Wall clock time and date at job start Tue Mar 31 2020 05:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 N 1.46893 * 109.47367 * 270.02141 * 7 6 5 9 9 C 1.46904 * 111.00287 * 293.95326 * 8 7 6 10 10 C 1.50699 * 109.46858 * 69.99858 * 9 8 7 11 11 H 1.07997 * 120.00398 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99931 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99727 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00019 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47225 * 90.00332 * 14 12 10 16 16 H 1.48501 * 109.47100 * 210.00001 * 14 12 10 17 17 H 1.48504 * 109.47426 * 330.00200 * 14 12 10 18 18 C 1.46906 * 111.00309 * 169.99739 * 8 7 6 19 19 C 1.52995 * 109.47559 * 190.00187 * 18 8 7 20 20 C 1.52995 * 109.47609 * 180.02562 * 19 18 8 21 21 C 1.53003 * 109.47281 * 64.99578 * 20 19 18 22 22 C 1.52991 * 109.47604 * 185.00124 * 20 19 18 23 23 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 24 24 C 1.38230 * 119.99880 * 359.95582 * 23 6 5 25 25 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 30 30 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 31 31 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 32 32 H 1.09002 * 109.47060 * 30.02215 * 7 6 5 33 33 H 1.09001 * 109.47380 * 150.02303 * 7 6 5 34 34 H 1.09002 * 109.46967 * 189.99871 * 9 8 7 35 35 H 1.08995 * 109.46962 * 310.00084 * 9 8 7 36 36 H 0.97008 * 120.00092 * 179.97438 * 13 12 10 37 37 H 1.09002 * 109.46775 * 310.00392 * 18 8 7 38 38 H 1.09006 * 109.46871 * 70.00222 * 18 8 7 39 39 H 1.09000 * 109.46834 * 300.00256 * 19 18 8 40 40 H 1.09002 * 109.47180 * 59.99624 * 19 18 8 41 41 H 1.09005 * 109.46524 * 305.00134 * 20 19 18 42 42 H 1.08994 * 109.46901 * 180.02562 * 21 20 19 43 43 H 1.09000 * 109.46997 * 300.00992 * 21 20 19 44 44 H 1.09003 * 109.46795 * 60.00238 * 21 20 19 45 45 H 1.09003 * 109.47512 * 59.99516 * 22 20 19 46 46 H 1.09002 * 109.47688 * 179.97438 * 22 20 19 47 47 H 1.09003 * 109.46792 * 299.99958 * 22 20 19 48 48 H 1.08008 * 119.99983 * 179.97438 * 23 6 5 49 49 H 1.08007 * 119.99843 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 7 4.9256 5.4480 0.0001 9 6 5.4522 4.8912 1.2534 10 6 5.1785 3.4100 1.2990 11 1 4.6652 2.9301 0.4788 12 6 5.5835 2.6673 2.3878 13 7 6.2089 3.2515 3.3863 14 14 5.2437 0.8314 2.4447 15 1 6.3819 0.0982 1.8347 16 1 5.0780 0.4022 3.8566 17 1 4.0009 0.5343 1.6879 18 6 5.4521 6.7987 -0.2381 19 6 6.9611 6.7228 -0.4791 20 6 7.5095 8.1294 -0.7265 21 6 7.3437 8.9716 0.5401 22 6 8.9930 8.0419 -1.0902 23 6 2.7240 3.3755 1.1972 24 6 2.2628 2.0724 1.1971 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.0927 1.5598 -2.1325 31 1 2.9047 3.8844 -2.1324 32 1 3.0933 5.9619 -0.8899 33 1 3.0934 5.9618 0.8901 34 1 6.5272 5.0639 1.3043 35 1 4.9657 5.3767 2.0993 36 1 6.4935 2.7291 4.1525 37 1 4.9656 7.2291 -1.1134 38 1 5.2542 7.4244 0.6322 39 1 7.4475 6.2923 0.3962 40 1 7.1590 6.0969 -1.3493 41 1 6.9613 8.5941 -1.5460 42 1 7.7340 9.9738 0.3637 43 1 6.2868 9.0339 0.7992 44 1 7.8919 8.5069 1.3597 45 1 9.1111 7.4420 -1.9925 46 1 9.3836 9.0440 -1.2669 47 1 9.5411 7.5772 -0.2706 48 1 2.9041 3.8846 2.1326 49 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610391954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:23 Heat of formation + Delta-G solvation = -4.775530 kcal Electronic energy + Delta-G solvation = -23990.565916 eV Core-core repulsion = 20916.180540 eV Total energy + Delta-G solvation = -3074.385376 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.63138 -38.79894 -36.85556 -34.78853 -34.59520 -31.61105 -31.33508 -29.85465 -28.73019 -28.00446 -26.01434 -24.69618 -23.54981 -23.33717 -21.88005 -21.01340 -20.67638 -18.57268 -17.05662 -16.82356 -16.37580 -16.17884 -16.09448 -15.85544 -15.33599 -14.77291 -14.59443 -14.47716 -14.28713 -14.18942 -14.04805 -13.82801 -13.61463 -13.49112 -13.09338 -13.02188 -12.78462 -12.65940 -12.50524 -12.42624 -12.32633 -12.04515 -11.90682 -11.69106 -11.55223 -11.50350 -11.40346 -11.31168 -11.16070 -11.09498 -10.52995 -9.37115 -8.99781 -8.89201 -8.13441 -6.06713 0.72992 0.87688 1.37983 1.42903 1.56124 2.45523 3.00429 3.26459 3.54335 3.96366 4.03083 4.05847 4.10130 4.15495 4.26791 4.34464 4.39778 4.40587 4.58832 4.60770 4.67571 4.71003 4.73777 4.79148 4.82281 4.87017 4.93073 4.97673 5.00077 5.04322 5.11296 5.14409 5.20373 5.21109 5.26969 5.34155 5.35426 5.38670 5.48941 5.49489 5.51491 5.58387 5.78336 5.84149 5.99693 6.07515 6.18690 6.40819 6.45811 6.71591 6.99524 7.50734 8.97091 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.004969 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.466091 B = 5633.557767 C = 6694.185095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 C -0.088 4.088 4 C -0.145 4.145 5 C -0.106 4.106 6 C -0.084 4.084 7 C 0.107 3.893 8 N -0.539 5.539 9 C 0.206 3.794 10 C -0.480 4.480 11 H 0.086 0.914 12 C 0.008 3.992 13 N -0.938 5.938 14 Si 0.917 3.083 15 H -0.293 1.293 16 H -0.297 1.297 17 H -0.216 1.216 18 C 0.057 3.943 19 C -0.103 4.103 20 C -0.089 4.089 21 C -0.147 4.147 22 C -0.143 4.143 23 C -0.038 4.038 24 C -0.152 4.152 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.092 0.908 33 H 0.016 0.984 34 H 0.007 0.993 35 H -0.046 1.046 36 H 0.256 0.744 37 H 0.086 0.914 38 H 0.018 0.982 39 H 0.033 0.967 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.049 0.951 44 H 0.036 0.964 45 H 0.057 0.943 46 H 0.070 0.930 47 H 0.040 0.960 48 H 0.085 0.915 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.515 3.461 -10.311 12.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.122 4.122 3 C -0.088 4.088 4 C -0.163 4.163 5 C -0.124 4.124 6 C -0.084 4.084 7 C -0.020 4.020 8 N -0.263 5.263 9 C 0.080 3.920 10 C -0.517 4.517 11 H 0.104 0.896 12 C -0.189 4.189 13 N -0.580 5.580 14 Si 0.743 3.257 15 H -0.220 1.220 16 H -0.224 1.224 17 H -0.138 1.138 18 C -0.070 4.070 19 C -0.141 4.141 20 C -0.108 4.108 21 C -0.204 4.204 22 C -0.201 4.201 23 C -0.057 4.057 24 C -0.170 4.170 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.111 0.889 33 H 0.034 0.966 34 H 0.025 0.975 35 H -0.028 1.028 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.036 0.964 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.060 0.940 48 H 0.103 0.897 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.295 3.142 -10.536 12.669 hybrid contribution 0.357 -0.413 1.885 1.963 sum -5.938 2.728 -8.651 10.842 Atomic orbital electron populations 1.21678 0.93464 1.02266 1.01968 1.20563 0.97193 0.91904 1.02514 1.19946 0.99360 0.96629 0.92912 1.20987 1.02830 0.95015 0.97512 1.20966 0.99296 0.95080 0.97078 1.19519 0.99113 0.96563 0.93249 1.20886 0.87868 0.93277 0.99955 1.62162 1.06491 1.20909 1.36715 1.19467 0.93736 0.94595 0.84198 1.21862 1.33525 0.93125 1.03223 0.89610 1.25597 0.95641 1.01871 0.95755 1.70102 1.41683 1.37237 1.08947 0.86202 0.80746 0.81694 0.77055 1.21968 1.22379 1.13848 1.22174 0.96021 0.89066 0.99758 1.21573 0.94578 0.97187 1.00781 1.21071 0.97000 0.94313 0.98399 1.21877 1.01338 1.00009 0.97174 1.21805 0.95011 1.02203 1.01041 1.20582 0.93195 0.94899 0.97039 1.20738 1.03876 0.94897 0.97500 0.92105 0.93446 0.91009 0.92384 0.90213 0.84672 0.85256 0.88929 0.96585 0.97489 1.02822 0.93534 0.89537 0.96419 0.94812 0.92083 0.89720 0.91017 0.93155 0.94460 0.92408 0.91098 0.94047 0.89688 0.88074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.89 71.98 0.71 -2.28 16 2 C -0.08 -2.29 6.06 29.85 0.18 -2.11 16 3 C -0.09 -2.99 4.94 -19.87 -0.10 -3.09 16 4 C -0.15 -4.65 9.70 22.27 0.22 -4.44 16 5 C -0.11 -3.62 9.50 22.27 0.21 -3.41 16 6 C -0.08 -3.29 3.46 -19.86 -0.07 -3.35 16 7 C 0.11 4.05 5.11 85.56 0.44 4.49 16 8 N -0.54 -22.63 4.56 -905.36 -4.13 -26.76 16 9 C 0.21 10.77 4.53 85.56 0.39 11.16 16 10 C -0.48 -26.03 5.37 25.60 0.14 -25.89 16 11 H 0.09 4.59 4.72 -2.91 -0.01 4.58 16 12 C 0.01 0.48 5.44 84.66 0.46 0.94 16 13 N -0.94 -57.04 13.29 21.45 0.28 -56.76 16 14 Si 0.92 44.04 28.39 68.60 1.95 45.99 16 15 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 16 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 17 H -0.22 -9.39 4.93 99.48 0.49 -8.90 16 18 C 0.06 1.99 4.71 86.30 0.41 2.39 16 19 C -0.10 -3.45 4.64 30.59 0.14 -3.31 16 20 C -0.09 -2.25 2.92 -10.80 -0.03 -2.29 16 21 C -0.15 -3.71 8.95 71.98 0.64 -3.06 16 22 C -0.14 -3.28 9.19 71.98 0.66 -2.61 16 23 C -0.04 -1.63 5.88 22.27 0.13 -1.50 16 24 C -0.15 -5.92 6.68 22.27 0.15 -5.77 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.06 1.65 8.09 -2.39 -0.02 1.63 16 29 H 0.08 1.91 8.08 -2.39 -0.02 1.90 16 30 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 31 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 32 H 0.09 2.86 7.88 -2.39 -0.02 2.84 16 33 H 0.02 0.63 7.96 -2.39 -0.02 0.62 16 34 H 0.01 0.41 5.98 -2.39 -0.01 0.39 16 35 H -0.05 -2.66 7.99 -2.39 -0.02 -2.68 16 36 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 37 H 0.09 2.49 7.93 -2.39 -0.02 2.47 16 38 H 0.02 0.64 6.54 -2.38 -0.02 0.62 16 39 H 0.03 1.36 6.31 -2.39 -0.02 1.35 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.05 1.31 6.56 -2.39 -0.02 1.30 16 44 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.08 4.07 7.68 -2.91 -0.02 4.05 16 49 H 0.10 3.89 7.90 -2.91 -0.02 3.87 16 Total: -1.00 -63.45 371.83 3.44 -60.01 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.66 Total: 21.64 kcal Atomic # 6 Polarization: -48.80 SS G_CDS: 4.68 Total: -44.12 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -3.84 Total: -83.52 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.95 Total: 45.99 kcal Total: -63.45 3.44 -60.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610391954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.230 kcal (2) G-P(sol) polarization free energy of solvation -63.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds