Wall clock time and date at job start Tue Mar 31 2020 06:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47228 * 2 1 4 4 C 1.52992 * 109.47438 * 239.99498 * 2 1 3 5 5 N 1.46903 * 109.47183 * 65.98596 * 4 2 1 6 6 C 1.46903 * 110.99223 * 76.07920 * 5 4 2 7 7 C 1.50699 * 109.46810 * 194.10675 * 6 5 4 8 8 H 1.08004 * 120.00452 * 4.44096 * 7 6 5 9 9 C 1.37878 * 120.00008 * 184.44746 * 7 6 5 10 10 N 1.31517 * 120.00248 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00119 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47328 * 59.99732 * 11 9 7 13 13 H 1.48495 * 109.47320 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.47296 * 300.00122 * 11 9 7 15 15 C 1.46900 * 111.00199 * 200.02543 * 5 4 2 16 16 C 1.53004 * 109.46377 * 87.93436 * 15 5 4 17 17 C 1.53002 * 109.47291 * 56.71169 * 16 15 5 18 18 C 1.53000 * 109.46728 * 176.70530 * 16 15 5 19 19 C 1.52990 * 109.47466 * 296.70610 * 16 15 5 20 20 C 1.50705 * 109.46561 * 119.99637 * 2 1 3 21 21 C 1.38227 * 120.00006 * 59.72768 * 20 2 1 22 22 C 1.38247 * 119.99880 * 179.78599 * 21 20 2 23 23 C 1.38234 * 119.99441 * 0.44227 * 22 21 20 24 24 C 1.38236 * 120.00434 * 359.81206 * 23 22 21 25 25 C 1.38226 * 119.99747 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47439 * 297.87941 * 1 2 3 27 27 H 1.09004 * 109.46765 * 57.87189 * 1 2 3 28 28 H 1.08999 * 109.47348 * 177.86890 * 1 2 3 29 29 H 1.08992 * 109.47675 * 185.99299 * 4 2 1 30 30 H 1.09010 * 109.47221 * 305.99334 * 4 2 1 31 31 H 1.09004 * 109.47532 * 314.09949 * 6 5 4 32 32 H 1.09003 * 109.47292 * 74.10734 * 6 5 4 33 33 H 0.96990 * 120.00081 * 179.97438 * 10 9 7 34 34 H 1.09001 * 109.47183 * 207.93116 * 15 5 4 35 35 H 1.08992 * 109.47398 * 327.93881 * 15 5 4 36 36 H 1.09002 * 109.47613 * 64.34784 * 17 16 15 37 37 H 1.08996 * 109.47012 * 184.35627 * 17 16 15 38 38 H 1.08999 * 109.46712 * 304.35259 * 17 16 15 39 39 H 1.09004 * 109.46908 * 59.99929 * 18 16 15 40 40 H 1.09001 * 109.47420 * 180.02562 * 18 16 15 41 41 H 1.09003 * 109.47417 * 300.00371 * 18 16 15 42 42 H 1.08998 * 109.47351 * 71.28260 * 19 16 15 43 43 H 1.08995 * 109.47411 * 191.27901 * 19 16 15 44 44 H 1.09006 * 109.47452 * 311.27919 * 19 16 15 45 45 H 1.07999 * 120.00502 * 359.97438 * 21 20 2 46 46 H 1.08000 * 120.00135 * 180.27526 * 22 21 20 47 47 H 1.07997 * 119.99333 * 179.83755 * 23 22 21 48 48 H 1.07998 * 119.99621 * 179.97438 * 24 23 22 49 49 H 1.08005 * 119.99844 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6720 0.0494 -2.4443 6 6 2.5406 1.2236 -2.6015 7 6 1.9347 2.1652 -3.6101 8 1 0.9642 1.9518 -4.0333 9 6 2.6193 3.2992 -3.9928 10 7 3.8009 3.5594 -3.4773 11 14 1.8686 4.4660 -5.2436 12 1 0.5775 4.9845 -4.7243 13 1 2.7969 5.6002 -5.4821 14 1 1.6340 3.7411 -6.5183 15 6 1.7054 -0.7947 -3.6461 16 6 0.3466 -1.4736 -3.8302 17 6 -0.7497 -0.4088 -3.9039 18 6 0.3547 -2.2876 -5.1257 19 6 0.0760 -2.4030 -2.6455 20 6 2.0323 -0.7104 1.2306 21 6 1.6936 -2.0321 1.4522 22 6 2.1579 -2.6850 2.5789 23 6 2.9534 -2.0133 3.4883 24 6 3.2877 -0.6900 3.2692 25 6 2.8270 -0.0385 2.1405 26 1 -0.3634 0.4805 0.9084 27 1 -0.3633 0.5466 -0.8703 28 1 -0.3634 -1.0269 -0.0382 29 1 3.1247 -0.8152 -1.1971 30 1 1.5918 -1.7134 -1.3043 31 1 2.6401 1.7331 -1.6429 32 1 3.5239 0.9046 -2.9472 33 1 4.2826 4.3569 -3.7468 34 1 1.9244 -0.1777 -4.5175 35 1 2.4789 -1.5544 -3.5351 36 1 -0.6005 0.2056 -4.7917 37 1 -1.7243 -0.8939 -3.9572 38 1 -0.7053 0.2204 -3.0150 39 1 1.1357 -3.0461 -5.0732 40 1 -0.6135 -2.7709 -5.2572 41 1 0.5474 -1.6254 -5.9697 42 1 -0.1284 -1.8075 -1.7558 43 1 -0.7856 -3.0327 -2.8670 44 1 0.9494 -3.0312 -2.4696 45 1 1.0688 -2.5556 0.7438 46 1 1.8970 -3.7190 2.7498 47 1 3.3139 -2.5227 4.3697 48 1 3.9088 -0.1653 3.9800 49 1 3.0886 0.9953 1.9692 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609738964.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:17 Heat of formation + Delta-G solvation = -6.658682 kcal Electronic energy + Delta-G solvation = -24291.645185 eV Core-core repulsion = 21217.178149 eV Total energy + Delta-G solvation = -3074.467035 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.63341 -39.45873 -36.62710 -35.31617 -33.94944 -31.74905 -30.37900 -29.30177 -28.02055 -27.93707 -27.36151 -25.57461 -24.29608 -23.34358 -22.28905 -20.51671 -19.62863 -18.45742 -17.67263 -16.76203 -16.48281 -16.27891 -15.81156 -15.62899 -15.47130 -14.77274 -14.66321 -14.57405 -14.35534 -14.08950 -13.92782 -13.76204 -13.55823 -13.23914 -12.92912 -12.82628 -12.77388 -12.66019 -12.64940 -12.44945 -12.35084 -12.05108 -12.02250 -11.86958 -11.63994 -11.44658 -11.41678 -11.33464 -11.10191 -10.82357 -10.52503 -9.76688 -9.53695 -8.87040 -8.15804 -6.24238 0.52111 0.55291 1.40093 1.42687 1.50200 2.41469 2.93441 3.16574 3.31479 3.88189 3.96268 4.07204 4.12899 4.20889 4.22922 4.30238 4.34743 4.42541 4.57864 4.61216 4.68919 4.69639 4.79444 4.83643 4.89625 4.92899 4.98463 5.02757 5.07885 5.15179 5.17087 5.18960 5.20405 5.25997 5.28251 5.30605 5.37395 5.40520 5.49789 5.51580 5.66137 5.66612 5.72762 5.73824 5.84397 5.88314 6.15143 6.19025 6.45910 6.73644 6.94140 7.45038 8.94779 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013353 B = 0.005288 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.351336 B = 5293.383217 C = 6835.231127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.043 4.043 3 H 0.044 0.956 4 C 0.059 3.941 5 N -0.518 5.518 6 C 0.211 3.789 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.001 3.999 10 N -0.939 5.939 11 Si 0.961 3.039 12 H -0.268 1.268 13 H -0.287 1.287 14 H -0.268 1.268 15 C 0.072 3.928 16 C -0.057 4.057 17 C -0.123 4.123 18 C -0.136 4.136 19 C -0.141 4.141 20 C -0.080 4.080 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.132 4.132 24 C -0.125 4.125 25 C -0.142 4.142 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.069 0.931 29 H -0.004 1.004 30 H 0.102 0.898 31 H 0.001 0.999 32 H -0.049 1.049 33 H 0.261 0.739 34 H 0.047 0.953 35 H 0.020 0.980 36 H 0.029 0.971 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.042 0.958 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.050 0.950 45 H 0.133 0.867 46 H 0.148 0.852 47 H 0.146 0.854 48 H 0.136 0.864 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.953 -14.732 8.819 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.062 4.062 3 H 0.062 0.938 4 C -0.068 4.068 5 N -0.241 5.241 6 C 0.084 3.916 7 C -0.546 4.546 8 H 0.085 0.915 9 C -0.197 4.197 10 N -0.580 5.580 11 Si 0.786 3.214 12 H -0.193 1.193 13 H -0.213 1.213 14 H -0.193 1.193 15 C -0.056 4.056 16 C -0.058 4.058 17 C -0.180 4.180 18 C -0.194 4.194 19 C -0.198 4.198 20 C -0.081 4.081 21 C -0.140 4.140 22 C -0.138 4.138 23 C -0.150 4.150 24 C -0.143 4.143 25 C -0.161 4.161 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.014 0.986 30 H 0.120 0.880 31 H 0.019 0.981 32 H -0.031 1.031 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.048 0.952 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.150 0.850 46 H 0.165 0.835 47 H 0.164 0.836 48 H 0.154 0.846 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.295 -14.432 8.867 18.442 hybrid contribution 1.376 1.173 -0.861 2.003 sum -5.919 -13.259 8.006 16.581 Atomic orbital electron populations 1.21639 0.92724 1.02177 1.01149 1.20016 0.97471 0.97628 0.91066 0.93750 1.22436 0.95944 0.98185 0.90282 1.61957 1.53018 1.07154 1.01952 1.19380 0.88827 0.88314 0.95041 1.21455 1.03948 1.06011 1.23204 0.91458 1.25856 0.95251 0.99825 0.98744 1.70095 1.14633 1.27701 1.45550 0.85563 0.78254 0.78143 0.79445 1.19319 1.21254 1.19346 1.22079 0.96263 0.94263 0.92991 1.20473 0.94009 0.95190 0.96095 1.21657 0.97016 0.97940 1.01375 1.21828 1.02262 0.99269 0.96004 1.22073 1.01145 0.98475 0.98100 1.19990 0.97369 0.95165 0.95559 1.21183 1.00626 0.93625 0.98542 1.21478 0.97484 1.00906 0.93934 1.21458 0.98710 0.94443 1.00363 1.21366 1.00021 0.95769 0.97133 1.21253 0.99040 1.00063 0.95701 0.93367 0.92482 0.91177 0.98582 0.87987 0.98132 1.03111 0.93026 0.93450 0.96142 0.95163 0.92218 0.92550 0.92601 0.90987 0.93852 0.91485 0.91495 0.93147 0.84958 0.83457 0.83617 0.84637 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.58 8.12 71.98 0.58 -2.99 16 2 C -0.04 -1.46 2.62 -11.54 -0.03 -1.49 16 3 H 0.04 1.84 6.38 -2.39 -0.02 1.82 16 4 C 0.06 2.15 3.31 86.30 0.29 2.43 16 5 N -0.52 -21.57 2.73 -900.78 -2.46 -24.03 16 6 C 0.21 11.31 4.49 85.56 0.38 11.70 16 7 C -0.51 -28.67 8.22 25.60 0.21 -28.46 16 8 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 9 C 0.00 0.03 5.46 84.65 0.46 0.49 16 10 N -0.94 -57.68 13.29 21.45 0.28 -57.40 16 11 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 15 C 0.07 2.77 3.99 86.30 0.34 3.12 16 16 C -0.06 -1.69 0.85 -52.18 -0.04 -1.73 16 17 C -0.12 -3.86 8.33 71.98 0.60 -3.26 16 18 C -0.14 -3.42 8.45 71.98 0.61 -2.82 16 19 C -0.14 -3.43 6.90 71.98 0.50 -2.93 16 20 C -0.08 -2.39 4.78 -19.87 -0.09 -2.49 16 21 C -0.12 -2.97 8.79 22.27 0.20 -2.77 16 22 C -0.12 -2.44 10.05 22.27 0.22 -2.22 16 23 C -0.13 -2.67 10.05 22.27 0.22 -2.44 16 24 C -0.12 -2.98 10.05 22.27 0.22 -2.76 16 25 C -0.14 -4.21 9.67 22.27 0.22 -4.00 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.93 7.07 -2.38 -0.02 1.92 16 28 H 0.07 1.74 6.03 -2.39 -0.01 1.73 16 29 H 0.00 -0.17 7.99 -2.39 -0.02 -0.19 16 30 H 0.10 3.09 3.85 -2.38 -0.01 3.08 16 31 H 0.00 0.04 6.52 -2.39 -0.02 0.02 16 32 H -0.05 -2.95 8.08 -2.39 -0.02 -2.97 16 33 H 0.26 15.22 8.31 -92.72 -0.77 14.45 16 34 H 0.05 2.12 6.96 -2.39 -0.02 2.10 16 35 H 0.02 0.76 7.80 -2.39 -0.02 0.74 16 36 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 2.01 6.60 -2.39 -0.02 1.99 16 39 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 1.70 4.29 -2.39 -0.01 1.69 16 43 H 0.07 1.34 8.10 -2.39 -0.02 1.32 16 44 H 0.05 1.17 7.34 -2.38 -0.02 1.16 16 45 H 0.13 2.79 7.20 -2.91 -0.02 2.77 16 46 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 47 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 48 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 49 H 0.11 3.33 7.95 -2.91 -0.02 3.31 16 Total: -1.00 -64.91 372.30 5.63 -59.29 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.89 Total: 17.72 kcal Atomic # 6 Polarization: -47.50 SS G_CDS: 4.89 Total: -42.62 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -2.18 Total: -81.43 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.91 5.63 -59.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609738964.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.631 kcal (2) G-P(sol) polarization free energy of solvation -64.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds