Wall clock time and date at job start Tue Mar 31 2020 06:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53004 * 109.47486 * 2 1 4 4 C 1.52999 * 109.47211 * 119.99905 * 2 1 3 5 5 N 1.46905 * 109.47022 * 65.85729 * 4 2 1 6 6 C 1.46901 * 110.99903 * 88.73482 * 5 4 2 7 7 C 1.53005 * 109.46996 * 289.65437 * 6 5 4 8 8 C 1.52995 * 109.46985 * 186.34097 * 7 6 5 9 9 C 1.50706 * 109.46774 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99975 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99752 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99902 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99988 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47183 * 90.00100 * 13 11 9 15 15 H 1.48500 * 109.46912 * 209.99648 * 13 11 9 16 16 H 1.48495 * 109.47339 * 329.99642 * 13 11 9 17 17 C 1.46907 * 110.99775 * 212.68520 * 5 4 2 18 18 C 1.53001 * 109.46799 * 66.04842 * 17 5 4 19 19 C 1.50701 * 109.46699 * 179.97438 * 18 17 5 20 20 C 1.38230 * 120.00403 * 89.99584 * 19 18 17 21 21 C 1.38229 * 120.00485 * 179.97438 * 20 19 18 22 22 C 1.38243 * 119.99650 * 359.97438 * 21 20 19 23 23 C 1.38226 * 120.00143 * 0.27450 * 22 21 20 24 24 C 1.38239 * 119.99958 * 359.51231 * 23 22 21 25 25 H 1.08999 * 109.47430 * 300.00298 * 1 2 3 26 26 H 1.09002 * 109.47451 * 60.00096 * 1 2 3 27 27 H 1.08998 * 109.47331 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47430 * 239.99702 * 2 1 3 29 29 H 1.08998 * 109.47440 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46697 * 300.00366 * 3 2 1 31 31 H 1.09003 * 109.46759 * 59.99890 * 3 2 1 32 32 H 1.09001 * 109.47298 * 305.85687 * 4 2 1 33 33 H 1.09003 * 109.47247 * 185.85582 * 4 2 1 34 34 H 1.09003 * 109.47268 * 49.65491 * 6 5 4 35 35 H 1.09002 * 109.46863 * 169.65808 * 6 5 4 36 36 H 1.09000 * 109.46841 * 306.34248 * 7 6 5 37 37 H 1.09008 * 109.46755 * 66.33959 * 7 6 5 38 38 H 1.09000 * 109.47455 * 299.99775 * 8 7 6 39 39 H 1.09000 * 109.47046 * 60.00768 * 8 7 6 40 40 H 0.96992 * 119.99899 * 180.02562 * 12 11 9 41 41 H 1.08994 * 109.47147 * 306.04431 * 17 5 4 42 42 H 1.08997 * 109.46436 * 186.04530 * 17 5 4 43 43 H 1.08993 * 109.47083 * 59.99915 * 18 17 5 44 44 H 1.08991 * 109.46932 * 299.99223 * 18 17 5 45 45 H 1.08005 * 120.00070 * 359.97438 * 20 19 18 46 46 H 1.07997 * 120.00687 * 180.02562 * 21 20 19 47 47 H 1.07998 * 119.99708 * 180.02562 * 22 21 20 48 48 H 1.07996 * 120.00374 * 179.72804 * 23 22 21 49 49 H 1.07997 * 120.00279 * 180.27554 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6690 -2.1410 1.1807 6 6 2.7023 -2.9222 0.4878 7 6 2.6960 -2.5690 -1.0010 8 6 3.6598 -3.4928 -1.7483 9 6 3.6531 -3.1454 -3.2147 10 1 3.0246 -2.3454 -3.5772 11 6 4.4501 -3.8481 -4.0933 12 7 4.4447 -3.5446 -5.3730 13 14 5.5377 -5.2313 -3.4661 14 1 4.7863 -6.5115 -3.5122 15 1 6.7473 -5.3364 -4.3211 16 1 5.9439 -4.9459 -2.0666 17 6 1.4101 -2.6828 2.5214 18 6 0.1691 -2.0106 3.1121 19 6 -0.0969 -2.5668 4.4872 20 6 0.4712 -1.9689 5.5965 21 6 0.2268 -2.4787 6.8579 22 6 -0.5862 -3.5864 7.0100 23 6 -1.1501 -4.1875 5.9003 24 6 -0.9093 -3.6750 4.6393 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.5935 -0.2715 2.1361 33 1 3.1249 -0.6313 1.3032 34 1 3.6791 -2.6899 0.9122 35 1 2.4967 -3.9856 0.6098 36 1 1.6895 -2.6946 -1.3999 37 1 3.0115 -1.5336 -1.1301 38 1 4.6664 -3.3672 -1.3494 39 1 3.3443 -4.5281 -1.6192 40 1 5.0050 -4.0392 -5.9911 41 1 2.2690 -2.4888 3.1638 42 1 1.2431 -3.7577 2.4527 43 1 -0.6897 -2.2046 2.4697 44 1 0.3361 -0.9357 3.1807 45 1 1.1060 -1.1032 5.4777 46 1 0.6702 -2.0113 7.7246 47 1 -0.7775 -3.9846 7.9955 48 1 -1.7817 -5.0555 6.0188 49 1 -1.3534 -4.1419 3.7727 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608832869.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:05 Heat of formation + Delta-G solvation = 2.074445 kcal Electronic energy + Delta-G solvation = -22933.013822 eV Core-core repulsion = 19858.925483 eV Total energy + Delta-G solvation = -3074.088338 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.60661 -38.39355 -34.68479 -34.19682 -32.78024 -31.36544 -31.08668 -28.58127 -26.92544 -26.84752 -25.45927 -23.02171 -22.76552 -21.41112 -20.84308 -20.25288 -19.31178 -17.01843 -16.63620 -16.03332 -15.65589 -15.28213 -14.81728 -14.60900 -14.13001 -13.93959 -13.83488 -13.60892 -13.34147 -13.09127 -12.96187 -12.63082 -12.52109 -12.32402 -12.03394 -11.71164 -11.57624 -11.39341 -11.34087 -11.15382 -11.12985 -10.98504 -10.72063 -10.61763 -10.41574 -10.32663 -9.70835 -9.58225 -9.41853 -9.12603 -9.09336 -8.85602 -8.49606 -8.07436 -6.00385 -3.97630 1.15415 1.19688 3.32935 3.40116 3.43972 3.56704 4.04065 4.48540 4.63868 4.72424 4.81278 4.93791 4.97233 5.07256 5.18286 5.24913 5.33003 5.33852 5.37239 5.44312 5.52210 5.56389 5.67457 5.73402 5.81746 5.83347 5.86850 5.89568 5.95658 5.99774 6.10456 6.11425 6.21560 6.23434 6.26428 6.30609 6.38420 6.47905 6.50817 6.59734 6.67535 6.76255 6.81261 7.03911 7.32865 7.34145 7.40867 7.53545 7.84904 8.59311 9.05526 9.62657 11.13250 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016476 B = 0.003271 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.039067 B = 8557.062154 C = 9730.934963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.109 4.109 3 C -0.146 4.146 4 C 0.059 3.941 5 N -0.536 5.536 6 C 0.055 3.945 7 C -0.100 4.100 8 C -0.014 4.014 9 C -0.516 4.516 10 H 0.072 0.928 11 C 0.065 3.935 12 N -0.905 5.905 13 Si 0.880 3.120 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.266 1.266 17 C 0.063 3.937 18 C -0.079 4.079 19 C -0.076 4.076 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.129 4.129 23 C -0.119 4.119 24 C -0.115 4.115 25 H 0.040 0.960 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.027 0.973 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.012 0.988 39 H 0.010 0.990 40 H 0.262 0.738 41 H 0.029 0.971 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.781 4.241 23.631 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.128 4.128 3 C -0.204 4.204 4 C -0.069 4.069 5 N -0.259 5.259 6 C -0.072 4.072 7 C -0.138 4.138 8 C -0.052 4.052 9 C -0.554 4.554 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.545 5.545 13 Si 0.707 3.293 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.191 1.191 17 C -0.065 4.065 18 C -0.116 4.116 19 C -0.076 4.076 20 C -0.137 4.137 21 C -0.138 4.138 22 C -0.147 4.147 23 C -0.137 4.137 24 C -0.133 4.133 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.030 0.970 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.128 4.149 23.191 25.644 hybrid contribution 1.421 -0.739 0.728 1.760 sum -8.706 3.410 23.919 25.681 Atomic orbital electron populations 1.21678 0.95171 1.02205 1.00013 1.21493 0.96414 0.95119 0.99759 1.21817 1.00848 0.96523 1.01185 1.22250 0.98124 0.88341 0.98142 1.62012 1.44824 1.02418 1.16665 1.22388 0.91269 0.97248 0.96341 1.21666 1.00886 1.00121 0.91106 1.19576 0.94506 0.94799 0.96351 1.21147 1.25190 1.18728 0.90315 0.91021 1.25039 0.96681 0.97122 0.94751 1.69920 1.40517 1.41579 1.02439 0.86782 0.80415 0.82897 0.79188 1.20342 1.21496 1.19117 1.22038 0.95742 0.99426 0.89309 1.20682 0.99287 0.99907 0.91750 1.19968 0.96653 0.95612 0.95384 1.21076 1.00011 1.00263 0.92313 1.21134 0.98703 0.96763 0.97225 1.21128 0.98311 0.96618 0.98656 1.21160 0.99966 0.99869 0.92737 1.21132 0.98606 0.96142 0.97469 0.94122 0.93657 0.91542 0.88425 0.92963 0.92617 0.93497 0.91815 0.94460 0.95428 0.91495 0.91878 0.92100 0.96991 0.97194 0.92833 0.95288 0.90841 0.89975 0.90902 0.86288 0.86288 0.86361 0.86182 0.85877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.09 37.15 0.34 -1.33 16 2 C -0.11 -1.48 2.78 -90.62 -0.25 -1.73 16 3 C -0.15 -1.75 9.19 37.16 0.34 -1.41 16 4 C 0.06 0.77 4.11 -3.82 -0.02 0.75 16 5 N -0.54 -7.41 3.90 -234.61 -0.91 -8.32 16 6 C 0.05 0.90 4.91 -3.82 -0.02 0.88 16 7 C -0.10 -1.98 4.01 -26.73 -0.11 -2.09 16 8 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 9 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 10 H 0.07 2.21 7.99 -52.49 -0.42 1.80 16 11 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 12 N -0.91 -28.25 13.96 55.43 0.77 -27.48 16 13 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 17 C 0.06 0.75 4.89 -3.82 -0.02 0.73 16 18 C -0.08 -0.81 5.32 -27.88 -0.15 -0.95 16 19 C -0.08 -0.76 5.13 -104.62 -0.54 -1.30 16 20 C -0.12 -1.13 9.70 -39.59 -0.38 -1.51 16 21 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 22 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 23 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 24 C -0.12 -1.12 9.70 -39.58 -0.38 -1.50 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.90 7.78 -51.93 -0.40 0.49 16 28 H 0.10 1.59 4.49 -51.93 -0.23 1.36 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.73 5.82 -51.93 -0.30 0.43 16 33 H 0.04 0.51 7.57 -51.93 -0.39 0.12 16 34 H 0.03 0.45 7.78 -51.93 -0.40 0.05 16 35 H 0.07 1.09 7.84 -51.93 -0.41 0.68 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.06 1.21 5.60 -51.92 -0.29 0.92 16 38 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 39 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 42 H 0.07 0.89 7.88 -51.93 -0.41 0.48 16 43 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 44 H 0.07 0.72 6.22 -51.93 -0.32 0.40 16 45 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 46 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 47 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 48 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 49 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 381.64 15.07 5.75 5.75 Total: -1.00 -30.57 381.64 -10.99 -41.56 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -9.01 Total: -1.20 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -2.92 Total: -27.68 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.14 Total: -35.80 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.57 -10.99 -41.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608832869.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.636 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds