144 11.818 4.817 23.846 Atomic orbital electron populations 1.20812 0.89536 1.03510 1.02901 1.20183 0.97306 0.92826 0.99187 1.21287 0.94156 0.98289 1.01027 1.21358 0.94864 0.98150 0.99802 1.21109 1.00017 0.92468 1.00188 1.19748 0.93735 0.94526 0.99518 1.21121 0.98982 0.93729 0.89635 1.61921 1.10515 1.41338 1.11874 1.22118 0.92837 0.92066 0.99020 1.21557 0.94857 0.98325 0.97719 1.18976 0.93185 0.93876 0.95031 1.21648 1.07050 1.15058 1.14004 0.92499 1.25961 1.00081 0.94836 0.98907 1.70091 1.28445 1.20057 1.38857 0.85546 0.78142 0.78226 0.79433 1.19228 1.20740 1.19176 1.22264 0.92335 0.98309 0.93229 1.21305 0.98684 0.97876 0.94399 1.21762 0.97319 1.00967 0.99655 1.21555 1.01224 0.95531 0.99763 1.21058 0.93202 0.98265 1.01715 0.90646 0.91082 0.90460 0.84335 0.84765 0.86746 0.90415 0.93456 0.92270 0.94704 0.92281 0.93686 0.99365 0.99335 0.92819 0.95149 0.89953 0.92250 0.91739 0.92454 0.92732 0.93577 0.93004 0.93473 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.01 71.24 0.71 -0.65 16 2 C -0.10 -1.73 5.88 -19.87 -0.12 -1.84 16 3 C -0.13 -2.34 9.70 22.27 0.22 -2.12 16 4 C -0.12 -2.51 10.05 22.27 0.22 -2.29 16 5 C -0.12 -2.86 9.73 22.27 0.22 -2.64 16 6 C -0.07 -1.78 4.92 -19.87 -0.10 -1.87 16 7 C 0.09 2.36 5.04 85.56 0.43 2.79 16 8 N -0.53 -15.69 3.73 -900.82 -3.36 -19.05 16 9 C 0.07 2.38 4.94 86.30 0.43 2.81 16 10 C -0.09 -3.73 4.93 30.59 0.15 -3.58 16 11 C 0.03 1.46 4.97 29.85 0.15 1.61 16 12 C -0.54 -31.66 9.11 25.60 0.23 -31.42 16 13 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 14 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 15 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 16 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 C 0.07 1.74 4.16 86.30 0.36 2.10 16 21 C -0.10 -2.87 2.48 -10.79 -0.03 -2.90 16 22 C -0.14 -3.10 9.19 71.99 0.66 -2.43 16 23 C -0.12 -3.44 8.93 71.98 0.64 -2.80 16 24 C -0.12 -2.55 7.89 22.27 0.18 -2.38 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 27 H 0.08 0.75 8.09 -2.38 -0.02 0.73 16 28 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 29 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 30 H 0.11 2.84 8.06 -2.91 -0.02 2.82 16 31 H 0.08 2.04 7.60 -2.39 -0.02 2.02 16 32 H 0.05 1.11 7.95 -2.39 -0.02 1.09 16 33 H 0.06 2.10 7.37 -2.39 -0.02 2.08 16 34 H 0.03 1.24 7.47 -2.39 -0.02 1.22 16 35 H 0.06 2.52 5.05 -2.38 -0.01 2.51 16 36 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 37 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 38 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 39 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 40 H 0.03 0.79 7.71 -2.39 -0.02 0.78 16 41 H 0.08 1.97 5.93 -2.38 -0.01 1.96 16 42 H 0.06 1.99 5.03 -2.39 -0.01 1.98 16 43 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.05 1.52 7.63 -2.39 -0.02 1.50 16 49 H 0.12 2.26 7.97 -2.91 -0.02 2.24 16 Total: -1.00 -65.35 384.68 4.65 -60.71 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.87 Total: 15.94 kcal Atomic # 6 Polarization: -52.00 SS G_CDS: 4.82 Total: -47.18 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: -3.07 Total: -76.76 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -65.35 4.65 -60.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608832861.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.642 kcal (2) G-P(sol) polarization free energy of solvation -65.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds