Wall clock time and date at job start Tue Mar 31 2020 05:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00164 * 179.76476 * 5 4 2 7 7 C 1.38232 * 119.99658 * 0.48819 * 6 5 4 8 8 C 1.50699 * 119.99950 * 179.76917 * 7 6 5 9 9 C 1.53000 * 109.47411 * 120.01985 * 8 7 6 10 10 C 1.53002 * 109.47058 * 240.01736 * 8 7 6 11 11 N 1.46896 * 109.47138 * 0.02562 * 8 7 6 12 12 C 1.46901 * 111.00245 * 180.02562 * 11 8 7 13 13 C 1.52996 * 109.47482 * 180.02562 * 12 11 8 14 14 C 1.52996 * 109.47421 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47343 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99831 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99981 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99919 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46764 * 90.00197 * 19 17 15 21 21 H 1.48498 * 109.46994 * 209.99911 * 19 17 15 22 22 H 1.48496 * 109.47504 * 330.00084 * 19 17 15 23 23 C 1.38238 * 120.00261 * 359.78461 * 7 6 5 24 24 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 33 33 H 1.08001 * 120.00084 * 180.24925 * 6 5 4 34 34 H 1.09002 * 109.47398 * 59.99849 * 9 8 7 35 35 H 1.09001 * 109.47194 * 180.02562 * 9 8 7 36 36 H 1.09000 * 109.46968 * 299.99831 * 9 8 7 37 37 H 1.09004 * 109.47006 * 59.99732 * 10 8 7 38 38 H 1.09001 * 109.47142 * 179.97438 * 10 8 7 39 39 H 1.09002 * 109.47554 * 300.00024 * 10 8 7 40 40 H 1.00901 * 111.00018 * 56.04932 * 11 8 7 41 41 H 1.09004 * 109.46958 * 299.99736 * 12 11 8 42 42 H 1.08997 * 109.47154 * 60.00097 * 12 11 8 43 43 H 1.09007 * 109.47047 * 299.99648 * 13 12 11 44 44 H 1.09005 * 109.47539 * 59.99283 * 13 12 11 45 45 H 1.09004 * 109.47051 * 299.99438 * 14 13 12 46 46 H 1.08997 * 109.47122 * 59.99837 * 14 13 12 47 47 H 0.96997 * 119.99899 * 180.02562 * 18 17 15 48 48 H 1.08003 * 120.00252 * 179.97438 * 23 7 6 49 49 H 1.07991 * 120.00142 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1584 -0.8901 -3.6147 7 6 2.9535 -2.0138 -3.4879 8 6 3.4559 -2.7241 -4.7184 9 6 4.9859 -2.7241 -4.7184 10 6 2.9460 -4.1666 -4.7184 11 7 2.9664 -2.0315 -5.9178 12 6 3.4370 -2.6979 -7.1395 13 6 2.9087 -1.9492 -8.3647 14 6 3.3993 -2.6428 -9.6370 15 6 2.8783 -1.9057 -10.8439 16 1 2.2595 -1.0297 -10.7161 17 6 3.1925 -2.3489 -12.1111 18 7 2.7383 -1.7053 -13.1643 19 14 4.2646 -3.8626 -12.3320 20 1 3.4060 -5.0728 -12.3910 21 1 5.0372 -3.7419 -13.5944 22 1 5.2026 -3.9765 -11.1865 23 6 3.2875 -2.4861 -2.2324 24 6 2.8271 -1.8343 -1.1037 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.0688 0.6339 -2.5850 33 1 1.8972 -0.5213 -4.5956 34 1 5.3493 -3.2380 -3.8284 35 1 5.3493 -3.2375 -5.6086 36 1 5.3492 -1.6964 -4.7184 37 1 1.8560 -4.1667 -4.7184 38 1 3.3090 -4.6803 -5.6087 39 1 3.3093 -4.6806 -3.8285 40 1 3.2360 -1.0592 -5.9092 41 1 4.5269 -2.6981 -7.1564 42 1 3.0731 -3.7251 -7.1562 43 1 1.8187 -1.9485 -8.3480 44 1 3.2728 -0.9219 -8.3478 45 1 4.4892 -2.6430 -9.6535 46 1 3.0354 -3.6701 -9.6542 47 1 2.9591 -2.0173 -14.0558 48 1 3.9084 -3.3643 -2.1333 49 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609358215.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:48 Heat of formation + Delta-G solvation = -4.461320 kcal Electronic energy + Delta-G solvation = -22734.477310 eV Core-core repulsion = 19660.105560 eV Total energy + Delta-G solvation = -3074.371750 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.16888 -38.02497 -35.42263 -33.97512 -32.21637 -31.14565 -30.11649 -28.83034 -27.41949 -27.35028 -26.43057 -23.95615 -22.50747 -22.18359 -20.43481 -20.12668 -19.18318 -17.02447 -16.50843 -15.99807 -15.25572 -15.01990 -14.61932 -14.44140 -14.14695 -14.02513 -13.84292 -13.68203 -13.42330 -13.16307 -12.91596 -12.70168 -12.57523 -12.51160 -12.10348 -12.03600 -11.80165 -11.61098 -11.41744 -11.32864 -11.27318 -11.19522 -10.84911 -10.78312 -10.70771 -10.48684 -9.90931 -9.69319 -9.55456 -9.14647 -8.93459 -8.58708 -8.51204 -8.18606 -6.01600 -3.99122 1.28901 1.39052 3.32082 3.39169 3.42780 3.69652 4.23588 4.41372 4.47317 4.55807 4.66002 4.92106 4.93409 4.98276 5.08790 5.11574 5.17882 5.32314 5.33965 5.38546 5.43443 5.51795 5.55046 5.59595 5.62645 5.68814 5.71853 5.79063 5.81763 5.86641 5.94787 5.96434 5.98528 6.04265 6.07540 6.24018 6.29263 6.41665 6.51667 6.56978 6.60064 6.70190 6.94959 6.97493 7.27808 7.37902 7.46830 7.58499 7.83258 8.57870 9.04120 9.61138 11.12030 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.028397 B = 0.002687 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.793770 B =10417.311792 C =11023.489129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.085 4.085 5 C -0.116 4.116 6 C -0.100 4.100 7 C -0.069 4.069 8 C 0.148 3.852 9 C -0.178 4.178 10 C -0.135 4.135 11 N -0.678 5.678 12 C 0.051 3.949 13 C -0.099 4.099 14 C -0.012 4.012 15 C -0.518 4.518 16 H 0.071 0.929 17 C 0.064 3.936 18 N -0.905 5.905 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.266 1.266 23 C -0.114 4.114 24 C -0.121 4.121 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.118 0.882 33 H 0.135 0.865 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.339 0.661 41 H 0.029 0.971 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.050 0.950 45 H 0.013 0.987 46 H 0.011 0.989 47 H 0.262 0.738 48 H 0.117 0.883 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 0.545 28.833 28.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 C -0.201 4.201 4 C -0.085 4.085 5 C -0.134 4.134 6 C -0.118 4.118 7 C -0.069 4.069 8 C 0.056 3.944 9 C -0.237 4.237 10 C -0.193 4.193 11 N -0.309 5.309 12 C -0.077 4.077 13 C -0.137 4.137 14 C -0.050 4.050 15 C -0.556 4.556 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.544 5.544 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.132 4.132 24 C -0.139 4.139 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.136 0.864 33 H 0.152 0.848 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.158 0.842 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.031 0.969 46 H 0.029 0.971 47 H 0.072 0.928 48 H 0.135 0.865 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.090 0.222 28.626 28.627 hybrid contribution 1.522 -0.550 -0.331 1.652 sum 1.432 -0.328 28.295 28.333 Atomic orbital electron populations 1.21858 0.94397 1.02013 1.01882 1.20105 0.95919 0.95978 0.95417 1.21856 1.01180 0.95207 1.01887 1.19813 0.98131 0.95935 0.94591 1.20981 1.00371 1.00106 0.91898 1.21157 0.96580 0.94954 0.99142 1.19770 0.97769 0.95684 0.93704 1.19734 0.91983 0.94225 0.88419 1.22560 0.96458 1.02197 1.02457 1.21883 1.02130 0.93678 1.01587 1.60774 1.63135 1.06026 1.00968 1.22254 0.97106 0.99122 0.89194 1.21438 1.00887 0.98561 0.92821 1.19536 0.96078 0.95929 0.93495 1.21158 1.31835 1.13358 0.89219 0.91045 1.25049 0.95739 0.96844 0.96017 1.69922 1.45940 1.40444 0.98117 0.86765 0.81195 0.83704 0.77523 1.20313 1.21459 1.19101 1.20895 1.00430 0.99970 0.91908 1.20931 0.98889 0.95924 0.98176 0.92563 0.92568 0.92324 0.90795 0.92613 0.92349 0.92554 0.86372 0.84756 0.92248 0.91622 0.92609 0.91696 0.91919 0.92587 0.84205 0.95327 0.91118 0.92010 0.93131 0.96912 0.97103 0.92803 0.86452 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.00 37.16 0.33 -0.69 16 2 C -0.06 -0.42 3.09 -91.77 -0.28 -0.71 16 3 C -0.14 -1.01 9.01 37.16 0.33 -0.67 16 4 C -0.08 -0.81 4.78 -104.62 -0.50 -1.31 16 5 C -0.12 -1.20 8.71 -39.58 -0.34 -1.55 16 6 C -0.10 -1.17 9.14 -39.58 -0.36 -1.53 16 7 C -0.07 -0.80 4.77 -104.62 -0.50 -1.29 16 8 C 0.15 1.77 0.79 -132.75 -0.11 1.66 16 9 C -0.18 -2.00 8.04 37.16 0.30 -1.70 16 10 C -0.14 -1.58 8.05 37.16 0.30 -1.28 16 11 N -0.68 -9.36 5.10 -101.14 -0.52 -9.87 16 12 C 0.05 0.83 4.90 -3.83 -0.02 0.81 16 13 C -0.10 -1.97 5.41 -26.73 -0.14 -2.11 16 14 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 15 C -0.52 -15.00 9.66 -34.44 -0.33 -15.34 16 16 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 17 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 18 N -0.90 -28.32 13.96 55.43 0.77 -27.54 16 19 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 23 C -0.11 -1.18 8.71 -39.58 -0.34 -1.52 16 24 C -0.12 -1.17 9.67 -39.58 -0.38 -1.55 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.43 7.37 -51.93 -0.38 0.05 16 28 H 0.07 0.51 7.88 -51.93 -0.41 0.10 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.42 7.41 -51.93 -0.38 0.03 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.12 1.08 7.10 -52.48 -0.37 0.71 16 33 H 0.13 1.60 6.41 -52.49 -0.34 1.26 16 34 H 0.06 0.58 7.39 -51.93 -0.38 0.20 16 35 H 0.06 0.78 6.40 -51.93 -0.33 0.45 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.76 6.40 -51.93 -0.33 0.42 16 39 H 0.06 0.55 7.39 -51.93 -0.38 0.17 16 40 H 0.34 4.51 7.55 -39.29 -0.30 4.21 16 41 H 0.03 0.45 6.30 -51.93 -0.33 0.13 16 42 H 0.07 1.14 6.30 -51.93 -0.33 0.82 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 46 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 47 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 48 H 0.12 1.05 7.10 -52.48 -0.37 0.68 16 49 H 0.12 0.90 7.95 -52.49 -0.42 0.49 16 LS Contribution 375.71 15.07 5.66 5.66 Total: -1.00 -30.68 375.71 -9.81 -40.48 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -8.79 Total: 1.32 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: -2.26 Total: -27.40 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.26 Total: -37.42 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.68 -9.81 -40.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609358215.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.022 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds