Wall clock time and date at job start Tue Mar 31 2020 05:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 N 1.46893 * 109.47367 * 270.02141 * 7 6 5 9 9 C 1.46904 * 111.00287 * 293.95326 * 8 7 6 10 10 C 1.50699 * 109.46858 * 69.99858 * 9 8 7 11 11 H 1.07997 * 120.00398 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99931 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99727 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00019 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47225 * 90.00332 * 14 12 10 16 16 H 1.48501 * 109.47100 * 210.00001 * 14 12 10 17 17 H 1.48504 * 109.47426 * 330.00200 * 14 12 10 18 18 C 1.46906 * 111.00309 * 169.99739 * 8 7 6 19 19 C 1.52995 * 109.47559 * 190.00187 * 18 8 7 20 20 C 1.52995 * 109.47609 * 180.02562 * 19 18 8 21 21 C 1.53003 * 109.47281 * 64.99578 * 20 19 18 22 22 C 1.52991 * 109.47604 * 185.00124 * 20 19 18 23 23 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 24 24 C 1.38230 * 119.99880 * 359.95582 * 23 6 5 25 25 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 30 30 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 31 31 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 32 32 H 1.09002 * 109.47060 * 30.02215 * 7 6 5 33 33 H 1.09001 * 109.47380 * 150.02303 * 7 6 5 34 34 H 1.09002 * 109.46967 * 189.99871 * 9 8 7 35 35 H 1.08995 * 109.46962 * 310.00084 * 9 8 7 36 36 H 0.97008 * 120.00092 * 179.97438 * 13 12 10 37 37 H 1.09002 * 109.46775 * 310.00392 * 18 8 7 38 38 H 1.09006 * 109.46871 * 70.00222 * 18 8 7 39 39 H 1.09000 * 109.46834 * 300.00256 * 19 18 8 40 40 H 1.09002 * 109.47180 * 59.99624 * 19 18 8 41 41 H 1.09005 * 109.46524 * 305.00134 * 20 19 18 42 42 H 1.08994 * 109.46901 * 180.02562 * 21 20 19 43 43 H 1.09000 * 109.46997 * 300.00992 * 21 20 19 44 44 H 1.09003 * 109.46795 * 60.00238 * 21 20 19 45 45 H 1.09003 * 109.47512 * 59.99516 * 22 20 19 46 46 H 1.09002 * 109.47688 * 179.97438 * 22 20 19 47 47 H 1.09003 * 109.46792 * 299.99958 * 22 20 19 48 48 H 1.08008 * 119.99983 * 179.97438 * 23 6 5 49 49 H 1.08007 * 119.99843 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 7 4.9256 5.4480 0.0001 9 6 5.4522 4.8912 1.2534 10 6 5.1785 3.4100 1.2990 11 1 4.6652 2.9301 0.4788 12 6 5.5835 2.6673 2.3878 13 7 6.2089 3.2515 3.3863 14 14 5.2437 0.8314 2.4447 15 1 6.3819 0.0982 1.8347 16 1 5.0780 0.4022 3.8566 17 1 4.0009 0.5343 1.6879 18 6 5.4521 6.7987 -0.2381 19 6 6.9611 6.7228 -0.4791 20 6 7.5095 8.1294 -0.7265 21 6 7.3437 8.9716 0.5401 22 6 8.9930 8.0419 -1.0902 23 6 2.7240 3.3755 1.1972 24 6 2.2628 2.0724 1.1971 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.0927 1.5598 -2.1325 31 1 2.9047 3.8844 -2.1324 32 1 3.0933 5.9619 -0.8899 33 1 3.0934 5.9618 0.8901 34 1 6.5272 5.0639 1.3043 35 1 4.9657 5.3767 2.0993 36 1 6.4935 2.7291 4.1525 37 1 4.9656 7.2291 -1.1134 38 1 5.2542 7.4244 0.6322 39 1 7.4475 6.2923 0.3962 40 1 7.1590 6.0969 -1.3493 41 1 6.9613 8.5941 -1.5460 42 1 7.7340 9.9738 0.3637 43 1 6.2868 9.0339 0.7992 44 1 7.8919 8.5069 1.3597 45 1 9.1111 7.4420 -1.9925 46 1 9.3836 9.0440 -1.2669 47 1 9.5411 7.5772 -0.2706 48 1 2.9041 3.8846 2.1326 49 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610391954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:24 Heat of formation + Delta-G solvation = 8.729862 kcal Electronic energy + Delta-G solvation = -23989.980278 eV Core-core repulsion = 20916.180540 eV Total energy + Delta-G solvation = -3073.799738 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.09596 -37.35947 -35.52416 -33.46050 -32.58617 -30.08225 -29.99845 -28.19206 -27.09375 -26.96197 -24.55990 -22.86151 -22.29124 -21.82670 -20.42109 -19.50544 -19.37797 -16.54094 -15.51119 -15.30144 -14.92548 -14.77037 -14.56538 -14.24989 -13.82719 -13.39770 -13.36025 -13.14359 -12.98807 -12.72834 -12.54512 -12.25399 -12.15214 -11.98294 -11.82951 -11.45458 -11.32455 -11.22053 -11.09247 -10.93488 -10.76609 -10.61029 -10.51616 -10.41127 -10.27041 -10.07335 -10.00120 -9.82539 -9.47623 -9.17700 -8.43667 -7.82756 -7.35463 -7.21641 -6.02624 -3.91131 2.22915 2.40339 3.34536 3.42718 3.51600 4.43478 4.57462 4.98428 5.15326 5.21801 5.26663 5.32376 5.37102 5.40299 5.63351 5.66707 5.70891 5.78581 5.82492 5.85855 5.91585 5.95257 5.97559 6.00988 6.05268 6.08703 6.10890 6.19912 6.21933 6.26325 6.34489 6.40368 6.43037 6.44261 6.47783 6.62991 6.75404 6.85205 6.92565 6.99821 7.24075 7.32614 7.36471 7.48741 7.63442 7.87998 7.95909 8.13043 8.21303 8.57668 9.09950 9.62171 11.06988 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.004969 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.466091 B = 5633.557767 C = 6694.185095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 C -0.084 4.084 4 C -0.151 4.151 5 C -0.105 4.105 6 C -0.068 4.068 7 C 0.108 3.892 8 N -0.534 5.534 9 C 0.187 3.813 10 C -0.489 4.489 11 H 0.085 0.915 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.867 3.133 15 H -0.286 1.286 16 H -0.292 1.292 17 H -0.240 1.240 18 C 0.058 3.942 19 C -0.110 4.110 20 C -0.095 4.095 21 C -0.148 4.148 22 C -0.145 4.145 23 C -0.019 4.019 24 C -0.142 4.142 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.059 0.941 33 H 0.027 0.973 34 H 0.034 0.966 35 H -0.012 1.012 36 H 0.259 0.741 37 H 0.055 0.945 38 H 0.023 0.977 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.116 0.884 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.174 3.883 -7.171 9.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.084 4.084 4 C -0.169 4.169 5 C -0.124 4.124 6 C -0.069 4.069 7 C -0.020 4.020 8 N -0.259 5.259 9 C 0.062 3.938 10 C -0.526 4.526 11 H 0.103 0.897 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.694 3.306 15 H -0.212 1.212 16 H -0.218 1.218 17 H -0.164 1.164 18 C -0.070 4.070 19 C -0.148 4.148 20 C -0.114 4.114 21 C -0.205 4.205 22 C -0.202 4.202 23 C -0.038 4.038 24 C -0.160 4.160 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.006 0.994 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.134 0.866 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.928 3.559 -7.369 9.553 hybrid contribution 0.034 -0.582 0.988 1.147 sum -4.894 2.977 -6.382 8.575 Atomic orbital electron populations 1.21722 0.95476 1.00761 1.01969 1.20476 0.95463 0.94055 1.01989 1.19554 1.00261 0.95075 0.93506 1.20575 1.04637 0.95327 0.96390 1.20663 1.00198 0.94588 0.96957 1.19371 0.98494 0.96074 0.92946 1.20796 0.89151 0.93084 0.98949 1.62201 1.05218 1.18804 1.39646 1.19857 0.95626 0.94969 0.83324 1.21715 1.34600 0.92616 1.03685 0.89740 1.24928 0.95392 0.98250 0.95852 1.69978 1.39469 1.35945 1.08134 0.86981 0.80345 0.86030 0.77229 1.21240 1.21848 1.16356 1.22046 0.95334 0.90824 0.98818 1.21641 0.95263 0.95062 1.02789 1.21095 0.96054 0.96602 0.97656 1.21887 1.01843 0.98890 0.97893 1.21818 0.96093 1.00890 1.01428 1.20717 0.91253 0.94132 0.97669 1.20619 1.03657 0.95237 0.96507 0.92797 0.92718 0.93219 0.91758 0.91867 0.87850 0.87534 0.92232 0.95489 0.94824 0.99401 0.93127 0.92607 0.95887 0.91141 0.91599 0.91817 0.93474 0.92571 0.92614 0.92844 0.93314 0.92663 0.86565 0.87883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.89 37.16 0.37 -1.43 16 2 C -0.08 -1.26 6.06 -27.89 -0.17 -1.43 16 3 C -0.08 -1.52 4.94 -104.63 -0.52 -2.04 16 4 C -0.15 -2.69 9.70 -39.58 -0.38 -3.07 16 5 C -0.11 -1.95 9.50 -39.59 -0.38 -2.33 16 6 C -0.07 -1.36 3.46 -104.62 -0.36 -1.72 16 7 C 0.11 2.06 5.11 -4.98 -0.03 2.04 16 8 N -0.53 -11.15 4.56 -237.51 -1.08 -12.24 16 9 C 0.19 4.66 4.53 -4.97 -0.02 4.63 16 10 C -0.49 -12.87 5.37 -34.44 -0.18 -13.05 16 11 H 0.08 2.25 4.72 -52.49 -0.25 2.00 16 12 C 0.06 1.57 5.44 -17.82 -0.10 1.47 16 13 N -0.90 -25.93 13.29 55.43 0.74 -25.19 16 14 Si 0.87 20.99 28.39 -169.99 -4.83 16.17 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.24 -5.43 4.93 56.52 0.28 -5.15 16 18 C 0.06 1.02 4.71 -3.82 -0.02 1.00 16 19 C -0.11 -1.83 4.64 -26.74 -0.12 -1.95 16 20 C -0.10 -1.27 2.92 -90.63 -0.26 -1.53 16 21 C -0.15 -1.92 8.95 37.16 0.33 -1.59 16 22 C -0.14 -1.76 9.19 37.15 0.34 -1.42 16 23 C -0.02 -0.40 5.88 -39.58 -0.23 -0.63 16 24 C -0.14 -2.81 6.68 -39.59 -0.26 -3.07 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 29 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 30 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 31 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.06 1.00 7.88 -51.93 -0.41 0.59 16 33 H 0.03 0.52 7.96 -51.93 -0.41 0.11 16 34 H 0.03 0.90 5.98 -51.93 -0.31 0.59 16 35 H -0.01 -0.32 7.99 -51.93 -0.41 -0.73 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.06 0.88 7.93 -51.93 -0.41 0.46 16 38 H 0.02 0.41 6.54 -51.93 -0.34 0.07 16 39 H 0.07 1.35 6.31 -51.93 -0.33 1.02 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.74 6.56 -51.93 -0.34 0.40 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.12 2.61 7.68 -52.48 -0.40 2.20 16 49 H 0.10 1.98 7.90 -52.48 -0.41 1.57 16 LS Contribution 371.83 15.07 5.60 5.60 Total: -1.00 -28.13 371.83 -10.77 -38.91 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -9.20 Total: 2.87 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -2.00 Total: -26.12 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.35 Total: -37.43 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.83 Total: 16.17 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.13 -10.77 -38.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610391954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.636 kcal (2) G-P(sol) polarization free energy of solvation -28.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds