Wall clock time and date at job start Tue Mar 31 2020 05:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47027 * 2 1 4 4 C 1.38232 * 120.00649 * 269.72914 * 3 2 1 5 5 C 1.38230 * 120.00569 * 179.76433 * 4 3 2 6 6 C 1.38241 * 119.99845 * 0.48846 * 5 4 3 7 7 C 1.50699 * 120.00381 * 179.76695 * 6 5 4 8 8 N 1.46900 * 109.46824 * 257.91144 * 7 6 5 9 9 C 1.46906 * 110.99652 * 154.14443 * 8 7 6 10 10 C 1.50701 * 109.46562 * 207.38447 * 9 8 7 11 11 H 1.07998 * 120.00535 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99882 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99647 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00258 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47071 * 60.00075 * 14 12 10 16 16 H 1.48496 * 109.47326 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47209 * 300.00520 * 14 12 10 18 18 C 1.46901 * 110.99618 * 278.09155 * 8 7 6 19 19 C 1.52999 * 109.47421 * 311.30429 * 18 8 7 20 20 C 1.52998 * 109.46790 * 89.75900 * 19 18 8 21 21 C 1.52994 * 109.47300 * 209.76466 * 19 18 8 22 22 C 1.53001 * 109.47165 * 329.76339 * 19 18 8 23 23 C 1.38235 * 119.99767 * 359.78607 * 6 5 4 24 24 C 1.38240 * 120.00256 * 359.96046 * 23 6 5 25 25 H 1.08996 * 109.47512 * 59.99923 * 1 2 3 26 26 H 1.09003 * 109.47479 * 299.99263 * 1 2 3 27 27 H 1.09009 * 109.47133 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47195 * 120.00490 * 2 1 3 29 29 H 1.09005 * 109.47175 * 240.00299 * 2 1 3 30 30 H 1.08003 * 119.99550 * 359.97438 * 4 3 2 31 31 H 1.07991 * 120.00415 * 180.25212 * 5 4 3 32 32 H 1.09006 * 109.46752 * 17.90675 * 7 6 5 33 33 H 1.08998 * 109.47301 * 137.90651 * 7 6 5 34 34 H 1.08995 * 109.46995 * 327.37932 * 9 8 7 35 35 H 1.08996 * 109.47008 * 87.38626 * 9 8 7 36 36 H 0.97005 * 119.99527 * 179.97438 * 13 12 10 37 37 H 1.08993 * 109.47001 * 71.30613 * 18 8 7 38 38 H 1.08999 * 109.46930 * 191.30550 * 18 8 7 39 39 H 1.09003 * 109.47090 * 53.15553 * 20 19 18 40 40 H 1.09003 * 109.46652 * 173.15104 * 20 19 18 41 41 H 1.08997 * 109.47491 * 293.15067 * 20 19 18 42 42 H 1.08993 * 109.47352 * 59.99935 * 21 19 18 43 43 H 1.09007 * 109.47181 * 180.02562 * 21 19 18 44 44 H 1.09002 * 109.46777 * 299.99640 * 21 19 18 45 45 H 1.09008 * 109.47189 * 37.24916 * 22 19 18 46 46 H 1.09000 * 109.47085 * 157.24583 * 22 19 18 47 47 H 1.09002 * 109.47050 * 277.25037 * 22 19 18 48 48 H 1.07994 * 120.00134 * 179.97438 * 23 6 5 49 49 H 1.07996 * 119.99871 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2680 2.0707 -1.1970 5 6 2.7241 3.3756 -1.1970 6 6 2.9541 4.0273 0.0002 7 6 3.4564 5.4482 0.0003 8 7 4.8963 5.4584 0.2908 9 6 5.5392 6.6515 -0.2761 10 6 6.9861 6.3502 -0.5710 11 1 7.3877 5.3704 -0.3589 12 6 7.7968 7.3251 -1.1125 13 7 7.3075 8.5182 -1.3712 14 14 9.5900 6.9515 -1.4787 15 1 9.6738 5.8336 -2.4525 16 1 10.2400 8.1575 -2.0516 17 1 10.2820 6.5664 -0.2224 18 6 5.1424 5.3643 1.7360 19 6 4.2668 6.3819 2.4698 20 6 2.9245 5.7385 2.8235 21 6 4.9711 6.8303 3.7519 22 6 4.0290 7.5947 1.5678 23 6 2.7238 3.3756 1.1973 24 6 2.2627 2.0724 1.1973 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.0926 1.5600 -2.1324 31 1 2.9044 3.8846 -2.1322 32 1 3.2798 5.8960 -0.9777 33 1 2.9278 6.0204 0.7627 34 1 5.0317 6.9341 -1.1984 35 1 5.4773 7.4719 0.4388 36 1 7.8780 9.2042 -1.7518 37 1 4.8990 4.3596 2.0813 38 1 6.1923 5.5743 1.9402 39 1 3.0988 4.8077 3.3633 40 1 2.3490 6.4198 3.4503 41 1 2.3694 5.5298 1.9090 42 1 5.9273 7.2886 3.4999 43 1 4.3470 7.5550 4.2750 44 1 5.1404 5.9663 4.3945 45 1 3.9147 7.2630 0.5357 46 1 3.1238 8.1120 1.8856 47 1 4.8793 8.2730 1.6393 48 1 2.9039 3.8846 2.1326 49 1 2.0824 1.5634 2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609767266.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:34 Heat of formation + Delta-G solvation = 56.885766 kcal Electronic energy + Delta-G solvation = -24258.363052 eV Core-core repulsion = 21186.651510 eV Total energy + Delta-G solvation = -3071.711541 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64660 -39.73445 -35.68547 -35.30549 -34.08260 -31.86619 -31.30256 -29.39304 -28.66708 -28.19553 -27.12009 -25.50337 -23.77952 -23.43321 -22.15063 -21.19090 -19.80578 -18.55462 -17.16220 -16.89314 -16.71295 -16.40158 -16.12805 -15.60330 -15.49467 -14.98379 -14.61527 -14.47469 -14.42140 -14.25249 -14.02920 -13.75571 -13.20717 -13.13224 -12.97304 -12.83779 -12.72101 -12.58253 -12.41296 -12.33209 -12.31303 -12.13840 -12.00425 -11.88622 -11.72324 -11.57992 -11.43712 -11.39790 -11.09505 -10.90132 -10.47041 -9.67445 -9.30786 -8.65704 -8.10452 -6.20766 0.55722 0.63458 1.39118 1.41502 1.49371 2.42063 2.90949 3.17130 3.59880 3.89491 3.92114 3.95535 3.99241 4.09257 4.16197 4.27009 4.27785 4.43194 4.57491 4.58607 4.59834 4.67099 4.70674 4.73713 4.80499 4.81896 4.85182 4.93877 4.99585 5.08471 5.13366 5.15780 5.16790 5.21776 5.26100 5.32516 5.33605 5.35559 5.44477 5.47160 5.52463 5.55777 5.66225 5.76263 5.83014 5.91339 6.19407 6.27261 6.54515 6.74121 6.94440 7.46519 8.95031 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015886 B = 0.004614 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.175658 B = 6067.069327 C = 7171.152636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 C -0.095 4.095 4 C -0.126 4.126 5 C -0.126 4.126 6 C -0.078 4.078 7 C 0.059 3.941 8 N -0.536 5.536 9 C 0.178 3.822 10 C -0.517 4.517 11 H 0.049 0.951 12 C 0.004 3.996 13 N -0.933 5.933 14 Si 0.958 3.042 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.270 1.270 18 C 0.072 3.928 19 C -0.097 4.097 20 C -0.157 4.157 21 C -0.131 4.131 22 C -0.165 4.165 23 C -0.139 4.139 24 C -0.124 4.124 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.130 0.870 31 H 0.107 0.893 32 H 0.047 0.953 33 H 0.095 0.905 34 H -0.012 1.012 35 H 0.032 0.968 36 H 0.262 0.738 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.035 0.965 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.059 0.941 47 H 0.036 0.964 48 H 0.152 0.848 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.889 -12.506 8.373 20.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.095 4.095 4 C -0.144 4.144 5 C -0.145 4.145 6 C -0.079 4.079 7 C -0.067 4.067 8 N -0.258 5.258 9 C 0.053 3.947 10 C -0.556 4.556 11 H 0.067 0.933 12 C -0.193 4.193 13 N -0.574 5.574 14 Si 0.784 3.216 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.195 1.195 18 C -0.057 4.057 19 C -0.099 4.099 20 C -0.212 4.212 21 C -0.188 4.188 22 C -0.221 4.221 23 C -0.157 4.157 24 C -0.142 4.142 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.148 0.852 31 H 0.125 0.875 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.006 0.994 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.054 0.946 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.055 0.945 48 H 0.169 0.831 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.617 -12.743 8.054 20.314 hybrid contribution 1.058 1.192 -0.539 1.683 sum -12.558 -11.551 7.515 18.645 Atomic orbital electron populations 1.21720 0.94063 1.02330 1.01854 1.20553 0.96646 0.91261 1.03366 1.20158 0.99247 0.97251 0.92879 1.21136 1.00476 0.94270 0.98540 1.21158 1.00074 0.95700 0.97585 1.19923 0.97981 0.96103 0.93884 1.21864 0.89872 0.93664 1.01324 1.62102 1.09347 1.41812 1.12568 1.20271 0.92657 0.88289 0.93505 1.21555 0.96232 0.97452 1.40355 0.93285 1.25749 1.02826 0.94868 0.95889 1.70056 1.37536 1.04172 1.45613 0.85606 0.79972 0.77411 0.78628 1.19975 1.20777 1.19491 1.22273 0.98603 0.98065 0.86733 1.21133 0.97131 0.95556 0.96086 1.22697 0.95452 1.00963 1.02128 1.21808 0.99408 1.01468 0.96160 1.22818 1.00199 0.97870 1.01240 1.22028 0.99134 0.95600 0.98943 1.21280 1.00010 0.94617 0.98288 0.93229 0.92703 0.91036 0.90170 0.90802 0.85204 0.87459 0.93441 0.88815 0.99368 0.95044 0.92951 0.90628 0.93301 0.90531 0.91297 0.90760 0.94621 0.91684 0.91252 0.91136 0.92167 0.94529 0.83073 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.89 71.98 0.71 -1.36 16 2 C -0.08 -1.37 6.07 29.85 0.18 -1.19 16 3 C -0.10 -2.24 5.13 -19.87 -0.10 -2.34 16 4 C -0.13 -3.38 9.70 22.27 0.22 -3.16 16 5 C -0.13 -4.06 9.67 22.27 0.22 -3.84 16 6 C -0.08 -2.57 5.30 -19.86 -0.11 -2.67 16 7 C 0.06 2.18 3.71 85.56 0.32 2.50 16 8 N -0.54 -23.24 4.46 -905.37 -4.04 -27.28 16 9 C 0.18 9.38 3.40 85.56 0.29 9.67 16 10 C -0.52 -30.16 8.95 25.60 0.23 -29.93 16 11 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 12 C 0.00 0.24 5.46 84.66 0.46 0.70 16 13 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 14 Si 0.96 45.72 29.54 68.60 2.03 47.75 16 15 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 16 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 18 C 0.07 2.68 4.84 86.30 0.42 3.10 16 19 C -0.10 -3.00 0.77 -52.18 -0.04 -3.04 16 20 C -0.16 -3.71 6.38 71.98 0.46 -3.25 16 21 C -0.13 -3.61 8.19 71.98 0.59 -3.02 16 22 C -0.16 -5.93 6.20 71.98 0.45 -5.48 16 23 C -0.14 -3.85 7.68 22.27 0.17 -3.68 16 24 C -0.12 -2.96 9.70 22.27 0.22 -2.75 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 29 H 0.07 1.18 8.08 -2.38 -0.02 1.16 16 30 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16 31 H 0.11 3.53 8.02 -2.92 -0.02 3.51 16 32 H 0.05 1.91 7.23 -2.38 -0.02 1.89 16 33 H 0.09 3.11 2.35 -2.39 -0.01 3.10 16 34 H -0.01 -0.68 7.37 -2.39 -0.02 -0.70 16 35 H 0.03 1.71 3.85 -2.39 -0.01 1.70 16 36 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 37 H 0.08 2.54 6.12 -2.39 -0.01 2.53 16 38 H 0.05 2.09 7.37 -2.39 -0.02 2.07 16 39 H 0.08 1.56 6.42 -2.39 -0.02 1.54 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.88 3.58 -2.39 -0.01 1.87 16 42 H 0.03 1.13 8.09 -2.39 -0.02 1.12 16 43 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.07 2.85 2.69 -2.38 -0.01 2.85 16 46 H 0.06 1.83 7.94 -2.39 -0.02 1.81 16 47 H 0.04 1.52 6.75 -2.39 -0.02 1.50 16 48 H 0.15 3.73 2.67 -2.91 -0.01 3.72 16 49 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -65.40 357.37 3.87 -61.53 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.93 Total: 24.00 kcal Atomic # 6 Polarization: -54.42 SS G_CDS: 4.68 Total: -49.74 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -3.76 Total: -83.54 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -65.40 3.87 -61.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609767266.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.411 kcal (2) G-P(sol) polarization free energy of solvation -65.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds