Wall clock time and date at job start Tue Mar 31 2020 06:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09008 * 109.47230 * 2 1 4 4 C 1.53005 * 109.47266 * 119.99856 * 2 1 3 5 5 N 1.46911 * 109.46831 * 298.70984 * 4 2 1 6 6 C 1.46891 * 110.99765 * 182.08516 * 5 4 2 7 7 C 1.50703 * 109.47255 * 188.50572 * 6 5 4 8 8 H 1.07999 * 119.99548 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00278 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99965 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99896 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47097 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46853 * 120.00236 * 11 9 7 14 14 H 1.48499 * 109.47020 * 240.00086 * 11 9 7 15 15 C 1.46906 * 110.99794 * 306.03913 * 5 4 2 16 16 C 1.53002 * 109.46991 * 284.65828 * 15 5 4 17 17 C 1.53001 * 109.47131 * 38.09966 * 16 15 5 18 18 C 1.53000 * 109.46971 * 158.09776 * 16 15 5 19 19 C 1.52995 * 109.47051 * 278.10148 * 16 15 5 20 20 C 1.50701 * 109.47543 * 239.99834 * 2 1 3 21 21 C 1.38235 * 119.99671 * 299.72795 * 20 2 1 22 22 C 1.38233 * 119.99780 * 179.81148 * 21 20 2 23 23 C 1.38237 * 120.00062 * 0.39283 * 22 21 20 24 24 C 1.38230 * 119.99947 * 359.85959 * 23 22 21 25 25 C 1.38233 * 119.99965 * 120.00050 * 20 2 1 26 26 H 1.09006 * 109.47389 * 185.08513 * 1 2 3 27 27 H 1.09001 * 109.47182 * 305.08450 * 1 2 3 28 28 H 1.09000 * 109.47009 * 65.08784 * 1 2 3 29 29 H 1.09000 * 109.47298 * 178.71419 * 4 2 1 30 30 H 1.08994 * 109.47339 * 58.70677 * 4 2 1 31 31 H 1.09000 * 109.47646 * 308.50904 * 6 5 4 32 32 H 1.09004 * 109.47419 * 68.51115 * 6 5 4 33 33 H 0.97010 * 120.00160 * 179.97438 * 10 9 7 34 34 H 1.09001 * 109.47005 * 44.65586 * 15 5 4 35 35 H 1.08992 * 109.46685 * 164.66172 * 15 5 4 36 36 H 1.09001 * 109.47069 * 59.91321 * 17 16 15 37 37 H 1.09005 * 109.46936 * 179.90947 * 17 16 15 38 38 H 1.08998 * 109.47402 * 299.91070 * 17 16 15 39 39 H 1.09008 * 109.46743 * 60.00063 * 18 16 15 40 40 H 1.08998 * 109.47371 * 179.97438 * 18 16 15 41 41 H 1.08996 * 109.47283 * 300.00228 * 18 16 15 42 42 H 1.08995 * 109.47551 * 98.94974 * 19 16 15 43 43 H 1.08999 * 109.47015 * 218.94960 * 19 16 15 44 44 H 1.09003 * 109.47289 * 338.94572 * 19 16 15 45 45 H 1.07999 * 119.99990 * 359.97438 * 21 20 2 46 46 H 1.08006 * 120.00189 * 180.23411 * 22 21 20 47 47 H 1.08000 * 119.99988 * 179.84150 * 23 22 21 48 48 H 1.08000 * 120.00026 * 179.97438 * 24 23 22 49 49 H 1.08001 * 120.00259 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5759 -0.0108 2.4486 6 6 2.0884 -0.6477 3.6690 7 6 1.4300 -0.0271 4.8741 8 1 0.7030 0.7613 4.7461 9 6 1.7547 -0.4664 6.1399 10 7 2.6395 -1.4268 6.2958 11 14 0.9379 0.3025 7.6336 12 1 -0.0132 1.3536 7.1915 13 1 0.2028 -0.7436 8.3891 14 1 1.9745 0.9080 8.5077 15 6 1.9512 1.4086 2.3979 16 6 3.4448 1.5521 2.6972 17 6 4.2083 0.3953 2.0493 18 6 3.9531 2.8794 2.1308 19 6 3.6664 1.5251 4.2108 20 6 2.0323 -0.7104 -1.2304 21 6 1.7031 -2.0355 -1.4462 22 6 2.1607 -2.6861 -2.5768 23 6 2.9543 -2.0139 -3.4875 24 6 3.2879 -0.6904 -3.2690 25 6 2.8271 -0.0386 -2.1403 26 1 -0.3634 -1.0237 0.0911 27 1 -0.3633 0.5907 0.8409 28 1 -0.3633 0.4329 -0.9321 29 1 3.1297 -0.7413 1.2378 30 1 1.6579 -1.7419 1.2610 31 1 1.8666 -1.7146 3.6428 32 1 3.1671 -0.5023 3.7292 33 1 2.8683 -1.7357 7.1865 34 1 1.7399 1.8050 1.4047 35 1 1.3770 1.9628 3.1402 36 1 4.0491 0.4136 0.9711 37 1 5.2725 0.4985 2.2612 38 1 3.8472 -0.5502 2.4538 39 1 3.4091 3.7035 2.5925 40 1 5.0170 2.9819 2.3444 41 1 3.7952 2.8986 1.0526 42 1 3.9801 0.5263 4.5144 43 1 4.4397 2.2455 4.4776 44 1 2.7375 1.7843 4.7188 45 1 1.0861 -2.5617 -0.7329 46 1 1.9003 -3.7203 -2.7474 47 1 3.3140 -2.5229 -4.3695 48 1 3.9083 -0.1653 -3.9802 49 1 3.0877 0.9955 -1.9696 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609738963.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:14 Heat of formation + Delta-G solvation = 61.310286 kcal Electronic energy + Delta-G solvation = -24742.721071 eV Core-core repulsion = 21671.201392 eV Total energy + Delta-G solvation = -3071.519680 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.99042 -38.80590 -34.97075 -33.20472 -32.04687 -30.83163 -29.25745 -28.06081 -27.55498 -26.03075 -25.33081 -24.25504 -22.80113 -22.32131 -20.54252 -19.34164 -18.17607 -16.81553 -16.39615 -15.52605 -15.22068 -14.80179 -14.62461 -14.20519 -14.01580 -13.58976 -13.47244 -13.22069 -13.06386 -12.67654 -12.63942 -12.17102 -11.87998 -11.65138 -11.54846 -11.35202 -11.20210 -11.11923 -10.97372 -10.78172 -10.72417 -10.69384 -10.48678 -10.30763 -10.20397 -9.91320 -9.72059 -9.56811 -9.39229 -9.04449 -8.84423 -8.52962 -8.34178 -6.79342 -5.97322 -3.92885 1.46172 1.47747 3.32201 3.40890 3.44458 3.87949 4.46240 4.81853 4.91731 5.03671 5.15692 5.30396 5.33923 5.37578 5.46784 5.49835 5.59218 5.62195 5.65426 5.71106 5.81260 6.03052 6.07151 6.10664 6.14752 6.19149 6.23171 6.26449 6.29375 6.35207 6.43822 6.49548 6.54700 6.55947 6.60984 6.69675 6.72346 6.81261 6.86799 6.91484 6.99171 7.09639 7.16212 7.40095 7.49416 7.75031 7.88055 8.20309 8.33677 8.67121 9.10413 9.66242 11.13138 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021590 B = 0.004527 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.563261 B = 6183.402372 C = 6696.475202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.055 4.055 3 H 0.077 0.923 4 C 0.018 3.982 5 N -0.528 5.528 6 C 0.164 3.836 7 C -0.488 4.488 8 H 0.060 0.940 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.886 3.114 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.286 1.286 15 C 0.071 3.929 16 C -0.094 4.094 17 C -0.164 4.164 18 C -0.134 4.134 19 C -0.139 4.139 20 C -0.062 4.062 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.133 4.133 24 C -0.122 4.122 25 C -0.121 4.121 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.020 0.980 32 H 0.034 0.966 33 H 0.258 0.742 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.038 0.962 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.045 0.955 41 H 0.043 0.957 42 H 0.076 0.924 43 H 0.018 0.982 44 H 0.080 0.920 45 H 0.123 0.877 46 H 0.118 0.882 47 H 0.116 0.884 48 H 0.116 0.884 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.568 2.728 -16.027 16.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.074 4.074 3 H 0.096 0.904 4 C -0.110 4.110 5 N -0.251 5.251 6 C 0.040 3.960 7 C -0.526 4.526 8 H 0.078 0.922 9 C -0.144 4.144 10 N -0.538 5.538 11 Si 0.714 3.286 12 H -0.198 1.198 13 H -0.213 1.213 14 H -0.213 1.213 15 C -0.057 4.057 16 C -0.095 4.095 17 C -0.220 4.220 18 C -0.192 4.192 19 C -0.196 4.196 20 C -0.062 4.062 21 C -0.131 4.131 22 C -0.138 4.138 23 C -0.152 4.152 24 C -0.140 4.140 25 C -0.139 4.139 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.037 0.963 44 H 0.099 0.901 45 H 0.141 0.859 46 H 0.136 0.864 47 H 0.134 0.866 48 H 0.135 0.865 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.113 2.578 -15.859 16.106 hybrid contribution 0.525 0.324 0.869 1.066 sum 1.638 2.902 -14.991 15.357 Atomic orbital electron populations 1.21673 0.93934 1.02125 1.00890 1.20339 0.96629 0.98942 0.91457 0.90447 1.23125 1.00927 0.97356 0.89564 1.62362 1.59170 1.01249 1.02304 1.20393 0.95932 0.94314 0.85383 1.21076 1.22600 1.19026 0.89940 0.92200 1.24871 0.95481 0.95384 0.98677 1.69947 1.33147 1.28395 1.22348 0.86627 0.79369 0.79242 0.83336 1.19787 1.21251 1.21260 1.22303 0.92156 0.91452 0.99835 1.21152 0.97254 0.93873 0.97259 1.22842 0.99241 1.00583 0.99328 1.21882 1.00166 0.97592 0.99527 1.22343 1.01943 1.02060 0.93254 1.20050 0.96105 0.94145 0.95918 1.21091 1.00117 0.94489 0.97370 1.21134 0.98251 0.99711 0.94739 1.21061 0.99540 0.94974 0.99576 1.21082 1.00250 0.94997 0.97646 1.21083 0.98381 0.99859 0.94586 0.92969 0.90990 0.94258 0.90996 0.92224 0.96203 0.94930 0.93200 0.92780 0.90938 0.93090 0.94255 0.89155 0.93087 0.93583 0.93823 0.90486 0.96279 0.90098 0.85942 0.86421 0.86637 0.86549 0.86428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.72 37.15 0.32 -1.52 16 2 C -0.06 -0.80 1.91 -91.77 -0.18 -0.97 16 3 H 0.08 1.12 5.67 -51.92 -0.29 0.82 16 4 C 0.02 0.31 3.50 -3.82 -0.01 0.29 16 5 N -0.53 -10.51 4.19 -236.06 -0.99 -11.50 16 6 C 0.16 3.94 3.70 -4.98 -0.02 3.92 16 7 C -0.49 -12.72 5.61 -34.44 -0.19 -12.92 16 8 H 0.06 1.59 7.03 -52.49 -0.37 1.22 16 9 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 10 N -0.90 -25.48 13.29 55.43 0.74 -24.75 16 11 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 C 0.07 1.29 4.58 -3.82 -0.02 1.28 16 16 C -0.09 -1.64 0.77 -154.51 -0.12 -1.76 16 17 C -0.16 -2.83 6.12 37.16 0.23 -2.60 16 18 C -0.13 -1.97 8.13 37.16 0.30 -1.67 16 19 C -0.14 -2.84 7.44 37.16 0.28 -2.56 16 20 C -0.06 -0.83 4.78 -104.62 -0.50 -1.33 16 21 C -0.11 -1.47 8.78 -39.58 -0.35 -1.82 16 22 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 23 C -0.13 -1.46 10.05 -39.58 -0.40 -1.85 16 24 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 25 C -0.12 -1.50 9.67 -39.58 -0.38 -1.88 16 26 H 0.05 0.75 7.59 -51.93 -0.39 0.36 16 27 H 0.07 1.13 7.80 -51.93 -0.40 0.72 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 1.26 3.07 -56.75 -0.17 1.08 16 30 H 0.06 1.07 7.42 -51.93 -0.39 0.69 16 31 H 0.02 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.03 0.81 2.41 -51.93 -0.13 0.69 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.05 0.88 5.19 -51.93 -0.27 0.61 16 35 H 0.07 1.45 6.53 -51.93 -0.34 1.11 16 36 H 0.05 0.81 6.47 -51.93 -0.34 0.47 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.78 3.40 -51.93 -0.18 1.60 16 39 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 40 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 41 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 42 H 0.08 1.81 5.65 -51.93 -0.29 1.51 16 43 H 0.02 0.35 7.71 -51.93 -0.40 -0.05 16 44 H 0.08 1.80 5.39 -51.93 -0.28 1.52 16 45 H 0.12 1.57 7.18 -52.49 -0.38 1.20 16 46 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 47 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 48 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 49 H 0.12 1.31 7.95 -52.49 -0.42 0.89 16 LS Contribution 355.34 15.07 5.35 5.35 Total: -1.00 -27.27 355.34 -9.82 -37.09 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.97 Total: 5.20 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: -1.93 Total: -27.52 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.25 Total: -36.25 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.27 -9.82 -37.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609738963.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.397 kcal (2) G-P(sol) polarization free energy of solvation -27.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds