Wall clock time and date at job start Tue Mar 31 2020 06:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47228 * 2 1 4 4 C 1.52992 * 109.47438 * 239.99498 * 2 1 3 5 5 N 1.46903 * 109.47183 * 65.98596 * 4 2 1 6 6 C 1.46903 * 110.99223 * 76.07920 * 5 4 2 7 7 C 1.50699 * 109.46810 * 194.10675 * 6 5 4 8 8 H 1.08004 * 120.00452 * 4.44096 * 7 6 5 9 9 C 1.37878 * 120.00008 * 184.44746 * 7 6 5 10 10 N 1.31517 * 120.00248 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00119 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47328 * 59.99732 * 11 9 7 13 13 H 1.48495 * 109.47320 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.47296 * 300.00122 * 11 9 7 15 15 C 1.46900 * 111.00199 * 200.02543 * 5 4 2 16 16 C 1.53004 * 109.46377 * 87.93436 * 15 5 4 17 17 C 1.53002 * 109.47291 * 56.71169 * 16 15 5 18 18 C 1.53000 * 109.46728 * 176.70530 * 16 15 5 19 19 C 1.52990 * 109.47466 * 296.70610 * 16 15 5 20 20 C 1.50705 * 109.46561 * 119.99637 * 2 1 3 21 21 C 1.38227 * 120.00006 * 59.72768 * 20 2 1 22 22 C 1.38247 * 119.99880 * 179.78599 * 21 20 2 23 23 C 1.38234 * 119.99441 * 0.44227 * 22 21 20 24 24 C 1.38236 * 120.00434 * 359.81206 * 23 22 21 25 25 C 1.38226 * 119.99747 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47439 * 297.87941 * 1 2 3 27 27 H 1.09004 * 109.46765 * 57.87189 * 1 2 3 28 28 H 1.08999 * 109.47348 * 177.86890 * 1 2 3 29 29 H 1.08992 * 109.47675 * 185.99299 * 4 2 1 30 30 H 1.09010 * 109.47221 * 305.99334 * 4 2 1 31 31 H 1.09004 * 109.47532 * 314.09949 * 6 5 4 32 32 H 1.09003 * 109.47292 * 74.10734 * 6 5 4 33 33 H 0.96990 * 120.00081 * 179.97438 * 10 9 7 34 34 H 1.09001 * 109.47183 * 207.93116 * 15 5 4 35 35 H 1.08992 * 109.47398 * 327.93881 * 15 5 4 36 36 H 1.09002 * 109.47613 * 64.34784 * 17 16 15 37 37 H 1.08996 * 109.47012 * 184.35627 * 17 16 15 38 38 H 1.08999 * 109.46712 * 304.35259 * 17 16 15 39 39 H 1.09004 * 109.46908 * 59.99929 * 18 16 15 40 40 H 1.09001 * 109.47420 * 180.02562 * 18 16 15 41 41 H 1.09003 * 109.47417 * 300.00371 * 18 16 15 42 42 H 1.08998 * 109.47351 * 71.28260 * 19 16 15 43 43 H 1.08995 * 109.47411 * 191.27901 * 19 16 15 44 44 H 1.09006 * 109.47452 * 311.27919 * 19 16 15 45 45 H 1.07999 * 120.00502 * 359.97438 * 21 20 2 46 46 H 1.08000 * 120.00135 * 180.27526 * 22 21 20 47 47 H 1.07997 * 119.99333 * 179.83755 * 23 22 21 48 48 H 1.07998 * 119.99621 * 179.97438 * 24 23 22 49 49 H 1.08005 * 119.99844 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6720 0.0494 -2.4443 6 6 2.5406 1.2236 -2.6015 7 6 1.9347 2.1652 -3.6101 8 1 0.9642 1.9518 -4.0333 9 6 2.6193 3.2992 -3.9928 10 7 3.8009 3.5594 -3.4773 11 14 1.8686 4.4660 -5.2436 12 1 0.5775 4.9845 -4.7243 13 1 2.7969 5.6002 -5.4821 14 1 1.6340 3.7411 -6.5183 15 6 1.7054 -0.7947 -3.6461 16 6 0.3466 -1.4736 -3.8302 17 6 -0.7497 -0.4088 -3.9039 18 6 0.3547 -2.2876 -5.1257 19 6 0.0760 -2.4030 -2.6455 20 6 2.0323 -0.7104 1.2306 21 6 1.6936 -2.0321 1.4522 22 6 2.1579 -2.6850 2.5789 23 6 2.9534 -2.0133 3.4883 24 6 3.2877 -0.6900 3.2692 25 6 2.8270 -0.0385 2.1405 26 1 -0.3634 0.4805 0.9084 27 1 -0.3633 0.5466 -0.8703 28 1 -0.3634 -1.0269 -0.0382 29 1 3.1247 -0.8152 -1.1971 30 1 1.5918 -1.7134 -1.3043 31 1 2.6401 1.7331 -1.6429 32 1 3.5239 0.9046 -2.9472 33 1 4.2826 4.3569 -3.7468 34 1 1.9244 -0.1777 -4.5175 35 1 2.4789 -1.5544 -3.5351 36 1 -0.6005 0.2056 -4.7917 37 1 -1.7243 -0.8939 -3.9572 38 1 -0.7053 0.2204 -3.0150 39 1 1.1357 -3.0461 -5.0732 40 1 -0.6135 -2.7709 -5.2572 41 1 0.5474 -1.6254 -5.9697 42 1 -0.1284 -1.8075 -1.7558 43 1 -0.7856 -3.0327 -2.8670 44 1 0.9494 -3.0312 -2.4696 45 1 1.0688 -2.5556 0.7438 46 1 1.8970 -3.7190 2.7498 47 1 3.3139 -2.5227 4.3697 48 1 3.9088 -0.1653 3.9800 49 1 3.0886 0.9953 1.9692 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609738964.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:18 Heat of formation + Delta-G solvation = 5.748597 kcal Electronic energy + Delta-G solvation = -24291.107165 eV Core-core repulsion = 21217.178149 eV Total energy + Delta-G solvation = -3073.929015 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.45785 -38.11921 -35.30466 -33.61658 -32.10139 -30.76385 -29.21237 -27.54640 -26.78393 -26.58164 -25.95209 -23.90407 -22.93187 -22.23295 -20.81581 -19.12643 -18.30093 -16.66207 -16.35535 -15.25376 -14.98639 -14.86800 -14.39956 -14.34372 -14.02113 -13.53799 -13.37750 -13.36572 -13.04299 -12.80045 -12.58141 -12.18302 -11.97002 -11.87596 -11.68602 -11.60254 -11.30916 -11.26414 -11.05985 -10.93460 -10.85448 -10.62557 -10.60641 -10.47089 -10.21821 -10.13238 -9.89982 -9.85576 -9.34800 -9.13907 -8.77456 -8.48446 -8.38191 -7.12762 -5.98345 -3.98843 1.53297 1.54729 3.34790 3.39284 3.41914 3.94921 4.45097 4.80783 5.00411 5.07651 5.17643 5.28525 5.34599 5.37149 5.38260 5.47672 5.56242 5.66806 5.71132 5.79198 5.89172 5.91775 6.01161 6.07542 6.10691 6.15002 6.21704 6.23274 6.24295 6.33954 6.39780 6.45494 6.50126 6.53267 6.59123 6.62712 6.66096 6.68985 6.77420 6.83430 6.94721 7.01259 7.17037 7.18947 7.34779 7.44350 7.89212 8.18540 8.28507 8.62368 9.10585 9.65287 11.12214 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013353 B = 0.005288 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.351336 B = 5293.383217 C = 6835.231127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.050 4.050 3 H 0.084 0.916 4 C 0.054 3.946 5 N -0.527 5.527 6 C 0.192 3.808 7 C -0.501 4.501 8 H 0.065 0.935 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.893 3.107 12 H -0.277 1.277 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.073 3.927 16 C -0.061 4.061 17 C -0.127 4.127 18 C -0.140 4.140 19 C -0.144 4.144 20 C -0.062 4.062 21 C -0.116 4.116 22 C -0.123 4.123 23 C -0.135 4.135 24 C -0.120 4.120 25 C -0.117 4.117 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.020 0.980 30 H 0.074 0.926 31 H 0.027 0.973 32 H -0.010 1.010 33 H 0.260 0.740 34 H 0.081 0.919 35 H 0.018 0.982 36 H 0.048 0.952 37 H 0.032 0.968 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.043 0.957 45 H 0.119 0.881 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.117 0.883 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.055 -12.148 8.220 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.069 4.069 3 H 0.102 0.898 4 C -0.075 4.075 5 N -0.250 5.250 6 C 0.067 3.933 7 C -0.540 4.540 8 H 0.083 0.917 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.721 3.279 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.204 1.204 15 C -0.056 4.056 16 C -0.062 4.062 17 C -0.184 4.184 18 C -0.198 4.198 19 C -0.201 4.201 20 C -0.062 4.062 21 C -0.134 4.134 22 C -0.141 4.141 23 C -0.153 4.153 24 C -0.139 4.139 25 C -0.135 4.135 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.008 0.992 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.036 0.964 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.137 0.863 46 H 0.134 0.866 47 H 0.133 0.867 48 H 0.135 0.865 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.380 -11.831 8.267 15.403 hybrid contribution 0.737 0.425 -0.741 1.128 sum -4.643 -11.406 7.526 14.433 Atomic orbital electron populations 1.21737 0.94072 1.01034 1.01824 1.20187 0.96427 0.99737 0.90512 0.89808 1.22364 0.97196 0.97082 0.90838 1.61960 1.54985 1.07689 1.00386 1.19768 0.89915 0.86540 0.97048 1.21168 1.03964 1.05669 1.23178 0.91668 1.24975 0.94887 0.98012 0.96719 1.69950 1.13114 1.27023 1.43931 0.86643 0.78963 0.80447 0.81829 1.20243 1.21537 1.20369 1.22023 0.93588 0.94942 0.95038 1.20500 0.96867 0.94967 0.93827 1.21716 0.95301 0.98042 1.03336 1.21867 1.00599 0.99544 0.97768 1.22129 0.99762 0.98725 0.99515 1.20116 0.95973 0.94060 0.96060 1.21017 1.00365 0.94541 0.97506 1.21091 0.98514 0.99556 0.94932 1.21048 0.99675 0.95003 0.99544 1.21109 1.00125 0.94946 0.97671 1.21187 0.97830 1.00218 0.94284 0.94008 0.90419 0.93487 0.96156 0.90826 0.95519 0.99179 0.93031 0.90092 0.96354 0.93303 0.94940 0.90460 0.93485 0.93322 0.92763 0.90965 0.94053 0.93776 0.86284 0.86580 0.86695 0.86470 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.12 37.16 0.30 -1.63 16 2 C -0.05 -0.81 2.62 -91.77 -0.24 -1.05 16 3 H 0.08 1.57 6.38 -51.93 -0.33 1.24 16 4 C 0.05 0.93 3.31 -3.83 -0.01 0.92 16 5 N -0.53 -10.44 2.73 -236.07 -0.65 -11.09 16 6 C 0.19 4.80 4.49 -4.97 -0.02 4.77 16 7 C -0.50 -13.50 8.22 -34.44 -0.28 -13.78 16 8 H 0.07 1.73 7.81 -52.48 -0.41 1.32 16 9 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 11 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.07 1.36 3.99 -3.82 -0.02 1.34 16 16 C -0.06 -0.94 0.85 -154.51 -0.13 -1.07 16 17 C -0.13 -2.06 8.33 37.16 0.31 -1.75 16 18 C -0.14 -1.92 8.45 37.16 0.31 -1.61 16 19 C -0.14 -1.98 6.90 37.15 0.26 -1.72 16 20 C -0.06 -0.91 4.78 -104.62 -0.50 -1.41 16 21 C -0.12 -1.53 8.79 -39.58 -0.35 -1.88 16 22 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 23 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 24 C -0.12 -1.50 10.05 -39.59 -0.40 -1.90 16 25 C -0.12 -1.67 9.67 -39.59 -0.38 -2.06 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.29 7.07 -51.93 -0.37 0.92 16 28 H 0.05 0.63 6.03 -51.93 -0.31 0.31 16 29 H 0.02 0.39 7.99 -51.93 -0.42 -0.03 16 30 H 0.07 1.15 3.85 -51.92 -0.20 0.95 16 31 H 0.03 0.71 6.52 -51.93 -0.34 0.37 16 32 H -0.01 -0.27 8.08 -51.93 -0.42 -0.69 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.08 1.73 6.96 -51.93 -0.36 1.37 16 35 H 0.02 0.33 7.80 -51.93 -0.41 -0.07 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 1.38 6.60 -51.93 -0.34 1.04 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.07 1.01 4.29 -51.93 -0.22 0.79 16 43 H 0.04 0.51 8.10 -51.93 -0.42 0.09 16 44 H 0.04 0.59 7.34 -51.93 -0.38 0.21 16 45 H 0.12 1.44 7.20 -52.49 -0.38 1.06 16 46 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 47 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 48 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 49 H 0.12 1.71 7.95 -52.48 -0.42 1.29 16 LS Contribution 372.30 15.07 5.61 5.61 Total: -1.00 -28.27 372.30 -10.03 -38.30 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -8.66 Total: 1.66 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -2.04 Total: -25.19 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.09 Total: -36.82 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.27 -10.03 -38.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609738964.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.046 kcal (2) G-P(sol) polarization free energy of solvation -28.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds