Wall clock time and date at job start Tue Mar 31 2020 05:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00164 * 179.76476 * 5 4 2 7 7 C 1.38232 * 119.99658 * 0.48819 * 6 5 4 8 8 C 1.50699 * 119.99950 * 179.76917 * 7 6 5 9 9 C 1.53000 * 109.47411 * 120.01985 * 8 7 6 10 10 C 1.53002 * 109.47058 * 240.01736 * 8 7 6 11 11 N 1.46896 * 109.47138 * 0.02562 * 8 7 6 12 12 C 1.46901 * 111.00245 * 180.02562 * 11 8 7 13 13 C 1.52996 * 109.47482 * 180.02562 * 12 11 8 14 14 C 1.52996 * 109.47421 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47343 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99831 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99981 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99919 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46764 * 90.00197 * 19 17 15 21 21 H 1.48498 * 109.46994 * 209.99911 * 19 17 15 22 22 H 1.48496 * 109.47504 * 330.00084 * 19 17 15 23 23 C 1.38238 * 120.00261 * 359.78461 * 7 6 5 24 24 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 33 33 H 1.08001 * 120.00084 * 180.24925 * 6 5 4 34 34 H 1.09002 * 109.47398 * 59.99849 * 9 8 7 35 35 H 1.09001 * 109.47194 * 180.02562 * 9 8 7 36 36 H 1.09000 * 109.46968 * 299.99831 * 9 8 7 37 37 H 1.09004 * 109.47006 * 59.99732 * 10 8 7 38 38 H 1.09001 * 109.47142 * 179.97438 * 10 8 7 39 39 H 1.09002 * 109.47554 * 300.00024 * 10 8 7 40 40 H 1.00901 * 111.00018 * 56.04932 * 11 8 7 41 41 H 1.09004 * 109.46958 * 299.99736 * 12 11 8 42 42 H 1.08997 * 109.47154 * 60.00097 * 12 11 8 43 43 H 1.09007 * 109.47047 * 299.99648 * 13 12 11 44 44 H 1.09005 * 109.47539 * 59.99283 * 13 12 11 45 45 H 1.09004 * 109.47051 * 299.99438 * 14 13 12 46 46 H 1.08997 * 109.47122 * 59.99837 * 14 13 12 47 47 H 0.96997 * 119.99899 * 180.02562 * 18 17 15 48 48 H 1.08003 * 120.00252 * 179.97438 * 23 7 6 49 49 H 1.07991 * 120.00142 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1584 -0.8901 -3.6147 7 6 2.9535 -2.0138 -3.4879 8 6 3.4559 -2.7241 -4.7184 9 6 4.9859 -2.7241 -4.7184 10 6 2.9460 -4.1666 -4.7184 11 7 2.9664 -2.0315 -5.9178 12 6 3.4370 -2.6979 -7.1395 13 6 2.9087 -1.9492 -8.3647 14 6 3.3993 -2.6428 -9.6370 15 6 2.8783 -1.9057 -10.8439 16 1 2.2595 -1.0297 -10.7161 17 6 3.1925 -2.3489 -12.1111 18 7 2.7383 -1.7053 -13.1643 19 14 4.2646 -3.8626 -12.3320 20 1 3.4060 -5.0728 -12.3910 21 1 5.0372 -3.7419 -13.5944 22 1 5.2026 -3.9765 -11.1865 23 6 3.2875 -2.4861 -2.2324 24 6 2.8271 -1.8343 -1.1037 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.0688 0.6339 -2.5850 33 1 1.8972 -0.5213 -4.5956 34 1 5.3493 -3.2380 -3.8284 35 1 5.3493 -3.2375 -5.6086 36 1 5.3492 -1.6964 -4.7184 37 1 1.8560 -4.1667 -4.7184 38 1 3.3090 -4.6803 -5.6087 39 1 3.3093 -4.6806 -3.8285 40 1 3.2360 -1.0592 -5.9092 41 1 4.5269 -2.6981 -7.1564 42 1 3.0731 -3.7251 -7.1562 43 1 1.8187 -1.9485 -8.3480 44 1 3.2728 -0.9219 -8.3478 45 1 4.4892 -2.6430 -9.6535 46 1 3.0354 -3.6701 -9.6542 47 1 2.9591 -2.0173 -14.0558 48 1 3.9084 -3.3643 -2.1333 49 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609358215.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:48 Heat of formation + Delta-G solvation = -20.108692 kcal Electronic energy + Delta-G solvation = -22735.155831 eV Core-core repulsion = 19660.105560 eV Total energy + Delta-G solvation = -3075.050271 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.99786 -38.95249 -36.49457 -35.46490 -34.01153 -32.09417 -31.42297 -29.66629 -28.31621 -28.02788 -27.96111 -25.06184 -23.59873 -23.27761 -21.87149 -21.18679 -20.07128 -18.92685 -17.71544 -16.84191 -16.48663 -16.26359 -15.89756 -15.41532 -15.35841 -15.01758 -14.75547 -14.60119 -14.47139 -14.19731 -14.07625 -13.91763 -13.75239 -13.56488 -13.21277 -13.01416 -12.86764 -12.78285 -12.61762 -12.46324 -12.18823 -12.06629 -12.01463 -11.90352 -11.74882 -11.56443 -11.46022 -11.36148 -11.28267 -11.23073 -10.76335 -9.72951 -9.44740 -9.21555 -8.29378 -6.33610 0.50058 0.59596 1.35690 1.37685 1.49853 2.36382 2.90455 3.05790 3.15596 3.66770 3.86503 3.93921 4.09720 4.15420 4.23077 4.25498 4.32389 4.35610 4.41944 4.55717 4.61947 4.65533 4.67134 4.71456 4.79321 4.82222 4.86334 4.93319 4.96683 5.01256 5.01386 5.02442 5.11886 5.12351 5.21222 5.25929 5.29639 5.35337 5.38899 5.40110 5.52240 5.60080 5.65209 5.66744 5.74816 5.82879 6.16688 6.23211 6.30949 6.47017 6.74748 7.30857 8.87718 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.028397 B = 0.002687 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.793770 B =10417.311792 C =11023.489129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.055 4.055 3 C -0.143 4.143 4 C -0.086 4.086 5 C -0.124 4.124 6 C -0.118 4.118 7 C -0.081 4.081 8 C 0.149 3.851 9 C -0.173 4.173 10 C -0.134 4.134 11 N -0.683 5.683 12 C 0.067 3.933 13 C -0.090 4.090 14 C -0.009 4.009 15 C -0.533 4.533 16 H 0.028 0.972 17 C 0.000 4.000 18 N -0.953 5.953 19 Si 0.955 3.045 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.245 1.245 23 C -0.116 4.116 24 C -0.125 4.125 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.341 0.659 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.044 0.956 45 H 0.020 0.980 46 H 0.019 0.981 47 H 0.266 0.734 48 H 0.134 0.866 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.902 -1.118 31.397 31.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 C -0.200 4.200 4 C -0.087 4.087 5 C -0.142 4.142 6 C -0.136 4.136 7 C -0.081 4.081 8 C 0.058 3.942 9 C -0.232 4.232 10 C -0.191 4.191 11 N -0.314 5.314 12 C -0.062 4.062 13 C -0.128 4.128 14 C -0.047 4.047 15 C -0.571 4.571 16 H 0.047 0.953 17 C -0.196 4.196 18 N -0.594 5.594 19 Si 0.778 3.222 20 H -0.191 1.191 21 H -0.210 1.210 22 H -0.168 1.168 23 C -0.135 4.135 24 C -0.143 4.143 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.160 0.840 41 H 0.054 0.946 42 H 0.092 0.908 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.038 0.962 46 H 0.037 0.963 47 H 0.075 0.925 48 H 0.152 0.848 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.286 -1.434 31.219 31.278 hybrid contribution 0.998 0.086 -1.085 1.477 sum 2.285 -1.348 30.133 30.250 Atomic orbital electron populations 1.21848 0.94089 1.01807 1.02295 1.20151 0.96129 0.96168 0.94839 1.21843 1.00916 0.94926 1.02304 1.20090 0.97639 0.95965 0.94956 1.21108 1.00567 1.00390 0.92099 1.21178 0.97577 0.95729 0.99142 1.19773 0.98411 0.95896 0.94038 1.19775 0.92595 0.94202 0.87612 1.22508 0.95606 1.02096 1.03010 1.21882 1.01284 0.93573 1.02390 1.60699 1.63506 1.06225 1.00982 1.21967 0.97239 0.98574 0.88408 1.21258 0.99938 0.98457 0.93166 1.19479 0.96202 0.95899 0.93119 1.21524 1.31366 1.12591 0.91611 0.95345 1.26091 0.97387 1.00687 0.95482 1.70083 1.47769 1.42721 0.98862 0.85593 0.79437 0.78988 0.78228 1.19100 1.20968 1.16811 1.21092 1.00445 1.00453 0.91482 1.21242 0.98332 0.95650 0.99038 0.93063 0.91173 0.92940 0.89637 0.92990 0.92920 0.91197 0.85787 0.85882 0.90489 0.92207 0.93042 0.93000 0.92345 0.90544 0.84018 0.94592 0.90836 0.93462 0.93715 0.96203 0.96301 0.92517 0.84839 0.84395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.00 71.98 0.65 -1.15 16 2 C -0.05 -0.72 3.09 -11.54 -0.04 -0.76 16 3 C -0.14 -1.75 9.01 71.98 0.65 -1.10 16 4 C -0.09 -1.53 4.78 -19.87 -0.09 -1.62 16 5 C -0.12 -2.51 8.71 22.27 0.19 -2.32 16 6 C -0.12 -2.73 9.14 22.27 0.20 -2.53 16 7 C -0.08 -1.77 4.77 -19.87 -0.09 -1.86 16 8 C 0.15 3.36 0.79 2.78 0.00 3.36 16 9 C -0.17 -3.54 8.04 71.98 0.58 -2.96 16 10 C -0.13 -2.89 8.05 71.98 0.58 -2.31 16 11 N -0.68 -18.50 5.10 -473.90 -2.42 -20.92 16 12 C 0.07 2.07 4.90 86.30 0.42 2.50 16 13 C -0.09 -3.60 5.41 30.59 0.17 -3.43 16 14 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 15 C -0.53 -31.68 9.66 25.60 0.25 -31.43 16 16 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 17 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 18 N -0.95 -61.18 13.96 21.45 0.30 -60.88 16 19 Si 0.95 44.93 27.47 68.60 1.88 46.82 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.24 -10.59 6.54 99.48 0.65 -9.94 16 23 C -0.12 -2.15 8.71 22.27 0.19 -1.96 16 24 C -0.12 -2.12 9.67 22.27 0.22 -1.90 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.72 7.37 -2.39 -0.02 0.70 16 28 H 0.09 0.95 7.88 -2.39 -0.02 0.93 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.70 7.41 -2.39 -0.02 0.68 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.12 2.26 7.10 -2.91 -0.02 2.24 16 33 H 0.12 3.03 6.41 -2.91 -0.02 3.01 16 34 H 0.08 1.29 7.39 -2.39 -0.02 1.27 16 35 H 0.06 1.29 6.40 -2.39 -0.02 1.27 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.06 1.30 6.40 -2.39 -0.02 1.28 16 39 H 0.08 1.31 7.39 -2.39 -0.02 1.29 16 40 H 0.34 9.06 7.55 -89.69 -0.68 8.38 16 41 H 0.04 1.07 6.30 -2.39 -0.02 1.06 16 42 H 0.07 2.26 6.30 -2.39 -0.02 2.25 16 43 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 44 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 45 H 0.02 0.91 7.20 -2.39 -0.02 0.90 16 46 H 0.02 0.86 7.57 -2.39 -0.02 0.85 16 47 H 0.27 15.86 8.31 -92.71 -0.77 15.08 16 48 H 0.13 1.97 7.10 -2.91 -0.02 1.95 16 49 H 0.14 1.70 7.95 -2.92 -0.02 1.67 16 Total: -1.00 -66.97 375.71 4.39 -62.57 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.17 Total: 21.74 kcal Atomic # 6 Polarization: -53.79 SS G_CDS: 4.46 Total: -49.33 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -2.12 Total: -81.80 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.82 kcal Total: -66.97 4.39 -62.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609358215.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.462 kcal (2) G-P(sol) polarization free energy of solvation -66.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds