Wall clock time and date at job start Tue Mar 31 2020 05:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47027 * 2 1 4 4 C 1.38232 * 120.00649 * 269.72914 * 3 2 1 5 5 C 1.38230 * 120.00569 * 179.76433 * 4 3 2 6 6 C 1.38241 * 119.99845 * 0.48846 * 5 4 3 7 7 C 1.50699 * 120.00381 * 179.76695 * 6 5 4 8 8 N 1.46900 * 109.46824 * 257.91144 * 7 6 5 9 9 C 1.46906 * 110.99652 * 154.14443 * 8 7 6 10 10 C 1.50701 * 109.46562 * 207.38447 * 9 8 7 11 11 H 1.07998 * 120.00535 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99882 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99647 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00258 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47071 * 60.00075 * 14 12 10 16 16 H 1.48496 * 109.47326 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47209 * 300.00520 * 14 12 10 18 18 C 1.46901 * 110.99618 * 278.09155 * 8 7 6 19 19 C 1.52999 * 109.47421 * 311.30429 * 18 8 7 20 20 C 1.52998 * 109.46790 * 89.75900 * 19 18 8 21 21 C 1.52994 * 109.47300 * 209.76466 * 19 18 8 22 22 C 1.53001 * 109.47165 * 329.76339 * 19 18 8 23 23 C 1.38235 * 119.99767 * 359.78607 * 6 5 4 24 24 C 1.38240 * 120.00256 * 359.96046 * 23 6 5 25 25 H 1.08996 * 109.47512 * 59.99923 * 1 2 3 26 26 H 1.09003 * 109.47479 * 299.99263 * 1 2 3 27 27 H 1.09009 * 109.47133 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47195 * 120.00490 * 2 1 3 29 29 H 1.09005 * 109.47175 * 240.00299 * 2 1 3 30 30 H 1.08003 * 119.99550 * 359.97438 * 4 3 2 31 31 H 1.07991 * 120.00415 * 180.25212 * 5 4 3 32 32 H 1.09006 * 109.46752 * 17.90675 * 7 6 5 33 33 H 1.08998 * 109.47301 * 137.90651 * 7 6 5 34 34 H 1.08995 * 109.46995 * 327.37932 * 9 8 7 35 35 H 1.08996 * 109.47008 * 87.38626 * 9 8 7 36 36 H 0.97005 * 119.99527 * 179.97438 * 13 12 10 37 37 H 1.08993 * 109.47001 * 71.30613 * 18 8 7 38 38 H 1.08999 * 109.46930 * 191.30550 * 18 8 7 39 39 H 1.09003 * 109.47090 * 53.15553 * 20 19 18 40 40 H 1.09003 * 109.46652 * 173.15104 * 20 19 18 41 41 H 1.08997 * 109.47491 * 293.15067 * 20 19 18 42 42 H 1.08993 * 109.47352 * 59.99935 * 21 19 18 43 43 H 1.09007 * 109.47181 * 180.02562 * 21 19 18 44 44 H 1.09002 * 109.46777 * 299.99640 * 21 19 18 45 45 H 1.09008 * 109.47189 * 37.24916 * 22 19 18 46 46 H 1.09000 * 109.47085 * 157.24583 * 22 19 18 47 47 H 1.09002 * 109.47050 * 277.25037 * 22 19 18 48 48 H 1.07994 * 120.00134 * 179.97438 * 23 6 5 49 49 H 1.07996 * 119.99871 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2680 2.0707 -1.1970 5 6 2.7241 3.3756 -1.1970 6 6 2.9541 4.0273 0.0002 7 6 3.4564 5.4482 0.0003 8 7 4.8963 5.4584 0.2908 9 6 5.5392 6.6515 -0.2761 10 6 6.9861 6.3502 -0.5710 11 1 7.3877 5.3704 -0.3589 12 6 7.7968 7.3251 -1.1125 13 7 7.3075 8.5182 -1.3712 14 14 9.5900 6.9515 -1.4787 15 1 9.6738 5.8336 -2.4525 16 1 10.2400 8.1575 -2.0516 17 1 10.2820 6.5664 -0.2224 18 6 5.1424 5.3643 1.7360 19 6 4.2668 6.3819 2.4698 20 6 2.9245 5.7385 2.8235 21 6 4.9711 6.8303 3.7519 22 6 4.0290 7.5947 1.5678 23 6 2.7238 3.3756 1.1973 24 6 2.2627 2.0724 1.1973 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.0926 1.5600 -2.1324 31 1 2.9044 3.8846 -2.1322 32 1 3.2798 5.8960 -0.9777 33 1 2.9278 6.0204 0.7627 34 1 5.0317 6.9341 -1.1984 35 1 5.4773 7.4719 0.4388 36 1 7.8780 9.2042 -1.7518 37 1 4.8990 4.3596 2.0813 38 1 6.1923 5.5743 1.9402 39 1 3.0988 4.8077 3.3633 40 1 2.3490 6.4198 3.4503 41 1 2.3694 5.5298 1.9090 42 1 5.9273 7.2886 3.4999 43 1 4.3470 7.5550 4.2750 44 1 5.1404 5.9663 4.3945 45 1 3.9147 7.2630 0.5357 46 1 3.1238 8.1120 1.8856 47 1 4.8793 8.2730 1.6393 48 1 2.9039 3.8846 2.1326 49 1 2.0824 1.5634 2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609767266.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:34 Heat of formation + Delta-G solvation = 71.643520 kcal Electronic energy + Delta-G solvation = -24257.723107 eV Core-core repulsion = 21186.651510 eV Total energy + Delta-G solvation = -3071.071597 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.26729 -38.56053 -34.45242 -33.81424 -32.25798 -30.73770 -30.10482 -27.79036 -27.35201 -26.67200 -25.85780 -23.98521 -22.51688 -22.31823 -20.62788 -19.97369 -18.47889 -16.54996 -15.89673 -15.62761 -15.13891 -15.04653 -14.67034 -14.15761 -14.10755 -13.72016 -13.55112 -13.31305 -13.22395 -13.06231 -12.71796 -12.32556 -12.01284 -11.78372 -11.70256 -11.36323 -11.24830 -11.20059 -11.04784 -10.99180 -10.87032 -10.76302 -10.61455 -10.53270 -10.35393 -10.29658 -9.89250 -9.68006 -9.63486 -9.08534 -8.55770 -8.34084 -8.14247 -6.98585 -5.94665 -3.94488 1.68671 1.75407 3.37070 3.40811 3.44607 4.05661 4.49096 4.84494 4.92536 5.07255 5.18082 5.21394 5.26116 5.26612 5.33891 5.38448 5.41995 5.45616 5.54476 5.64629 5.76274 5.78170 5.82821 5.87486 5.96386 5.98679 6.00631 6.04191 6.09533 6.15174 6.19130 6.29178 6.32455 6.41728 6.45388 6.52111 6.60360 6.72022 6.76477 6.83969 6.88034 6.91620 7.08738 7.27924 7.37411 7.49067 7.91021 8.19447 8.28963 8.63703 9.12471 9.68081 11.14373 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015886 B = 0.004614 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.175658 B = 6067.069327 C = 7171.152636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.098 4.098 4 C -0.120 4.120 5 C -0.105 4.105 6 C -0.056 4.056 7 C 0.052 3.948 8 N -0.523 5.523 9 C 0.161 3.839 10 C -0.498 4.498 11 H 0.059 0.941 12 C 0.054 3.946 13 N -0.902 5.902 14 Si 0.894 3.106 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.278 1.278 18 C 0.069 3.931 19 C -0.102 4.102 20 C -0.163 4.163 21 C -0.135 4.135 22 C -0.168 4.168 23 C -0.137 4.137 24 C -0.122 4.122 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.022 0.978 35 H 0.038 0.962 36 H 0.260 0.740 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.048 0.952 45 H 0.092 0.908 46 H 0.036 0.964 47 H 0.066 0.934 48 H 0.141 0.859 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.858 -10.270 6.532 17.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.099 4.099 4 C -0.138 4.138 5 C -0.124 4.124 6 C -0.057 4.057 7 C -0.075 4.075 8 N -0.245 5.245 9 C 0.037 3.963 10 C -0.537 4.537 11 H 0.078 0.922 12 C -0.147 4.147 13 N -0.543 5.543 14 Si 0.722 3.278 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.204 1.204 18 C -0.060 4.060 19 C -0.104 4.104 20 C -0.219 4.219 21 C -0.192 4.192 22 C -0.225 4.225 23 C -0.155 4.155 24 C -0.140 4.140 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.131 0.869 31 H 0.136 0.864 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.040 0.960 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.110 0.890 46 H 0.055 0.945 47 H 0.085 0.915 48 H 0.159 0.841 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.573 -10.493 6.204 17.512 hybrid contribution 0.800 0.548 0.050 0.970 sum -11.774 -9.945 6.253 16.632 Atomic orbital electron populations 1.21741 0.95157 1.01206 1.02133 1.20484 0.95817 0.93262 1.02359 1.19757 1.00780 0.95877 0.93446 1.20912 1.00855 0.95022 0.97060 1.21071 0.98821 0.94528 0.97984 1.20030 0.96083 0.96870 0.92710 1.21927 0.91604 0.91922 1.02048 1.62219 1.07325 1.44031 1.10939 1.20611 0.93992 0.86790 0.94915 1.21222 0.94450 0.97862 1.40208 0.92240 1.24943 0.98493 0.95080 0.96145 1.69937 1.36012 1.03350 1.44967 0.86626 0.85125 0.77440 0.78585 1.20341 1.21514 1.20404 1.22296 0.99630 0.96296 0.87755 1.21199 0.95789 0.97127 0.96261 1.22793 0.97420 0.99848 1.01836 1.21852 1.00450 1.00339 0.96593 1.22942 1.00467 0.97302 1.01758 1.21896 0.99253 0.94899 0.99408 1.20934 1.01019 0.95164 0.96926 0.92652 0.92680 0.92819 0.91473 0.91439 0.86862 0.86351 0.91207 0.90464 0.96011 0.94460 0.93074 0.92337 0.90341 0.92464 0.93334 0.90180 0.92244 0.93505 0.93243 0.89000 0.94548 0.91477 0.84144 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.89 37.16 0.37 -0.91 16 2 C -0.08 -0.83 6.07 -27.89 -0.17 -1.00 16 3 C -0.10 -1.28 5.13 -104.62 -0.54 -1.82 16 4 C -0.12 -1.67 9.70 -39.59 -0.38 -2.06 16 5 C -0.11 -1.66 9.67 -39.58 -0.38 -2.04 16 6 C -0.06 -0.92 5.30 -104.62 -0.55 -1.47 16 7 C 0.05 0.92 3.71 -4.98 -0.02 0.90 16 8 N -0.52 -10.88 4.46 -237.52 -1.06 -11.94 16 9 C 0.16 3.99 3.40 -4.97 -0.02 3.98 16 10 C -0.50 -13.93 8.95 -34.44 -0.31 -14.24 16 11 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 12 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 13 N -0.90 -26.44 13.29 55.43 0.74 -25.71 16 14 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 C 0.07 1.28 4.84 -3.82 -0.02 1.26 16 19 C -0.10 -1.61 0.77 -154.51 -0.12 -1.73 16 20 C -0.16 -2.16 6.38 37.16 0.24 -1.92 16 21 C -0.13 -1.95 8.19 37.15 0.30 -1.65 16 22 C -0.17 -2.96 6.20 37.16 0.23 -2.73 16 23 C -0.14 -2.02 7.68 -39.58 -0.30 -2.32 16 24 C -0.12 -1.64 9.70 -39.58 -0.38 -2.02 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 28 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 29 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 31 H 0.12 1.82 8.02 -52.49 -0.42 1.40 16 32 H 0.07 1.29 7.23 -51.93 -0.38 0.92 16 33 H 0.08 1.27 2.35 -51.93 -0.12 1.15 16 34 H 0.02 0.59 7.37 -51.93 -0.38 0.21 16 35 H 0.04 0.95 3.85 -51.93 -0.20 0.75 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.06 1.01 6.12 -51.93 -0.32 0.70 16 38 H 0.08 1.62 7.37 -51.93 -0.38 1.24 16 39 H 0.06 0.70 6.42 -51.93 -0.33 0.36 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.10 3.58 -51.93 -0.19 0.91 16 42 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 43 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 1.77 2.69 -51.92 -0.14 1.63 16 46 H 0.04 0.56 7.94 -51.93 -0.41 0.15 16 47 H 0.07 1.33 6.75 -51.93 -0.35 0.98 16 48 H 0.14 1.93 2.67 -52.49 -0.14 1.79 16 49 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -29.19 357.37 -10.06 -39.25 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.95 Total: 4.53 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: -2.15 Total: -28.36 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -0.32 Total: -37.65 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.19 -10.06 -39.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609767266.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.894 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds