Wall clock time and date at job start Tue Mar 31 2020 06:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53004 * 109.47486 * 2 1 4 4 C 1.52999 * 109.47211 * 119.99905 * 2 1 3 5 5 N 1.46905 * 109.47022 * 65.85729 * 4 2 1 6 6 C 1.46901 * 110.99903 * 88.73482 * 5 4 2 7 7 C 1.53005 * 109.46996 * 289.65437 * 6 5 4 8 8 C 1.52995 * 109.46985 * 186.34097 * 7 6 5 9 9 C 1.50706 * 109.46774 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99975 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99752 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99902 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99988 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47183 * 90.00100 * 13 11 9 15 15 H 1.48500 * 109.46912 * 209.99648 * 13 11 9 16 16 H 1.48495 * 109.47339 * 329.99642 * 13 11 9 17 17 C 1.46907 * 110.99775 * 212.68520 * 5 4 2 18 18 C 1.53001 * 109.46799 * 66.04842 * 17 5 4 19 19 C 1.50701 * 109.46699 * 179.97438 * 18 17 5 20 20 C 1.38230 * 120.00403 * 89.99584 * 19 18 17 21 21 C 1.38229 * 120.00485 * 179.97438 * 20 19 18 22 22 C 1.38243 * 119.99650 * 359.97438 * 21 20 19 23 23 C 1.38226 * 120.00143 * 0.27450 * 22 21 20 24 24 C 1.38239 * 119.99958 * 359.51231 * 23 22 21 25 25 H 1.08999 * 109.47430 * 300.00298 * 1 2 3 26 26 H 1.09002 * 109.47451 * 60.00096 * 1 2 3 27 27 H 1.08998 * 109.47331 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47430 * 239.99702 * 2 1 3 29 29 H 1.08998 * 109.47440 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46697 * 300.00366 * 3 2 1 31 31 H 1.09003 * 109.46759 * 59.99890 * 3 2 1 32 32 H 1.09001 * 109.47298 * 305.85687 * 4 2 1 33 33 H 1.09003 * 109.47247 * 185.85582 * 4 2 1 34 34 H 1.09003 * 109.47268 * 49.65491 * 6 5 4 35 35 H 1.09002 * 109.46863 * 169.65808 * 6 5 4 36 36 H 1.09000 * 109.46841 * 306.34248 * 7 6 5 37 37 H 1.09008 * 109.46755 * 66.33959 * 7 6 5 38 38 H 1.09000 * 109.47455 * 299.99775 * 8 7 6 39 39 H 1.09000 * 109.47046 * 60.00768 * 8 7 6 40 40 H 0.96992 * 119.99899 * 180.02562 * 12 11 9 41 41 H 1.08994 * 109.47147 * 306.04431 * 17 5 4 42 42 H 1.08997 * 109.46436 * 186.04530 * 17 5 4 43 43 H 1.08993 * 109.47083 * 59.99915 * 18 17 5 44 44 H 1.08991 * 109.46932 * 299.99223 * 18 17 5 45 45 H 1.08005 * 120.00070 * 359.97438 * 20 19 18 46 46 H 1.07997 * 120.00687 * 180.02562 * 21 20 19 47 47 H 1.07998 * 119.99708 * 180.02562 * 22 21 20 48 48 H 1.07996 * 120.00374 * 179.72804 * 23 22 21 49 49 H 1.07997 * 120.00279 * 180.27554 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6690 -2.1410 1.1807 6 6 2.7023 -2.9222 0.4878 7 6 2.6960 -2.5690 -1.0010 8 6 3.6598 -3.4928 -1.7483 9 6 3.6531 -3.1454 -3.2147 10 1 3.0246 -2.3454 -3.5772 11 6 4.4501 -3.8481 -4.0933 12 7 4.4447 -3.5446 -5.3730 13 14 5.5377 -5.2313 -3.4661 14 1 4.7863 -6.5115 -3.5122 15 1 6.7473 -5.3364 -4.3211 16 1 5.9439 -4.9459 -2.0666 17 6 1.4101 -2.6828 2.5214 18 6 0.1691 -2.0106 3.1121 19 6 -0.0969 -2.5668 4.4872 20 6 0.4712 -1.9689 5.5965 21 6 0.2268 -2.4787 6.8579 22 6 -0.5862 -3.5864 7.0100 23 6 -1.1501 -4.1875 5.9003 24 6 -0.9093 -3.6750 4.6393 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.5935 -0.2715 2.1361 33 1 3.1249 -0.6313 1.3032 34 1 3.6791 -2.6899 0.9122 35 1 2.4967 -3.9856 0.6098 36 1 1.6895 -2.6946 -1.3999 37 1 3.0115 -1.5336 -1.1301 38 1 4.6664 -3.3672 -1.3494 39 1 3.3443 -4.5281 -1.6192 40 1 5.0050 -4.0392 -5.9911 41 1 2.2690 -2.4888 3.1638 42 1 1.2431 -3.7577 2.4527 43 1 -0.6897 -2.2046 2.4697 44 1 0.3361 -0.9357 3.1807 45 1 1.1060 -1.1032 5.4777 46 1 0.6702 -2.0113 7.7246 47 1 -0.7775 -3.9846 7.9955 48 1 -1.7817 -5.0555 6.0188 49 1 -1.3534 -4.1419 3.7727 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608832869.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:05 Heat of formation + Delta-G solvation = -12.624757 kcal Electronic energy + Delta-G solvation = -22933.651227 eV Core-core repulsion = 19858.925483 eV Total energy + Delta-G solvation = -3074.725744 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.36428 -39.43416 -35.92675 -35.65172 -34.27174 -32.95455 -31.72913 -29.75305 -28.30443 -27.86759 -26.66187 -24.39746 -23.41729 -22.72345 -21.75877 -21.63228 -20.53680 -18.86792 -17.68555 -17.13512 -16.58828 -16.25053 -16.09299 -15.68303 -15.60994 -15.21662 -14.96823 -14.75493 -14.35861 -14.17810 -13.94162 -13.87958 -13.75310 -13.56698 -13.26991 -12.97610 -12.83866 -12.63715 -12.47139 -12.40217 -12.20110 -12.01386 -11.86823 -11.75345 -11.67611 -11.61209 -11.46343 -11.32187 -11.22894 -10.81773 -10.68417 -9.78472 -9.56613 -9.18621 -8.28258 -6.31860 0.48042 0.53804 1.35489 1.37239 1.49395 2.36746 2.83062 3.02551 3.06985 3.90834 3.94207 4.03600 4.11325 4.17201 4.22629 4.26324 4.33621 4.35586 4.37019 4.48560 4.61473 4.64845 4.69802 4.71891 4.75213 4.78494 4.82998 4.90349 4.92627 5.02256 5.05843 5.10793 5.12026 5.15366 5.19587 5.23694 5.29494 5.37741 5.49027 5.58621 5.61819 5.64479 5.66495 5.68124 5.72369 5.78608 6.16068 6.19876 6.27834 6.33457 6.76347 7.32462 8.88801 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016476 B = 0.003271 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.039067 B = 8557.062154 C = 9730.934963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.111 4.111 3 C -0.142 4.142 4 C 0.063 3.937 5 N -0.540 5.540 6 C 0.065 3.935 7 C -0.087 4.087 8 C -0.011 4.011 9 C -0.529 4.529 10 H 0.030 0.970 11 C 0.002 3.998 12 N -0.953 5.953 13 Si 0.952 3.048 14 H -0.266 1.266 15 H -0.284 1.284 16 H -0.247 1.247 17 C 0.067 3.933 18 C -0.067 4.067 19 C -0.089 4.089 20 C -0.129 4.129 21 C -0.127 4.127 22 C -0.134 4.134 23 C -0.128 4.128 24 C -0.130 4.130 25 H 0.060 0.940 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.030 0.970 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.016 0.984 39 H 0.017 0.983 40 H 0.266 0.734 41 H 0.032 0.968 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.129 0.871 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.136 0.864 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.628 3.664 26.749 28.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.130 4.130 3 C -0.200 4.200 4 C -0.065 4.065 5 N -0.264 5.264 6 C -0.062 4.062 7 C -0.125 4.125 8 C -0.049 4.049 9 C -0.567 4.567 10 H 0.048 0.952 11 C -0.195 4.195 12 N -0.594 5.594 13 Si 0.775 3.225 14 H -0.191 1.191 15 H -0.210 1.210 16 H -0.171 1.171 17 C -0.060 4.060 18 C -0.105 4.105 19 C -0.089 4.089 20 C -0.147 4.147 21 C -0.145 4.145 22 C -0.152 4.152 23 C -0.146 4.146 24 C -0.148 4.148 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.050 0.950 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.146 0.854 46 H 0.156 0.844 47 H 0.157 0.843 48 H 0.154 0.846 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.991 3.582 26.329 28.388 hybrid contribution 1.290 -0.489 -0.263 1.405 sum -8.700 3.093 26.066 27.653 Atomic orbital electron populations 1.21609 0.94379 1.01610 1.00836 1.21449 0.97088 0.95857 0.98608 1.21779 1.00529 0.95582 1.02118 1.22251 0.97832 0.87813 0.98595 1.61927 1.43765 1.02710 1.17980 1.22138 0.92323 0.97824 0.93956 1.21463 0.98769 0.98916 0.93364 1.19524 0.95811 0.95938 0.93639 1.21492 1.24382 1.17616 0.93175 0.95203 1.26046 0.98416 1.00208 0.94793 1.70078 1.41901 1.43357 1.04068 0.85631 0.78213 0.79178 0.79448 1.19133 1.20986 1.17052 1.22041 0.96632 0.99340 0.88036 1.20539 0.98116 0.99966 0.91845 1.19987 0.97478 0.96160 0.95315 1.21279 1.00213 1.00697 0.92536 1.21437 0.98592 0.96844 0.97649 1.21459 0.97761 0.96428 0.99570 1.21434 1.00153 1.00436 0.92566 1.21302 0.98952 0.96387 0.98157 0.92117 0.93973 0.92823 0.91905 0.93446 0.92873 0.91358 0.89601 0.95138 0.95073 0.91082 0.93388 0.92673 0.96536 0.96513 0.92560 0.94965 0.91192 0.90527 0.90368 0.85351 0.84386 0.84306 0.84567 0.85616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.09 71.98 0.65 -2.44 16 2 C -0.11 -2.97 2.78 -10.80 -0.03 -3.00 16 3 C -0.14 -3.28 9.19 71.98 0.66 -2.62 16 4 C 0.06 1.54 4.11 86.30 0.35 1.90 16 5 N -0.54 -14.35 3.90 -896.18 -3.49 -17.85 16 6 C 0.07 2.08 4.91 86.30 0.42 2.50 16 7 C -0.09 -3.51 4.01 30.59 0.12 -3.38 16 8 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 9 C -0.53 -31.37 9.66 25.60 0.25 -31.12 16 10 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 11 C 0.00 0.10 5.47 84.65 0.46 0.56 16 12 N -0.95 -61.10 13.96 21.45 0.30 -60.80 16 13 Si 0.95 45.19 27.47 68.60 1.88 47.07 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 15 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 16 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 17 C 0.07 1.48 4.89 86.30 0.42 1.90 16 18 C -0.07 -1.26 5.32 29.85 0.16 -1.10 16 19 C -0.09 -1.64 5.13 -19.87 -0.10 -1.74 16 20 C -0.13 -2.19 9.70 22.27 0.22 -1.97 16 21 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 22 C -0.13 -1.96 10.05 22.27 0.22 -1.73 16 23 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 24 C -0.13 -2.34 9.70 22.27 0.22 -2.12 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 1.43 7.78 -2.39 -0.02 1.41 16 28 H 0.06 2.13 4.49 -2.39 -0.01 2.12 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.74 5.82 -2.39 -0.01 1.73 16 33 H 0.03 0.80 7.57 -2.39 -0.02 0.78 16 34 H 0.03 0.97 7.78 -2.39 -0.02 0.95 16 35 H 0.07 2.20 7.84 -2.39 -0.02 2.18 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.05 2.27 5.60 -2.38 -0.01 2.26 16 38 H 0.02 0.77 7.20 -2.39 -0.02 0.75 16 39 H 0.02 0.77 7.57 -2.39 -0.02 0.76 16 40 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 41 H 0.03 0.70 8.12 -2.39 -0.02 0.68 16 42 H 0.07 1.60 7.88 -2.39 -0.02 1.58 16 43 H 0.08 1.52 8.08 -2.39 -0.02 1.50 16 44 H 0.08 1.36 6.22 -2.39 -0.01 1.35 16 45 H 0.13 1.84 8.06 -2.91 -0.02 1.81 16 46 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 47 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 48 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 49 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -66.99 381.64 4.11 -62.88 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.82 Total: 16.97 kcal Atomic # 6 Polarization: -52.87 SS G_CDS: 4.60 Total: -48.27 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -3.19 Total: -78.65 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.07 kcal Total: -66.99 4.11 -62.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608832869.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.256 kcal (2) G-P(sol) polarization free energy of solvation -66.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds