Wall clock time and date at job start Tue Mar 31 2020 06:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09008 * 109.47230 * 2 1 4 4 C 1.53005 * 109.47266 * 119.99856 * 2 1 3 5 5 N 1.46911 * 109.46831 * 298.70984 * 4 2 1 6 6 C 1.46891 * 110.99765 * 182.08516 * 5 4 2 7 7 C 1.50703 * 109.47255 * 188.50572 * 6 5 4 8 8 H 1.07999 * 119.99548 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00278 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99965 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99896 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47097 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46853 * 120.00236 * 11 9 7 14 14 H 1.48499 * 109.47020 * 240.00086 * 11 9 7 15 15 C 1.46906 * 110.99794 * 306.03913 * 5 4 2 16 16 C 1.53002 * 109.46991 * 284.65828 * 15 5 4 17 17 C 1.53001 * 109.47131 * 38.09966 * 16 15 5 18 18 C 1.53000 * 109.46971 * 158.09776 * 16 15 5 19 19 C 1.52995 * 109.47051 * 278.10148 * 16 15 5 20 20 C 1.50701 * 109.47543 * 239.99834 * 2 1 3 21 21 C 1.38235 * 119.99671 * 299.72795 * 20 2 1 22 22 C 1.38233 * 119.99780 * 179.81148 * 21 20 2 23 23 C 1.38237 * 120.00062 * 0.39283 * 22 21 20 24 24 C 1.38230 * 119.99947 * 359.85959 * 23 22 21 25 25 C 1.38233 * 119.99965 * 120.00050 * 20 2 1 26 26 H 1.09006 * 109.47389 * 185.08513 * 1 2 3 27 27 H 1.09001 * 109.47182 * 305.08450 * 1 2 3 28 28 H 1.09000 * 109.47009 * 65.08784 * 1 2 3 29 29 H 1.09000 * 109.47298 * 178.71419 * 4 2 1 30 30 H 1.08994 * 109.47339 * 58.70677 * 4 2 1 31 31 H 1.09000 * 109.47646 * 308.50904 * 6 5 4 32 32 H 1.09004 * 109.47419 * 68.51115 * 6 5 4 33 33 H 0.97010 * 120.00160 * 179.97438 * 10 9 7 34 34 H 1.09001 * 109.47005 * 44.65586 * 15 5 4 35 35 H 1.08992 * 109.46685 * 164.66172 * 15 5 4 36 36 H 1.09001 * 109.47069 * 59.91321 * 17 16 15 37 37 H 1.09005 * 109.46936 * 179.90947 * 17 16 15 38 38 H 1.08998 * 109.47402 * 299.91070 * 17 16 15 39 39 H 1.09008 * 109.46743 * 60.00063 * 18 16 15 40 40 H 1.08998 * 109.47371 * 179.97438 * 18 16 15 41 41 H 1.08996 * 109.47283 * 300.00228 * 18 16 15 42 42 H 1.08995 * 109.47551 * 98.94974 * 19 16 15 43 43 H 1.08999 * 109.47015 * 218.94960 * 19 16 15 44 44 H 1.09003 * 109.47289 * 338.94572 * 19 16 15 45 45 H 1.07999 * 119.99990 * 359.97438 * 21 20 2 46 46 H 1.08006 * 120.00189 * 180.23411 * 22 21 20 47 47 H 1.08000 * 119.99988 * 179.84150 * 23 22 21 48 48 H 1.08000 * 120.00026 * 179.97438 * 24 23 22 49 49 H 1.08001 * 120.00259 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5759 -0.0108 2.4486 6 6 2.0884 -0.6477 3.6690 7 6 1.4300 -0.0271 4.8741 8 1 0.7030 0.7613 4.7461 9 6 1.7547 -0.4664 6.1399 10 7 2.6395 -1.4268 6.2958 11 14 0.9379 0.3025 7.6336 12 1 -0.0132 1.3536 7.1915 13 1 0.2028 -0.7436 8.3891 14 1 1.9745 0.9080 8.5077 15 6 1.9512 1.4086 2.3979 16 6 3.4448 1.5521 2.6972 17 6 4.2083 0.3953 2.0493 18 6 3.9531 2.8794 2.1308 19 6 3.6664 1.5251 4.2108 20 6 2.0323 -0.7104 -1.2304 21 6 1.7031 -2.0355 -1.4462 22 6 2.1607 -2.6861 -2.5768 23 6 2.9543 -2.0139 -3.4875 24 6 3.2879 -0.6904 -3.2690 25 6 2.8271 -0.0386 -2.1403 26 1 -0.3634 -1.0237 0.0911 27 1 -0.3633 0.5907 0.8409 28 1 -0.3633 0.4329 -0.9321 29 1 3.1297 -0.7413 1.2378 30 1 1.6579 -1.7419 1.2610 31 1 1.8666 -1.7146 3.6428 32 1 3.1671 -0.5023 3.7292 33 1 2.8683 -1.7357 7.1865 34 1 1.7399 1.8050 1.4047 35 1 1.3770 1.9628 3.1402 36 1 4.0491 0.4136 0.9711 37 1 5.2725 0.4985 2.2612 38 1 3.8472 -0.5502 2.4538 39 1 3.4091 3.7035 2.5925 40 1 5.0170 2.9819 2.3444 41 1 3.7952 2.8986 1.0526 42 1 3.9801 0.5263 4.5144 43 1 4.4397 2.2455 4.4776 44 1 2.7375 1.7843 4.7188 45 1 1.0861 -2.5617 -0.7329 46 1 1.9003 -3.7203 -2.7474 47 1 3.3140 -2.5229 -4.3695 48 1 3.9083 -0.1653 -3.9802 49 1 3.0877 0.9955 -1.9696 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609738963.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:14 Heat of formation + Delta-G solvation = 48.521648 kcal Electronic energy + Delta-G solvation = -24743.275628 eV Core-core repulsion = 21671.201392 eV Total energy + Delta-G solvation = -3072.074236 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.35364 -39.90602 -36.19669 -35.05029 -33.66994 -31.71665 -30.45865 -29.54127 -29.16243 -27.49198 -26.83388 -25.82908 -24.05380 -23.31524 -22.04036 -20.59758 -19.62611 -18.38906 -17.80222 -16.84769 -16.59568 -16.43550 -15.99643 -15.51526 -15.31862 -15.05629 -14.68130 -14.34845 -14.20162 -14.13036 -13.91970 -13.57592 -13.15391 -13.02818 -12.90311 -12.87797 -12.72313 -12.60872 -12.49207 -12.33298 -12.26648 -12.09733 -11.93701 -11.70121 -11.66966 -11.43542 -11.26157 -11.14603 -10.98433 -10.82371 -10.44151 -9.73756 -9.50127 -8.43640 -8.06423 -6.08215 0.54542 0.58190 1.39583 1.42844 1.52902 2.45913 2.96384 3.25994 3.49829 3.87299 4.00439 4.06824 4.11284 4.22645 4.24739 4.28446 4.36840 4.42743 4.58705 4.68864 4.70940 4.75249 4.78121 4.79276 4.89223 4.94738 4.98784 5.05451 5.13474 5.17601 5.18848 5.20727 5.24297 5.25739 5.30094 5.35640 5.44666 5.48537 5.52423 5.59450 5.68647 5.70277 5.70863 5.82887 5.87805 5.96522 6.21307 6.25783 6.58804 6.87706 7.03697 7.54772 9.02968 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021590 B = 0.004527 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.563261 B = 6183.402372 C = 6696.475202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.042 4.042 3 H 0.085 0.915 4 C 0.023 3.977 5 N -0.536 5.536 6 C 0.179 3.821 7 C -0.486 4.486 8 H 0.053 0.947 9 C 0.011 3.989 10 N -0.931 5.931 11 Si 0.943 3.057 12 H -0.267 1.267 13 H -0.287 1.287 14 H -0.282 1.282 15 C 0.074 3.926 16 C -0.091 4.091 17 C -0.155 4.155 18 C -0.127 4.127 19 C -0.130 4.130 20 C -0.078 4.078 21 C -0.131 4.131 22 C -0.128 4.128 23 C -0.133 4.133 24 C -0.123 4.123 25 C -0.128 4.128 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.041 0.959 31 H -0.022 1.022 32 H 0.032 0.968 33 H 0.258 0.742 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.034 0.966 44 H 0.056 0.944 45 H 0.112 0.888 46 H 0.134 0.866 47 H 0.142 0.858 48 H 0.143 0.857 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.175 4.399 -18.438 19.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.060 4.060 3 H 0.103 0.897 4 C -0.104 4.104 5 N -0.259 5.259 6 C 0.053 3.947 7 C -0.525 4.525 8 H 0.071 0.929 9 C -0.186 4.186 10 N -0.573 5.573 11 Si 0.770 3.230 12 H -0.191 1.191 13 H -0.213 1.213 14 H -0.208 1.208 15 C -0.054 4.054 16 C -0.093 4.093 17 C -0.211 4.211 18 C -0.185 4.185 19 C -0.187 4.187 20 C -0.078 4.078 21 C -0.149 4.149 22 C -0.146 4.146 23 C -0.151 4.151 24 C -0.141 4.141 25 C -0.146 4.146 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.059 0.941 31 H -0.004 1.004 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.130 0.870 46 H 0.152 0.848 47 H 0.160 0.840 48 H 0.161 0.839 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.709 4.263 -18.284 18.852 hybrid contribution 0.343 -0.247 1.541 1.598 sum 2.052 4.016 -16.743 17.340 Atomic orbital electron populations 1.21612 0.94037 1.01453 1.01058 1.20172 0.96486 0.98862 0.90530 0.89694 1.23091 1.00937 0.96651 0.89697 1.62195 1.59522 1.02351 1.01826 1.20085 0.95796 0.91933 0.86869 1.21260 1.21946 1.18365 0.90888 0.92899 1.25536 0.96045 0.95839 1.01229 1.70063 1.34638 1.29843 1.22758 0.85725 0.78566 0.78496 0.80243 1.19074 1.21304 1.20848 1.22295 0.92486 0.89853 1.00735 1.21105 0.96862 0.96014 0.95316 1.22695 0.99354 0.98824 1.00247 1.21809 1.00557 0.95388 1.00768 1.22175 1.00964 1.00078 0.95456 1.19953 0.97514 0.94394 0.95972 1.21156 1.00828 0.94779 0.98111 1.21389 0.98198 1.00644 0.94337 1.21433 0.98552 0.95127 1.00004 1.21432 0.99921 0.95188 0.97568 1.21292 0.97987 1.00613 0.94698 0.93809 0.92585 0.92484 0.90907 0.94065 1.00388 0.95070 0.93320 0.89997 0.92939 0.91099 0.93632 0.92207 0.92510 0.92779 0.91587 0.94145 0.94690 0.92460 0.86996 0.84815 0.84045 0.83944 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.48 8.72 71.98 0.63 -2.86 16 2 C -0.04 -1.17 1.91 -11.54 -0.02 -1.19 16 3 H 0.09 2.22 5.67 -2.38 -0.01 2.21 16 4 C 0.02 0.82 3.50 86.30 0.30 1.12 16 5 N -0.54 -21.90 4.19 -900.76 -3.78 -25.68 16 6 C 0.18 9.01 3.70 85.56 0.32 9.32 16 7 C -0.49 -26.27 5.61 25.60 0.14 -26.13 16 8 H 0.05 2.89 7.03 -2.91 -0.02 2.87 16 9 C 0.01 0.60 5.46 84.65 0.46 1.06 16 10 N -0.93 -54.80 13.29 21.44 0.28 -54.51 16 11 Si 0.94 44.25 29.54 68.60 2.03 46.27 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 13 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 14 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 15 C 0.07 2.67 4.58 86.30 0.40 3.06 16 16 C -0.09 -3.10 0.77 -52.18 -0.04 -3.14 16 17 C -0.16 -5.22 6.12 71.98 0.44 -4.78 16 18 C -0.13 -3.36 8.13 71.98 0.59 -2.77 16 19 C -0.13 -5.34 7.44 71.98 0.54 -4.81 16 20 C -0.08 -1.98 4.78 -19.87 -0.09 -2.07 16 21 C -0.13 -3.33 8.78 22.27 0.20 -3.14 16 22 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 23 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 24 C -0.12 -2.32 10.05 22.27 0.22 -2.09 16 25 C -0.13 -2.79 9.67 22.27 0.22 -2.57 16 26 H 0.04 1.28 7.59 -2.38 -0.02 1.26 16 27 H 0.06 1.73 7.80 -2.39 -0.02 1.71 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 2.56 3.07 -6.91 -0.02 2.54 16 30 H 0.04 1.57 7.42 -2.39 -0.02 1.55 16 31 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 32 H 0.03 1.64 2.41 -2.39 -0.01 1.63 16 33 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 34 H 0.08 2.48 5.19 -2.39 -0.01 2.47 16 35 H 0.05 2.09 6.53 -2.39 -0.02 2.08 16 36 H 0.07 2.09 6.47 -2.39 -0.02 2.08 16 37 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.06 2.41 3.40 -2.39 -0.01 2.40 16 39 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.05 1.35 8.13 -2.39 -0.02 1.33 16 41 H 0.07 1.47 8.12 -2.39 -0.02 1.45 16 42 H 0.04 1.95 5.65 -2.39 -0.01 1.94 16 43 H 0.03 1.27 7.71 -2.39 -0.02 1.26 16 44 H 0.06 2.60 5.39 -2.39 -0.01 2.59 16 45 H 0.11 2.98 7.18 -2.91 -0.02 2.96 16 46 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 47 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 48 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 49 H 0.13 2.43 7.95 -2.91 -0.02 2.41 16 Total: -1.00 -60.85 355.34 4.17 -56.68 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.91 Total: 23.02 kcal Atomic # 6 Polarization: -50.51 SS G_CDS: 4.73 Total: -45.78 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -3.49 Total: -80.19 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -60.85 4.17 -56.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609738963.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.198 kcal (2) G-P(sol) polarization free energy of solvation -60.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds