Wall clock time and date at job start Tue Mar 31 2020 06:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 N 1.46905 * 109.46980 * 65.00539 * 4 2 1 6 6 C 1.46899 * 110.99760 * 180.02562 * 5 4 2 7 7 H 1.09001 * 109.46922 * 324.99084 * 6 5 4 8 8 C 1.53004 * 109.46788 * 204.99790 * 6 5 4 9 9 C 1.50705 * 109.47207 * 64.99652 * 8 6 5 10 10 H 1.08000 * 119.99618 * 359.97438 * 9 8 6 11 11 C 1.37876 * 120.00028 * 180.02562 * 9 8 6 12 12 N 1.31513 * 120.00097 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 119.99926 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47578 * 89.99932 * 13 11 9 15 15 H 1.48499 * 109.47125 * 210.00241 * 13 11 9 16 16 H 1.48506 * 109.47170 * 329.99895 * 13 11 9 17 17 C 1.50695 * 109.47880 * 84.99642 * 6 5 4 18 18 C 1.38237 * 119.99501 * 39.72267 * 17 6 5 19 19 C 1.38236 * 119.99823 * 179.78995 * 18 17 6 20 20 C 1.38239 * 120.00081 * 0.44540 * 19 18 17 21 21 C 1.38238 * 119.99556 * 359.80716 * 20 19 18 22 22 C 1.38230 * 120.00295 * 359.97438 * 21 20 19 23 23 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 24 24 C 1.52997 * 109.47269 * 60.00164 * 23 2 1 25 25 C 1.53006 * 109.46997 * 179.97438 * 23 2 1 26 26 C 1.52997 * 109.47317 * 299.99820 * 23 2 1 27 27 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 30 30 H 1.09000 * 109.46875 * 184.99989 * 4 2 1 31 31 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 32 32 H 1.00899 * 111.00107 * 56.04359 * 5 4 2 33 33 H 1.08998 * 109.47405 * 184.99387 * 8 6 5 34 34 H 1.09001 * 109.47213 * 304.99954 * 8 6 5 35 35 H 0.97001 * 120.00223 * 179.97438 * 12 11 9 36 36 H 1.08002 * 120.00652 * 0.02562 * 18 17 6 37 37 H 1.07997 * 120.00183 * 180.27069 * 19 18 17 38 38 H 1.07993 * 120.00327 * 179.83436 * 20 19 18 39 39 H 1.07997 * 120.00013 * 180.02562 * 21 20 19 40 40 H 1.07997 * 120.00380 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.47140 * 59.99453 * 24 23 2 42 42 H 1.09001 * 109.47375 * 179.97438 * 24 23 2 43 43 H 1.09002 * 109.47497 * 299.99829 * 24 23 2 44 44 H 1.08996 * 109.47261 * 59.99820 * 25 23 2 45 45 H 1.09001 * 109.47377 * 180.02562 * 25 23 2 46 46 H 1.09000 * 109.46866 * 300.00212 * 25 23 2 47 47 H 1.09002 * 109.47153 * 60.00359 * 26 23 2 48 48 H 1.09001 * 109.46832 * 180.02562 * 26 23 2 49 49 H 1.08992 * 109.47303 * 299.99871 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6515 0.0374 -2.4456 6 6 2.1249 -0.6272 -3.6672 7 1 3.0884 -1.0988 -3.4741 8 6 2.2781 0.4074 -4.7839 9 6 3.3634 1.3863 -4.4164 10 1 3.8908 1.2812 -3.4797 11 6 3.6824 2.4165 -5.2754 12 7 4.6291 3.2711 -4.9544 13 14 2.7688 2.5994 -6.8944 14 1 1.5782 3.4646 -6.6960 15 1 3.6671 3.2171 -7.9026 16 1 2.3346 1.2618 -7.3716 17 6 1.1276 -1.6759 -4.0873 18 6 -0.2273 -1.4220 -3.9837 19 6 -1.1422 -2.3823 -4.3732 20 6 -0.7023 -3.5999 -4.8577 21 6 0.6526 -3.8557 -4.9565 22 6 1.5675 -2.8937 -4.5712 23 6 2.0399 -0.7212 1.2493 24 6 1.5299 -2.1637 1.2493 25 6 3.5700 -0.7218 1.2491 26 6 1.5299 0.0001 2.4985 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.1264 -0.7995 -1.2055 31 1 1.6054 -1.7198 -1.2951 32 1 1.9883 0.9873 -2.3966 33 1 2.5435 -0.0973 -5.7129 34 1 1.3371 0.9412 -4.9164 35 1 4.8538 3.9957 -5.5589 36 1 -0.5712 -0.4720 -3.6019 37 1 -2.2008 -2.1823 -4.2963 38 1 -1.4170 -4.3511 -5.1595 39 1 0.9964 -4.8067 -5.3354 40 1 2.6260 -3.0934 -4.6488 41 1 1.8933 -2.6775 0.3593 42 1 1.8935 -2.6777 2.1391 43 1 0.4399 -2.1637 1.2493 44 1 3.9338 0.3056 1.2488 45 1 3.9333 -1.2360 2.1388 46 1 3.9329 -1.2359 0.3591 47 1 0.4399 0.0001 2.4985 48 1 1.8936 -0.5135 3.3885 49 1 1.8933 1.0276 2.4985 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619845028.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:21 Heat of formation + Delta-G solvation = -5.479899 kcal Electronic energy + Delta-G solvation = -23990.527377 eV Core-core repulsion = 20916.111457 eV Total energy + Delta-G solvation = -3074.415919 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.22437 -38.52417 -35.80004 -32.80974 -31.76443 -30.47510 -29.83963 -29.07041 -27.48509 -27.23669 -25.11073 -23.91607 -22.17574 -21.76147 -21.36326 -19.57041 -17.93890 -17.02628 -16.22096 -15.47372 -15.05514 -14.80746 -14.54563 -14.45117 -14.16336 -13.95258 -13.62424 -13.20409 -12.94534 -12.83275 -12.71033 -12.35001 -12.22398 -11.99430 -11.86564 -11.77082 -11.64752 -11.42884 -11.32314 -11.06386 -10.98916 -10.84647 -10.64331 -10.42392 -10.15004 -10.12198 -10.06151 -9.84072 -9.75616 -9.23768 -8.59493 -8.50354 -8.16557 -7.70282 -6.10299 -4.09313 1.78731 1.84057 3.29566 3.37220 3.42324 4.22595 4.41740 4.66561 4.88978 4.92169 5.07515 5.26686 5.27077 5.33905 5.35544 5.40446 5.53721 5.57693 5.67467 5.70187 5.74300 5.79892 5.85079 5.96077 5.97494 6.00496 6.03052 6.08580 6.11383 6.17928 6.21762 6.26328 6.30599 6.33776 6.37808 6.46570 6.53597 6.57243 6.66699 6.76331 6.84224 6.89945 7.13356 7.16443 7.23954 7.44020 7.70993 7.88663 8.22452 8.43290 8.90945 9.52211 11.02364 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.010295 B = 0.006044 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.031308 B = 4631.382877 C = 6589.986936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.077 4.077 3 H 0.068 0.932 4 C 0.063 3.937 5 N -0.679 5.679 6 C 0.137 3.863 7 H 0.044 0.956 8 C -0.009 4.009 9 C -0.523 4.523 10 H 0.071 0.929 11 C 0.072 3.928 12 N -0.900 5.900 13 Si 0.878 3.122 14 H -0.276 1.276 15 H -0.289 1.289 16 H -0.265 1.265 17 C -0.056 4.056 18 C -0.088 4.088 19 C -0.131 4.131 20 C -0.137 4.137 21 C -0.128 4.128 22 C -0.124 4.124 23 C -0.063 4.063 24 C -0.143 4.143 25 C -0.145 4.145 26 C -0.141 4.141 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.028 0.972 31 H 0.063 0.937 32 H 0.359 0.641 33 H 0.021 0.979 34 H 0.023 0.977 35 H 0.263 0.737 36 H 0.129 0.871 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.049 0.951 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.049 0.951 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.617 -11.221 9.386 16.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.096 4.096 3 H 0.087 0.913 4 C -0.066 4.066 5 N -0.313 5.313 6 C 0.027 3.973 7 H 0.062 0.938 8 C -0.046 4.046 9 C -0.561 4.561 10 H 0.089 0.911 11 C -0.130 4.130 12 N -0.538 5.538 13 Si 0.706 3.294 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.190 1.190 17 C -0.057 4.057 18 C -0.106 4.106 19 C -0.149 4.149 20 C -0.155 4.155 21 C -0.146 4.146 22 C -0.142 4.142 23 C -0.064 4.064 24 C -0.200 4.200 25 C -0.202 4.202 26 C -0.198 4.198 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.181 0.819 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.073 0.927 36 H 0.147 0.853 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.132 -11.314 9.291 17.254 hybrid contribution 0.649 0.350 -0.906 1.168 sum -8.483 -10.963 8.385 16.200 Atomic orbital electron populations 1.21804 0.94981 1.01365 1.01405 1.21117 0.96291 0.99215 0.92972 0.91328 1.22086 0.97239 0.97498 0.89779 1.60439 1.63743 1.06890 1.00225 1.20365 0.92404 0.93109 0.91412 0.93791 1.19732 0.97538 0.93829 0.93514 1.21022 1.18401 1.10298 1.06412 0.91117 1.24964 0.94675 0.95344 0.98019 1.69908 1.30629 1.16005 1.37271 0.86798 0.79874 0.78838 0.83936 1.20175 1.21483 1.18980 1.20241 0.95049 0.94116 0.96251 1.21060 0.92474 0.99305 0.97808 1.21132 0.99195 0.94234 1.00319 1.20982 0.95515 0.97300 1.01727 1.20981 0.93373 0.98991 1.01220 1.21064 0.99398 0.93613 1.00174 1.20517 0.95301 0.95445 0.95103 1.21953 1.01110 0.95613 1.01300 1.21954 0.94890 1.01910 1.01486 1.21907 1.01087 1.00116 0.96706 0.91483 0.93151 0.93714 0.95429 0.91834 0.81891 0.96038 0.95900 0.92683 0.85332 0.86898 0.87101 0.86928 0.86649 0.92467 0.93398 0.92437 0.92630 0.93238 0.92215 0.92425 0.93226 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.38 37.16 0.31 -1.44 16 2 C -0.08 -1.03 1.89 -90.62 -0.17 -1.20 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.06 0.98 4.15 -3.82 -0.02 0.96 16 5 N -0.68 -12.09 4.99 -107.95 -0.54 -12.63 16 6 C 0.14 2.67 2.19 -68.87 -0.15 2.52 16 7 H 0.04 0.90 7.66 -51.93 -0.40 0.50 16 8 C -0.01 -0.20 3.62 -27.88 -0.10 -0.30 16 9 C -0.52 -14.11 8.67 -34.44 -0.30 -14.41 16 10 H 0.07 2.04 7.73 -52.49 -0.41 1.63 16 11 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 12 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16 13 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 16 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 17 C -0.06 -0.98 4.71 -104.63 -0.49 -1.48 16 18 C -0.09 -1.46 9.33 -39.58 -0.37 -1.83 16 19 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 20 C -0.14 -1.87 10.05 -39.58 -0.40 -2.27 16 21 C -0.13 -1.82 10.05 -39.58 -0.40 -2.21 16 22 C -0.12 -2.01 9.67 -39.59 -0.38 -2.39 16 23 C -0.06 -0.73 0.57 -154.51 -0.09 -0.82 16 24 C -0.14 -1.56 7.77 37.16 0.29 -1.28 16 25 C -0.15 -1.73 8.13 37.16 0.30 -1.43 16 26 C -0.14 -1.47 8.12 37.16 0.30 -1.17 16 27 H 0.07 0.94 7.75 -51.93 -0.40 0.54 16 28 H 0.05 0.62 6.43 -51.93 -0.33 0.29 16 29 H 0.04 0.51 6.43 -51.93 -0.33 0.18 16 30 H 0.03 0.46 6.09 -51.93 -0.32 0.14 16 31 H 0.06 0.99 6.56 -51.93 -0.34 0.64 16 32 H 0.36 7.17 7.21 -39.29 -0.28 6.89 16 33 H 0.02 0.52 7.20 -51.93 -0.37 0.14 16 34 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.13 2.15 7.71 -52.49 -0.40 1.75 16 37 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 38 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.12 1.77 8.04 -52.49 -0.42 1.35 16 41 H 0.06 0.67 6.54 -51.93 -0.34 0.33 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.76 6.32 -51.93 -0.33 0.43 16 47 H 0.06 0.58 6.43 -51.93 -0.33 0.24 16 48 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -28.23 373.42 -9.68 -37.91 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -8.72 Total: 7.51 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: -2.16 Total: -29.10 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.23 Total: -38.82 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.23 -9.68 -37.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619845028.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.433 kcal (2) G-P(sol) polarization free energy of solvation -28.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds